Gcaud2743.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2743.t1
Unique NameGcaud2743.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length162
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1014_length_15058_cov_4.199439contigNODE_1014_length_15058_cov_4.199439:10555..11226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705095.1
PFAMsYGGT
Max annot lvl2759|Eukaryota
KEGG koko:K02221
Evalue1.08e-37
EggNOG OGsCOG0762@1|root,2S4TK@2759|Eukaryota
DescriptionYGGT family
COG categoryS
BRITEko00000,ko02044
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2743Gcaud2743Gracilaria caudata M_176_S67 malegeneNODE_1014_length_15058_cov_4.199439 10555..11226 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2743.t1Gcaud2743.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1014_length_15058_cov_4.199439 10555..11226 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2743.t1.start1Gcaud2743.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1014_length_15058_cov_4.199439 10555..10557 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2743.t1.CDS1Gcaud2743.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1014_length_15058_cov_4.199439 10555..10759 +
Gcaud2743.t1.CDS2Gcaud2743.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1014_length_15058_cov_4.199439 10853..11025 +
Gcaud2743.t1.CDS3Gcaud2743.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_1014_length_15058_cov_4.199439 11119..11226 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2743.t1.exon1Gcaud2743.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1014_length_15058_cov_4.199439 10555..10759 +
Gcaud2743.t1.exon2Gcaud2743.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1014_length_15058_cov_4.199439 10853..11025 +
Gcaud2743.t1.exon3Gcaud2743.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_1014_length_15058_cov_4.199439 11119..11226 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2743.t1.intron1Gcaud2743.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1014_length_15058_cov_4.199439 10760..10852 +
Gcaud2743.t1.intron2Gcaud2743.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_1014_length_15058_cov_4.199439 11026..11118 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2743.t1.stop1Gcaud2743.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1014_length_15058_cov_4.199439 11224..11226 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2743.t1 ID=Gcaud2743.t1|Name=Gcaud2743.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=162bp
MSAVFTLRRKRLVLSNSVAAVPIAMLAPKHTRIHRRDVPAMLLPGDSVLE
STTIGGTVTFFSIYQNVIVARILLSWFPGIQNNRLVRPLFTVCDPYLNLF
RSVVPPVFGLDLSPVLALFVLQAFGSATAALGAEMNEKRAVSRTRGILSQ
LRMKLRPQAQH*
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spliced messenger RNA

>Gcaud2743.t1 ID=Gcaud2743.t1|Name=Gcaud2743.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=486bp|location=Sequence derived from alignment at NODE_1014_length_15058_cov_4.199439:10555..11226+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGCCGTGTTCACTTTGCGTCGCAAACGACTCGTGCTGAGCAATTC
AGTGGCCGCCGTTCCCATCGCAATGCTCGCGCCCAAACACACGCGCATCC
ATCGTCGAGACGTACCGGCAATGCTACTTCCCGGCGACAGCGTTTTGGAA
AGCACCACCATCGGAGGAACCGTAACCTTTTTCAGCATCTATCAGAATGT
TATTGTGGCGCGTATTCTTCTTTCGTGGTTCCCCGGAATCCAGAACAACC
GTCTGGTGAGACCGCTTTTCACGGTTTGTGATCCGTATCTGAACCTGTTT
CGAAGCGTGGTGCCGCCCGTTTTTGGACTTGATCTGTCTCCTGTACTCGC
TCTGTTTGTGCTGCAAGCGTTCGGATCCGCTACTGCTGCATTGGGAGCCG
AAATGAACGAGAAGCGAGCTGTGAGCAGAACACGAGGCATTCTGAGTCAA
CTGCGCATGAAACTGCGCCCGCAAGCACAACACTAG
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protein sequence of Gcaud2743.t1

>Gcaud2743.t1 ID=Gcaud2743.t1|Name=Gcaud2743.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=162bp
MSAVFTLRRKRLVLSNSVAAVPIAMLAPKHTRIHRRDVPAMLLPGDSVLE
STTIGGTVTFFSIYQNVIVARILLSWFPGIQNNRLVRPLFTVCDPYLNLF
RSVVPPVFGLDLSPVLALFVLQAFGSATAALGAEMNEKRAVSRTRGILSQ
LRMKLRPQAQH*
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mRNA from alignment at NODE_1014_length_15058_cov_4.199439:10555..11226+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2743.t1 ID=Gcaud2743.t1|Name=Gcaud2743.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=672bp|location=Sequence derived from alignment at NODE_1014_length_15058_cov_4.199439:10555..11226+ (Gracilaria caudata M_176_S67 male)
ATGAGTGCCGTGTTCACTTTGCGTCGCAAACGACTCGTGCTGAGCAATTC
AGTGGCCGCCGTTCCCATCGCAATGCTCGCGCCCAAACACACGCGCATCC
ATCGTCGAGACGTACCGGCAATGCTACTTCCCGGCGACAGCGTTTTGGAA
AGCACCACCATCGGAGGAACCGTAACCTTTTTCAGCATCTATCAGAATGT
TATTGGTACGTATTCTCTCGCAGCTGTCAAAGCGTCATGAGTGGTGCGCA
GTTTTTGTTAACGATAGCGTTGCTACTTGTACTTTTTTGCTCGAACAGTG
GCGCGTATTCTTCTTTCGTGGTTCCCCGGAATCCAGAACAACCGTCTGGT
GAGACCGCTTTTCACGGTTTGTGATCCGTATCTGAACCTGTTTCGAAGCG
TGGTGCCGCCCGTTTTTGGACTTGATCTGTCTCCTGTACTCGCTCTGTTT
GTGCTGCAAGCGTTCGGATCCGTACGTTATTGGTTACTGAATTTGCTTTT
TTAACAAGATGAACACGGCTTCTCTTTTTACTGACTTTTTGTACATGTGC
TCTCGAAAACACAGGCTACTGCTGCATTGGGAGCCGAAATGAACGAGAAG
CGAGCTGTGAGCAGAACACGAGGCATTCTGAGTCAACTGCGCATGAAACT
GCGCCCGCAAGCACAACACTAG
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Coding sequence (CDS) from alignment at NODE_1014_length_15058_cov_4.199439:10555..11226+

>Gcaud2743.t1 ID=Gcaud2743.t1|Name=Gcaud2743.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=486bp|location=Sequence derived from alignment at NODE_1014_length_15058_cov_4.199439:10555..11226+ (Gracilaria caudata M_176_S67 male)
ATGAGTGCCGTGTTCACTTTGCGTCGCAAACGACTCGTGCTGAGCAATTC
AGTGGCCGCCGTTCCCATCGCAATGCTCGCGCCCAAACACACGCGCATCC
ATCGTCGAGACGTACCGGCAATGCTACTTCCCGGCGACAGCGTTTTGGAA
AGCACCACCATCGGAGGAACCGTAACCTTTTTCAGCATCTATCAGAATGT
TATTGTGGCGCGTATTCTTCTTTCGTGGTTCCCCGGAATCCAGAACAACC
GTCTGGTGAGACCGCTTTTCACGGTTTGTGATCCGTATCTGAACCTGTTT
CGAAGCGTGGTGCCGCCCGTTTTTGGACTTGATCTGTCTCCTGTACTCGC
TCTGTTTGTGCTGCAAGCGTTCGGATCCGCTACTGCTGCATTGGGAGCCG
AAATGAACGAGAAGCGAGCTGTGAGCAGAACACGAGGCATTCTGAGTCAA
CTGCGCATGAAACTGCGCCCGCAAGCACAACACTAG
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