Gcaud2742.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2742.t1
Unique NameGcaud2742.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length204
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1014_length_15058_cov_4.199439contigNODE_1014_length_15058_cov_4.199439:9334..10009 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2742Gcaud2742Gracilaria caudata M_176_S67 malegeneNODE_1014_length_15058_cov_4.199439 9334..10009 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2742.t1Gcaud2742.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1014_length_15058_cov_4.199439 9334..10009 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2742.t1.start1Gcaud2742.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1014_length_15058_cov_4.199439 9334..9336 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2742.t1.CDS1Gcaud2742.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1014_length_15058_cov_4.199439 9334..9410 +
Gcaud2742.t1.CDS2Gcaud2742.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1014_length_15058_cov_4.199439 9475..10009 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2742.t1.exon1Gcaud2742.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1014_length_15058_cov_4.199439 9334..9410 +
Gcaud2742.t1.exon2Gcaud2742.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1014_length_15058_cov_4.199439 9475..10009 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2742.t1.intron1Gcaud2742.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1014_length_15058_cov_4.199439 9411..9474 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2742.t1.stop1Gcaud2742.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1014_length_15058_cov_4.199439 10007..10009 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2742.t1 ID=Gcaud2742.t1|Name=Gcaud2742.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=204bp
MSPTKRKLRTERNQSRKRLKRTDSSSPTEFTASRSKAGPSTLTRLSEKDG
HLPRMGPICSSLAETTIVTLSRIALRLDENSFVLHTHPERVNASNALTLS
VFANVLTLSDDIVCQIGATYPRVNEALVLAFEAVKRAFDVSHRLMSTSLR
RRDEQPVRCNLNSRDTERDRKKRSRDALEFAARSTATRGVIYDRDGGFEK
HSF*
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spliced messenger RNA

>Gcaud2742.t1 ID=Gcaud2742.t1|Name=Gcaud2742.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=612bp|location=Sequence derived from alignment at NODE_1014_length_15058_cov_4.199439:9334..10009+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCTACCAAGCGCAAACTAAGAACCGAACGAAATCAGTCGCGGAA
GCGACTCAAACGAACTGATTCCTCATCTCCAACCGAATTCACAGCTTCGA
GAAGCAAAGCAGGCCCGTCAACGCTCACCAGGCTCAGCGAGAAGGATGGC
CACCTTCCGCGTATGGGTCCAATATGTTCCTCACTAGCCGAAACAACCAT
TGTCACTCTTTCACGCATCGCGCTTCGTCTGGACGAGAACTCGTTCGTTC
TGCACACGCACCCGGAACGCGTGAACGCCTCAAATGCGTTGACCTTGAGC
GTGTTTGCTAATGTATTGACACTTTCTGACGACATTGTGTGCCAAATAGG
AGCCACATATCCCCGCGTGAACGAGGCGCTGGTTTTGGCGTTTGAGGCTG
TAAAACGAGCTTTTGACGTGAGCCATAGGTTGATGAGCACCTCTTTGAGG
CGGAGAGATGAGCAGCCTGTTCGGTGTAATCTGAACTCGCGAGATACTGA
GCGAGACAGGAAGAAGCGGAGCAGAGATGCTTTGGAGTTTGCGGCACGTT
CTACGGCCACGCGTGGTGTGATTTATGATCGTGATGGGGGCTTTGAAAAG
CACTCTTTCTGA
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protein sequence of Gcaud2742.t1

>Gcaud2742.t1 ID=Gcaud2742.t1|Name=Gcaud2742.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=204bp
MSPTKRKLRTERNQSRKRLKRTDSSSPTEFTASRSKAGPSTLTRLSEKDG
HLPRMGPICSSLAETTIVTLSRIALRLDENSFVLHTHPERVNASNALTLS
VFANVLTLSDDIVCQIGATYPRVNEALVLAFEAVKRAFDVSHRLMSTSLR
RRDEQPVRCNLNSRDTERDRKKRSRDALEFAARSTATRGVIYDRDGGFEK
HSF*
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mRNA from alignment at NODE_1014_length_15058_cov_4.199439:9334..10009+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2742.t1 ID=Gcaud2742.t1|Name=Gcaud2742.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=676bp|location=Sequence derived from alignment at NODE_1014_length_15058_cov_4.199439:9334..10009+ (Gracilaria caudata M_176_S67 male)
ATGTCGCCTACCAAGCGCAAACTAAGAACCGAACGAAATCAGTCGCGGAA
GCGACTCAAACGAACTGATTCCTCATCGTGAGTACCAAAAATCTTCATAA
GCGCCATTCGAACTAATGTACACTGACCACGTCCCTCGCAGTCCAACCGA
ATTCACAGCTTCGAGAAGCAAAGCAGGCCCGTCAACGCTCACCAGGCTCA
GCGAGAAGGATGGCCACCTTCCGCGTATGGGTCCAATATGTTCCTCACTA
GCCGAAACAACCATTGTCACTCTTTCACGCATCGCGCTTCGTCTGGACGA
GAACTCGTTCGTTCTGCACACGCACCCGGAACGCGTGAACGCCTCAAATG
CGTTGACCTTGAGCGTGTTTGCTAATGTATTGACACTTTCTGACGACATT
GTGTGCCAAATAGGAGCCACATATCCCCGCGTGAACGAGGCGCTGGTTTT
GGCGTTTGAGGCTGTAAAACGAGCTTTTGACGTGAGCCATAGGTTGATGA
GCACCTCTTTGAGGCGGAGAGATGAGCAGCCTGTTCGGTGTAATCTGAAC
TCGCGAGATACTGAGCGAGACAGGAAGAAGCGGAGCAGAGATGCTTTGGA
GTTTGCGGCACGTTCTACGGCCACGCGTGGTGTGATTTATGATCGTGATG
GGGGCTTTGAAAAGCACTCTTTCTGA
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Coding sequence (CDS) from alignment at NODE_1014_length_15058_cov_4.199439:9334..10009+

>Gcaud2742.t1 ID=Gcaud2742.t1|Name=Gcaud2742.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=612bp|location=Sequence derived from alignment at NODE_1014_length_15058_cov_4.199439:9334..10009+ (Gracilaria caudata M_176_S67 male)
ATGTCGCCTACCAAGCGCAAACTAAGAACCGAACGAAATCAGTCGCGGAA
GCGACTCAAACGAACTGATTCCTCATCTCCAACCGAATTCACAGCTTCGA
GAAGCAAAGCAGGCCCGTCAACGCTCACCAGGCTCAGCGAGAAGGATGGC
CACCTTCCGCGTATGGGTCCAATATGTTCCTCACTAGCCGAAACAACCAT
TGTCACTCTTTCACGCATCGCGCTTCGTCTGGACGAGAACTCGTTCGTTC
TGCACACGCACCCGGAACGCGTGAACGCCTCAAATGCGTTGACCTTGAGC
GTGTTTGCTAATGTATTGACACTTTCTGACGACATTGTGTGCCAAATAGG
AGCCACATATCCCCGCGTGAACGAGGCGCTGGTTTTGGCGTTTGAGGCTG
TAAAACGAGCTTTTGACGTGAGCCATAGGTTGATGAGCACCTCTTTGAGG
CGGAGAGATGAGCAGCCTGTTCGGTGTAATCTGAACTCGCGAGATACTGA
GCGAGACAGGAAGAAGCGGAGCAGAGATGCTTTGGAGTTTGCGGCACGTT
CTACGGCCACGCGTGGTGTGATTTATGATCGTGATGGGGGCTTTGAAAAG
CACTCTTTCTGA
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