Gcaud2741.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2741.t1
Unique NameGcaud2741.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length203
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1014_length_15058_cov_4.199439contigNODE_1014_length_15058_cov_4.199439:5477..6155 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3067.XP_002953459.1
Max annot lvl33090|Viridiplantae
Evalue0.000157
EggNOG OGs2CQRH@1|root,2R5I5@2759|Eukaryota,381K8@33090|Viridiplantae
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2741Gcaud2741Gracilaria caudata M_176_S67 malegeneNODE_1014_length_15058_cov_4.199439 5477..6155 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2741.t1Gcaud2741.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1014_length_15058_cov_4.199439 5477..6155 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2741.t1.stop1Gcaud2741.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1014_length_15058_cov_4.199439 5477..5479 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2741.t1.CDS1Gcaud2741.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1014_length_15058_cov_4.199439 5477..5919 -
Gcaud2741.t1.CDS2Gcaud2741.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1014_length_15058_cov_4.199439 5990..6155 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2741.t1.exon1Gcaud2741.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1014_length_15058_cov_4.199439 5477..5919 -
Gcaud2741.t1.exon2Gcaud2741.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1014_length_15058_cov_4.199439 5990..6155 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2741.t1.intron1Gcaud2741.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1014_length_15058_cov_4.199439 5920..5989 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2741.t1.start1Gcaud2741.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1014_length_15058_cov_4.199439 6153..6155 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2741.t1 ID=Gcaud2741.t1|Name=Gcaud2741.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=203bp
MHIPEAVEDMDLYMSFESRFGKRSKMTQEIPSFAHAKRERVSDSIYVIRT
KFQIEAIRKKWDAVIVRNPGIGKSVFAQYYLARIFNEQIVWTPAGGRFWK
RFPEVVVRPNGAKFTELCFVPEHEFAFMKSDPKGLLDAFEPQRTLLLFGR
GEDICEPVLNSKIPTSVYVSPNTSRYKEFLKRGARKLYNPVWDLNEILSS
LR*
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spliced messenger RNA

>Gcaud2741.t1 ID=Gcaud2741.t1|Name=Gcaud2741.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=609bp|location=Sequence derived from alignment at NODE_1014_length_15058_cov_4.199439:5477..6155- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACATACCCGAGGCTGTGGAGGACATGGACTTGTATATGAGCTTTGA
AAGCCGTTTTGGCAAAAGATCCAAGATGACCCAAGAAATCCCGTCCTTCG
CGCATGCTAAGAGAGAACGGGTGTCGGACTCTATCTACGTCATACGTACT
AAGTTTCAGATTGAAGCTATTCGAAAGAAATGGGACGCCGTAATTGTTAG
GAACCCTGGTATCGGAAAGAGTGTGTTTGCACAGTACTATCTTGCTCGCA
TCTTCAACGAACAAATTGTATGGACCCCTGCTGGCGGACGTTTTTGGAAA
CGCTTCCCCGAAGTTGTGGTGCGTCCGAATGGTGCAAAGTTTACAGAGCT
GTGCTTTGTGCCAGAACACGAATTTGCGTTCATGAAAAGCGACCCTAAAG
GTTTACTTGACGCGTTTGAACCCCAACGCACGCTGCTTCTTTTCGGACGT
GGGGAGGATATCTGTGAGCCTGTGTTGAATTCTAAGATTCCAACATCGGT
GTATGTGTCCCCAAACACTTCAAGGTACAAGGAGTTCTTGAAGAGAGGAG
CTCGAAAGCTGTACAATCCGGTTTGGGATCTTAACGAAATACTTAGTTCG
CTGAGGTGA
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protein sequence of Gcaud2741.t1

>Gcaud2741.t1 ID=Gcaud2741.t1|Name=Gcaud2741.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=203bp
MHIPEAVEDMDLYMSFESRFGKRSKMTQEIPSFAHAKRERVSDSIYVIRT
KFQIEAIRKKWDAVIVRNPGIGKSVFAQYYLARIFNEQIVWTPAGGRFWK
RFPEVVVRPNGAKFTELCFVPEHEFAFMKSDPKGLLDAFEPQRTLLLFGR
GEDICEPVLNSKIPTSVYVSPNTSRYKEFLKRGARKLYNPVWDLNEILSS
LR*
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mRNA from alignment at NODE_1014_length_15058_cov_4.199439:5477..6155-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2741.t1 ID=Gcaud2741.t1|Name=Gcaud2741.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=679bp|location=Sequence derived from alignment at NODE_1014_length_15058_cov_4.199439:5477..6155- (Gracilaria caudata M_176_S67 male)
ATGCACATACCCGAGGCTGTGGAGGACATGGACTTGTATATGAGCTTTGA
AAGCCGTTTTGGCAAAAGATCCAAGATGACCCAAGAAATCCCGTCCTTCG
CGCATGCTAAGAGAGAACGGGTGTCGGACTCTATCTACGTCATACGTACT
AAGTTTCAGATTGAAGGTATTGGATGTAATCTGTGTCCACATCTACCTTT
TTGTGCGTCGACGAGACCATGATTCTCTTCTACGAGCTATTCGAAAGAAA
TGGGACGCCGTAATTGTTAGGAACCCTGGTATCGGAAAGAGTGTGTTTGC
ACAGTACTATCTTGCTCGCATCTTCAACGAACAAATTGTATGGACCCCTG
CTGGCGGACGTTTTTGGAAACGCTTCCCCGAAGTTGTGGTGCGTCCGAAT
GGTGCAAAGTTTACAGAGCTGTGCTTTGTGCCAGAACACGAATTTGCGTT
CATGAAAAGCGACCCTAAAGGTTTACTTGACGCGTTTGAACCCCAACGCA
CGCTGCTTCTTTTCGGACGTGGGGAGGATATCTGTGAGCCTGTGTTGAAT
TCTAAGATTCCAACATCGGTGTATGTGTCCCCAAACACTTCAAGGTACAA
GGAGTTCTTGAAGAGAGGAGCTCGAAAGCTGTACAATCCGGTTTGGGATC
TTAACGAAATACTTAGTTCGCTGAGGTGA
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Coding sequence (CDS) from alignment at NODE_1014_length_15058_cov_4.199439:5477..6155-

>Gcaud2741.t1 ID=Gcaud2741.t1|Name=Gcaud2741.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=609bp|location=Sequence derived from alignment at NODE_1014_length_15058_cov_4.199439:5477..6155- (Gracilaria caudata M_176_S67 male)
ATGCACATACCCGAGGCTGTGGAGGACATGGACTTGTATATGAGCTTTGA
AAGCCGTTTTGGCAAAAGATCCAAGATGACCCAAGAAATCCCGTCCTTCG
CGCATGCTAAGAGAGAACGGGTGTCGGACTCTATCTACGTCATACGTACT
AAGTTTCAGATTGAAGCTATTCGAAAGAAATGGGACGCCGTAATTGTTAG
GAACCCTGGTATCGGAAAGAGTGTGTTTGCACAGTACTATCTTGCTCGCA
TCTTCAACGAACAAATTGTATGGACCCCTGCTGGCGGACGTTTTTGGAAA
CGCTTCCCCGAAGTTGTGGTGCGTCCGAATGGTGCAAAGTTTACAGAGCT
GTGCTTTGTGCCAGAACACGAATTTGCGTTCATGAAAAGCGACCCTAAAG
GTTTACTTGACGCGTTTGAACCCCAACGCACGCTGCTTCTTTTCGGACGT
GGGGAGGATATCTGTGAGCCTGTGTTGAATTCTAAGATTCCAACATCGGT
GTATGTGTCCCCAAACACTTCAAGGTACAAGGAGTTCTTGAAGAGAGGAG
CTCGAAAGCTGTACAATCCGGTTTGGGATCTTAACGAAATACTTAGTTCG
CTGAGGTGA
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