Gcaud274.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud274.t1
Unique Name	Gcaud274.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	309

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_4738_length_2030_cov_6.212481	contig	NODE_4738_length_2030_cov_6.212481:792..1718 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2850.Phatr36103
PFAMs	TLD
Max annot lvl	2836\|Bacillariophyta
Evalue	1.52e-74
EggNOG OGs	2BGQI@1\|root,2QXE6@2759\|Eukaryota,2XEWK@2836\|Bacillariophyta
Description	TLD
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud274	Gcaud274	Gracilaria caudata M_176_S67 male	gene	NODE_4738_length_2030_cov_6.212481 792..1718 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud274.t1.start1	Gcaud274.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_4738_length_2030_cov_6.212481 792..794 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud274.t1.CDS1	Gcaud274.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_4738_length_2030_cov_6.212481 792..1718 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud274.t1.exon1	Gcaud274.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_4738_length_2030_cov_6.212481 792..1718 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud274.t1.stop1	Gcaud274.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_4738_length_2030_cov_6.212481 1716..1718 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud274.t1	Gcaud274.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_4738_length_2030_cov_6.212481 792..1718 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_4738_length_2030_cov_6.212481:792..1718+
coding sequence from alignment at NODE_4738_length_2030_cov_6.212481:792..1718+

mRNA sequence

>Gcaud274.t1 ID=Gcaud274.t1|Name=Gcaud274.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=309bp
MCFRSSTAFAPPVPPRSPSLVNHNWLSSCPFRPRFSARRRSAARTSTTIT
AEQKRSNESKNNDMDIIERVYTFIFGEKEKEPFGLKRFDRDRFPELYPAT
LDEFAELLPQDVDEMRLFRPLLARTQLQKRALQLLYDANRDGWSSETFHQ
LVNRKGASVVFARSEKAIFGGYNPKGFVGYGESRGSKAAFLFSWPDSDTS
KPAMKMRKVGGAALAVVDQPDTGPKFGADSLVIPLRPPSAGAVDEQRDRT
AFSKLGSYYERRPDGHNCLFGESESGKGTVLTELKVFAGVYEEGEEIPFN
DALPFSLE*

spliced messenger RNA

>Gcaud274.t1 ID=Gcaud274.t1|Name=Gcaud274.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=927bp|location=Sequence derived from alignment at NODE_4738_length_2030_cov_6.212481:792..1718+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTTTCCGATCCTCCACGGCGTTCGCTCCGCCCGTCCCCCCACGCTC
ACCCAGTCTCGTGAACCATAATTGGCTCTCATCATGCCCTTTTCGCCCGC
GTTTCTCTGCGCGTCGACGCTCTGCCGCCAGAACGTCAACCACTATCACA
GCCGAGCAGAAAAGAAGCAATGAGTCCAAGAACAACGACATGGACATCAT
TGAACGGGTGTACACATTCATCTTCGGTGAGAAAGAGAAAGAGCCCTTCG
GTCTCAAACGCTTCGATCGCGACAGGTTTCCGGAATTGTACCCGGCCACG
CTTGATGAATTCGCCGAGCTGCTTCCACAGGACGTCGATGAAATGCGTTT
ATTCCGTCCTCTTTTAGCACGAACTCAGCTTCAAAAACGAGCTTTGCAAC
TCCTCTACGACGCTAACAGAGATGGCTGGAGCAGCGAAACTTTCCATCAA
CTAGTGAATCGAAAGGGTGCCAGCGTTGTATTTGCAAGGTCCGAAAAGGC
GATATTCGGTGGCTATAACCCAAAGGGATTTGTAGGATACGGCGAAAGTA
GAGGTTCAAAGGCCGCGTTTTTGTTCTCTTGGCCGGATTCTGATACTTCT
AAACCGGCCATGAAGATGAGAAAGGTTGGAGGTGCAGCGCTTGCTGTTGT
GGATCAACCTGATACTGGACCCAAGTTTGGTGCTGATAGTCTGGTTATTC
CCTTGCGTCCTCCAAGCGCAGGTGCTGTTGATGAACAACGTGATCGAACG
GCTTTCAGCAAGCTCGGCTCGTACTATGAAAGAAGACCGGATGGTCATAA
TTGTCTGTTTGGCGAAAGTGAAAGCGGTAAGGGAACTGTTTTGACTGAAC
TCAAGGTTTTTGCGGGAGTCTATGAAGAAGGAGAGGAAATTCCTTTCAAT
GACgctcttccatttagtctagagtag

protein sequence of Gcaud274.t1

>Gcaud274.t1 ID=Gcaud274.t1|Name=Gcaud274.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=309bp
MCFRSSTAFAPPVPPRSPSLVNHNWLSSCPFRPRFSARRRSAARTSTTIT
AEQKRSNESKNNDMDIIERVYTFIFGEKEKEPFGLKRFDRDRFPELYPAT
LDEFAELLPQDVDEMRLFRPLLARTQLQKRALQLLYDANRDGWSSETFHQ
LVNRKGASVVFARSEKAIFGGYNPKGFVGYGESRGSKAAFLFSWPDSDTS
KPAMKMRKVGGAALAVVDQPDTGPKFGADSLVIPLRPPSAGAVDEQRDRT
AFSKLGSYYERRPDGHNCLFGESESGKGTVLTELKVFAGVYEEGEEIPFN
DALPFSLE*

mRNA from alignment at NODE_4738_length_2030_cov_6.212481:792..1718+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud274.t1 ID=Gcaud274.t1|Name=Gcaud274.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=927bp|location=Sequence derived from alignment at NODE_4738_length_2030_cov_6.212481:792..1718+ (Gracilaria caudata M_176_S67 male)
ATGTGTTTCCGATCCTCCACGGCGTTCGCTCCGCCCGTCCCCCCACGCTC
ACCCAGTCTCGTGAACCATAATTGGCTCTCATCATGCCCTTTTCGCCCGC
GTTTCTCTGCGCGTCGACGCTCTGCCGCCAGAACGTCAACCACTATCACA
GCCGAGCAGAAAAGAAGCAATGAGTCCAAGAACAACGACATGGACATCAT
TGAACGGGTGTACACATTCATCTTCGGTGAGAAAGAGAAAGAGCCCTTCG
GTCTCAAACGCTTCGATCGCGACAGGTTTCCGGAATTGTACCCGGCCACG
CTTGATGAATTCGCCGAGCTGCTTCCACAGGACGTCGATGAAATGCGTTT
ATTCCGTCCTCTTTTAGCACGAACTCAGCTTCAAAAACGAGCTTTGCAAC
TCCTCTACGACGCTAACAGAGATGGCTGGAGCAGCGAAACTTTCCATCAA
CTAGTGAATCGAAAGGGTGCCAGCGTTGTATTTGCAAGGTCCGAAAAGGC
GATATTCGGTGGCTATAACCCAAAGGGATTTGTAGGATACGGCGAAAGTA
GAGGTTCAAAGGCCGCGTTTTTGTTCTCTTGGCCGGATTCTGATACTTCT
AAACCGGCCATGAAGATGAGAAAGGTTGGAGGTGCAGCGCTTGCTGTTGT
GGATCAACCTGATACTGGACCCAAGTTTGGTGCTGATAGTCTGGTTATTC
CCTTGCGTCCTCCAAGCGCAGGTGCTGTTGATGAACAACGTGATCGAACG
GCTTTCAGCAAGCTCGGCTCGTACTATGAAAGAAGACCGGATGGTCATAA
TTGTCTGTTTGGCGAAAGTGAAAGCGGTAAGGGAACTGTTTTGACTGAAC
TCAAGGTTTTTGCGGGAGTCTATGAAGAAGGAGAGGAAATTCCTTTCAAT
GACgctcttccatttagtctagagtag

Coding sequence (CDS) from alignment at NODE_4738_length_2030_cov_6.212481:792..1718+

>Gcaud274.t1 ID=Gcaud274.t1|Name=Gcaud274.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=927bp|location=Sequence derived from alignment at NODE_4738_length_2030_cov_6.212481:792..1718+ (Gracilaria caudata M_176_S67 male)
ATGTGTTTCCGATCCTCCACGGCGTTCGCTCCGCCCGTCCCCCCACGCTC
ACCCAGTCTCGTGAACCATAATTGGCTCTCATCATGCCCTTTTCGCCCGC
GTTTCTCTGCGCGTCGACGCTCTGCCGCCAGAACGTCAACCACTATCACA
GCCGAGCAGAAAAGAAGCAATGAGTCCAAGAACAACGACATGGACATCAT
TGAACGGGTGTACACATTCATCTTCGGTGAGAAAGAGAAAGAGCCCTTCG
GTCTCAAACGCTTCGATCGCGACAGGTTTCCGGAATTGTACCCGGCCACG
CTTGATGAATTCGCCGAGCTGCTTCCACAGGACGTCGATGAAATGCGTTT
ATTCCGTCCTCTTTTAGCACGAACTCAGCTTCAAAAACGAGCTTTGCAAC
TCCTCTACGACGCTAACAGAGATGGCTGGAGCAGCGAAACTTTCCATCAA
CTAGTGAATCGAAAGGGTGCCAGCGTTGTATTTGCAAGGTCCGAAAAGGC
GATATTCGGTGGCTATAACCCAAAGGGATTTGTAGGATACGGCGAAAGTA
GAGGTTCAAAGGCCGCGTTTTTGTTCTCTTGGCCGGATTCTGATACTTCT
AAACCGGCCATGAAGATGAGAAAGGTTGGAGGTGCAGCGCTTGCTGTTGT
GGATCAACCTGATACTGGACCCAAGTTTGGTGCTGATAGTCTGGTTATTC
CCTTGCGTCCTCCAAGCGCAGGTGCTGTTGATGAACAACGTGATCGAACG
GCTTTCAGCAAGCTCGGCTCGTACTATGAAAGAAGACCGGATGGTCATAA
TTGTCTGTTTGGCGAAAGTGAAAGCGGTAAGGGAACTGTTTTGACTGAAC
TCAAGGTTTTTGCGGGAGTCTATGAAGAAGGAGAGGAAATTCCTTTCAAT
GACgctcttccatttagtctagagtag