Gcaud2738.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2738.t1
Unique NameGcaud2738.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length346
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1014_length_15058_cov_4.199439contigNODE_1014_length_15058_cov_4.199439:947..1984 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703528.1
Preferred nameVRG4
PFAMsEamA,TPT,UAA
Max annot lvl2759|Eukaryota
KEGG koko:K14835,ko:K15356
KEGG TC2.A.7.13
GOsGO:0000139,GO:0000271,GO:0003674,GO:0005215,GO:0005338,GO:0005458,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005794,GO:0005975,GO:0005976,GO:0006464,GO:0006486,GO:0006487,GO:0006807,GO:0006810,GO:0007163,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009272,GO:0009987,GO:0010383,GO:0012505,GO:0015780,GO:0015931,GO:0015932,GO:0016020,GO:0016021,GO:0016051,GO:0019538,GO:0022857,GO:0030447,GO:0030448,GO:0031090,GO:0031224,GO:0031984,GO:0033692,GO:0034637,GO:0034645,GO:0036080,GO:0036211,GO:0040007,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051234,GO:0051278,GO:0055085,GO:0070085,GO:0070589,GO:0070592,GO:0071554,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071852,GO:0071966,GO:0090480,GO:0098588,GO:0098791,GO:1901135,GO:1901137,GO:1901264,GO:1901505,GO:1901564,GO:1901566,GO:1901576,GO:1990570
Evalue1.18e-37
EggNOG OGsCOG5070@1|root,KOG1444@2759|Eukaryota
EC2.1.1.310
Descriptionnucleotide-sugar transmembrane transporter activity
COG categoryGOU
BRITEko00000,ko01000,ko02000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2738Gcaud2738Gracilaria caudata M_176_S67 malegeneNODE_1014_length_15058_cov_4.199439 947..1984 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2738.t1.stop1Gcaud2738.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1014_length_15058_cov_4.199439 947..949 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2738.t1.CDS1Gcaud2738.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1014_length_15058_cov_4.199439 947..1984 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2738.t1.exon1Gcaud2738.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1014_length_15058_cov_4.199439 947..1984 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2738.t1.start1Gcaud2738.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1014_length_15058_cov_4.199439 1982..1984 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2738.t1Gcaud2738.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1014_length_15058_cov_4.199439 947..1984 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2738.t1 ID=Gcaud2738.t1|Name=Gcaud2738.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=346bp
MAAQPAKSLLFPMRVIALTPLLACLAYVTTSTSLTLANKLIFSHSLDYPW
ALLSFQSLGVTILLSILQLARRTSPISLPLLRQIFVPCLLFTLYIFTNAR
ALRVVSLPVLSVLKSMAPMGIALMERALFSDPITPATAGAMLLIVAANAV
TAVTDLDYSLIGYAWAMANVVINILYVLSLRACLSDSFTPVQKTLHANLV
AASLMMPVALASNQLVPFIQQFPTSPVGFRHVYILSSALAAAIGISIFWL
VSVTSGSTLSFLGACNKFSVVLLGALLFNTNISTLGWISITGGVLAGILF
AISKAYPQPSVGLSKAPKQPSTVVDLECECKPLHDDVVLPLDDKP*
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spliced messenger RNA

>Gcaud2738.t1 ID=Gcaud2738.t1|Name=Gcaud2738.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1038bp|location=Sequence derived from alignment at NODE_1014_length_15058_cov_4.199439:947..1984- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCGCAGCCCGCGAAGTCGCTCTTGTTTCCGATGCGAGTCATTGC
GCTCACCCCGTTGCTCGCCTGTCTGGCGTATGTCACCACCTCTACGTCGC
TCACTCTCGCAAACAAATTGATCTTCTCCCATTCTCTTGACTATCCCTGG
GCCTTACTTTCCTTCCAATCCCTCGGAGTGACTATCCTGCTTTCGATCCT
GCAGCTTGCTCGACGAACTTCTCCCATCTCTCTGCCGCTGTTACGACAGA
TTTTTGTGCCATGTTTACTCTTTACTCTGTACATCTTCACTAACGCGCGT
GCCCTACGTGTAGTGTCTTTGCCGGTGTTGTCGGTGCTCAAGAGCATGGC
GCCTATGGGCATTGCGCTCATGGAACGAGCGCTCTTCTCAGACCCTATAA
CGCCTGCCACCGCCGGTGCAATGTTGCTCATCGTTGCTGCTAACGCCGTC
ACAGCCGTCACAGATCTCGACTACAGTCTGATCGGCTATGCATGGGCCAT
GGCCAACGTCGTCATTAACATTCTCTACGTGCTTTCGCTTCGTGCGTGTC
TTTCAGATTCTTTCACCCCCGTTCAGAAGACTTTGCATGCAAATCTTGTT
GCCGCCTCTCTCATGATGCCTGTTGCGCTCGCATCCAACCAACTTGTACC
GTTTATCCAACAATTCCCAACTTCCCCTGTCGGATTCCGCCATGTATACA
TCCTATCGTCAGCGCTCGCAGCTGCAATCGGCATATCAATCTTCTGGCTC
GTATCCGTCACTTCGGGCAGCACACTAAGCTTTCTGGGCGCGTGCAACAA
ATTTTCAGTGGTGCTACTAGGCGCACTATTGTTTAATACTAACATCAGCA
CGTTGGGTTGGATCAGCATAACAGGCGGTGTGCTCGCTGGCATTCTGTTC
GCCATCTCCAAGGCGTATCCTCAGCCTTCTGTCGGGCTTTCGAAAGCTCC
GAAACAACCATCAACCGTGGTGGACTTGGAATGCGAGTGCAAACCTCTAC
ATGACGATGTCGTGTTACCCCTCGACGACAAGCCTTAA
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protein sequence of Gcaud2738.t1

>Gcaud2738.t1 ID=Gcaud2738.t1|Name=Gcaud2738.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=346bp
MAAQPAKSLLFPMRVIALTPLLACLAYVTTSTSLTLANKLIFSHSLDYPW
ALLSFQSLGVTILLSILQLARRTSPISLPLLRQIFVPCLLFTLYIFTNAR
ALRVVSLPVLSVLKSMAPMGIALMERALFSDPITPATAGAMLLIVAANAV
TAVTDLDYSLIGYAWAMANVVINILYVLSLRACLSDSFTPVQKTLHANLV
AASLMMPVALASNQLVPFIQQFPTSPVGFRHVYILSSALAAAIGISIFWL
VSVTSGSTLSFLGACNKFSVVLLGALLFNTNISTLGWISITGGVLAGILF
AISKAYPQPSVGLSKAPKQPSTVVDLECECKPLHDDVVLPLDDKP*
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mRNA from alignment at NODE_1014_length_15058_cov_4.199439:947..1984-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2738.t1 ID=Gcaud2738.t1|Name=Gcaud2738.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1038bp|location=Sequence derived from alignment at NODE_1014_length_15058_cov_4.199439:947..1984- (Gracilaria caudata M_176_S67 male)
ATGGCCGCGCAGCCCGCGAAGTCGCTCTTGTTTCCGATGCGAGTCATTGC
GCTCACCCCGTTGCTCGCCTGTCTGGCGTATGTCACCACCTCTACGTCGC
TCACTCTCGCAAACAAATTGATCTTCTCCCATTCTCTTGACTATCCCTGG
GCCTTACTTTCCTTCCAATCCCTCGGAGTGACTATCCTGCTTTCGATCCT
GCAGCTTGCTCGACGAACTTCTCCCATCTCTCTGCCGCTGTTACGACAGA
TTTTTGTGCCATGTTTACTCTTTACTCTGTACATCTTCACTAACGCGCGT
GCCCTACGTGTAGTGTCTTTGCCGGTGTTGTCGGTGCTCAAGAGCATGGC
GCCTATGGGCATTGCGCTCATGGAACGAGCGCTCTTCTCAGACCCTATAA
CGCCTGCCACCGCCGGTGCAATGTTGCTCATCGTTGCTGCTAACGCCGTC
ACAGCCGTCACAGATCTCGACTACAGTCTGATCGGCTATGCATGGGCCAT
GGCCAACGTCGTCATTAACATTCTCTACGTGCTTTCGCTTCGTGCGTGTC
TTTCAGATTCTTTCACCCCCGTTCAGAAGACTTTGCATGCAAATCTTGTT
GCCGCCTCTCTCATGATGCCTGTTGCGCTCGCATCCAACCAACTTGTACC
GTTTATCCAACAATTCCCAACTTCCCCTGTCGGATTCCGCCATGTATACA
TCCTATCGTCAGCGCTCGCAGCTGCAATCGGCATATCAATCTTCTGGCTC
GTATCCGTCACTTCGGGCAGCACACTAAGCTTTCTGGGCGCGTGCAACAA
ATTTTCAGTGGTGCTACTAGGCGCACTATTGTTTAATACTAACATCAGCA
CGTTGGGTTGGATCAGCATAACAGGCGGTGTGCTCGCTGGCATTCTGTTC
GCCATCTCCAAGGCGTATCCTCAGCCTTCTGTCGGGCTTTCGAAAGCTCC
GAAACAACCATCAACCGTGGTGGACTTGGAATGCGAGTGCAAACCTCTAC
ATGACGATGTCGTGTTACCCCTCGACGACAAGCCTTAA
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Coding sequence (CDS) from alignment at NODE_1014_length_15058_cov_4.199439:947..1984-

>Gcaud2738.t1 ID=Gcaud2738.t1|Name=Gcaud2738.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1038bp|location=Sequence derived from alignment at NODE_1014_length_15058_cov_4.199439:947..1984- (Gracilaria caudata M_176_S67 male)
ATGGCCGCGCAGCCCGCGAAGTCGCTCTTGTTTCCGATGCGAGTCATTGC
GCTCACCCCGTTGCTCGCCTGTCTGGCGTATGTCACCACCTCTACGTCGC
TCACTCTCGCAAACAAATTGATCTTCTCCCATTCTCTTGACTATCCCTGG
GCCTTACTTTCCTTCCAATCCCTCGGAGTGACTATCCTGCTTTCGATCCT
GCAGCTTGCTCGACGAACTTCTCCCATCTCTCTGCCGCTGTTACGACAGA
TTTTTGTGCCATGTTTACTCTTTACTCTGTACATCTTCACTAACGCGCGT
GCCCTACGTGTAGTGTCTTTGCCGGTGTTGTCGGTGCTCAAGAGCATGGC
GCCTATGGGCATTGCGCTCATGGAACGAGCGCTCTTCTCAGACCCTATAA
CGCCTGCCACCGCCGGTGCAATGTTGCTCATCGTTGCTGCTAACGCCGTC
ACAGCCGTCACAGATCTCGACTACAGTCTGATCGGCTATGCATGGGCCAT
GGCCAACGTCGTCATTAACATTCTCTACGTGCTTTCGCTTCGTGCGTGTC
TTTCAGATTCTTTCACCCCCGTTCAGAAGACTTTGCATGCAAATCTTGTT
GCCGCCTCTCTCATGATGCCTGTTGCGCTCGCATCCAACCAACTTGTACC
GTTTATCCAACAATTCCCAACTTCCCCTGTCGGATTCCGCCATGTATACA
TCCTATCGTCAGCGCTCGCAGCTGCAATCGGCATATCAATCTTCTGGCTC
GTATCCGTCACTTCGGGCAGCACACTAAGCTTTCTGGGCGCGTGCAACAA
ATTTTCAGTGGTGCTACTAGGCGCACTATTGTTTAATACTAACATCAGCA
CGTTGGGTTGGATCAGCATAACAGGCGGTGTGCTCGCTGGCATTCTGTTC
GCCATCTCCAAGGCGTATCCTCAGCCTTCTGTCGGGCTTTCGAAAGCTCC
GAAACAACCATCAACCGTGGTGGACTTGGAATGCGAGTGCAAACCTCTAC
ATGACGATGTCGTGTTACCCCTCGACGACAAGCCTTAA
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