Gcaud2730.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2730.t1
Unique NameGcaud2730.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length226
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2051_length_7049_cov_4.980310contigNODE_2051_length_7049_cov_4.980310:3510..4187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog93612.XP_008026172.1
PFAMsMethyltransf_11,Methyltransf_25
Max annot lvl4751|Fungi
Evalue1.24e-21
EggNOG OGsCOG0500@1|root,KOG1541@2759|Eukaryota,3A87M@33154|Opisthokonta,3P4KB@4751|Fungi
DescriptionMethyltransferase domain
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2730Gcaud2730Gracilaria caudata M_176_S67 malegeneNODE_2051_length_7049_cov_4.980310 3510..4187 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2730.t1.start1Gcaud2730.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2051_length_7049_cov_4.980310 3510..3512 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2730.t1.CDS1Gcaud2730.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2051_length_7049_cov_4.980310 3510..4187 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2730.t1.exon1Gcaud2730.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2051_length_7049_cov_4.980310 3510..4187 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2730.t1.stop1Gcaud2730.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2051_length_7049_cov_4.980310 4185..4187 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2730.t1Gcaud2730.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2051_length_7049_cov_4.980310 3510..4187 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2730.t1 ID=Gcaud2730.t1|Name=Gcaud2730.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=226bp
MSHTQDQQTFRDKPYEFIISSIPKEEKVAKYDMWALKYDNDLEADNISWW
HIASSTLFSLLKANHYASNMPVVVDAGCGTGSAGVVIRKMADEFALPIKL
VGYDYSEGMVAEARKKNVYTELHVGDFFGQVPIEVQSADYLICAGVFLEG
HCRPEALLKILSHLKRGGVGVITIRITSYETRKAEYESLIEQGGCVISDI
SIDDYLGPVKGVRHSSQVVGQDARG*
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spliced messenger RNA

>Gcaud2730.t1 ID=Gcaud2730.t1|Name=Gcaud2730.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=678bp|location=Sequence derived from alignment at NODE_2051_length_7049_cov_4.980310:3510..4187+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCACACTCAGGACCAGCAGACTTTTAGAGATAAACCATATGAATT
CATTATATCTTCGATACCAAAGGAGGAAAAGGTTGCAAAATACGACATGT
GGGCACTCAAATATGACAACGACTTGGAGGCAGACAACATCTCTTGGTGG
CACATCGCAAGCTCAACGTTGTTCTCTCTCCTCAAGGCAAATCATTATGC
TTCGAATATGCCAGTAGTCGTGGACGCAGGTTGCGGCACTGGAAGTGCTG
GTGTGGTGATTCGAAAGATGGCCGACGAGTTTGCGCTGCCAATTAAACTT
GTAGGTTACGACTACAGCGAAGGTATGGTTGCGGAGGCTCGAAAGAAGAA
TGTCTACACAGAGTTGCACGTTGGCGATTTCTTCGGACAAGTGCCAATCG
AAGTCCAGAGCGCAGATTACTTAATTTGTGCTGGCGTGTTCTTGGAAGGT
CATTGTCGCCCCGAGGCACTTTTGAAGATTCTGAGTCACCTCAAGAGGGG
AGGCGTGGGAGTAATCACCATTCGAATCACTTCGTACGAGACGAGGAAGG
CAGAGTATGAGTCGTTAATTGAGCAAGGAGGTTGTGTAATATCTGATATC
TCGATAGATGATTACCTAGGACCTGTGAAAGGCGTACGTCACAGTTCGCA
AGTTGTAGGCCAAGATGCAAGGGGTTGA
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protein sequence of Gcaud2730.t1

>Gcaud2730.t1 ID=Gcaud2730.t1|Name=Gcaud2730.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=226bp
MSHTQDQQTFRDKPYEFIISSIPKEEKVAKYDMWALKYDNDLEADNISWW
HIASSTLFSLLKANHYASNMPVVVDAGCGTGSAGVVIRKMADEFALPIKL
VGYDYSEGMVAEARKKNVYTELHVGDFFGQVPIEVQSADYLICAGVFLEG
HCRPEALLKILSHLKRGGVGVITIRITSYETRKAEYESLIEQGGCVISDI
SIDDYLGPVKGVRHSSQVVGQDARG*
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mRNA from alignment at NODE_2051_length_7049_cov_4.980310:3510..4187+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2730.t1 ID=Gcaud2730.t1|Name=Gcaud2730.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=678bp|location=Sequence derived from alignment at NODE_2051_length_7049_cov_4.980310:3510..4187+ (Gracilaria caudata M_176_S67 male)
ATGTCGCACACTCAGGACCAGCAGACTTTTAGAGATAAACCATATGAATT
CATTATATCTTCGATACCAAAGGAGGAAAAGGTTGCAAAATACGACATGT
GGGCACTCAAATATGACAACGACTTGGAGGCAGACAACATCTCTTGGTGG
CACATCGCAAGCTCAACGTTGTTCTCTCTCCTCAAGGCAAATCATTATGC
TTCGAATATGCCAGTAGTCGTGGACGCAGGTTGCGGCACTGGAAGTGCTG
GTGTGGTGATTCGAAAGATGGCCGACGAGTTTGCGCTGCCAATTAAACTT
GTAGGTTACGACTACAGCGAAGGTATGGTTGCGGAGGCTCGAAAGAAGAA
TGTCTACACAGAGTTGCACGTTGGCGATTTCTTCGGACAAGTGCCAATCG
AAGTCCAGAGCGCAGATTACTTAATTTGTGCTGGCGTGTTCTTGGAAGGT
CATTGTCGCCCCGAGGCACTTTTGAAGATTCTGAGTCACCTCAAGAGGGG
AGGCGTGGGAGTAATCACCATTCGAATCACTTCGTACGAGACGAGGAAGG
CAGAGTATGAGTCGTTAATTGAGCAAGGAGGTTGTGTAATATCTGATATC
TCGATAGATGATTACCTAGGACCTGTGAAAGGCGTACGTCACAGTTCGCA
AGTTGTAGGCCAAGATGCAAGGGGTTGA
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Coding sequence (CDS) from alignment at NODE_2051_length_7049_cov_4.980310:3510..4187+

>Gcaud2730.t1 ID=Gcaud2730.t1|Name=Gcaud2730.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=678bp|location=Sequence derived from alignment at NODE_2051_length_7049_cov_4.980310:3510..4187+ (Gracilaria caudata M_176_S67 male)
ATGTCGCACACTCAGGACCAGCAGACTTTTAGAGATAAACCATATGAATT
CATTATATCTTCGATACCAAAGGAGGAAAAGGTTGCAAAATACGACATGT
GGGCACTCAAATATGACAACGACTTGGAGGCAGACAACATCTCTTGGTGG
CACATCGCAAGCTCAACGTTGTTCTCTCTCCTCAAGGCAAATCATTATGC
TTCGAATATGCCAGTAGTCGTGGACGCAGGTTGCGGCACTGGAAGTGCTG
GTGTGGTGATTCGAAAGATGGCCGACGAGTTTGCGCTGCCAATTAAACTT
GTAGGTTACGACTACAGCGAAGGTATGGTTGCGGAGGCTCGAAAGAAGAA
TGTCTACACAGAGTTGCACGTTGGCGATTTCTTCGGACAAGTGCCAATCG
AAGTCCAGAGCGCAGATTACTTAATTTGTGCTGGCGTGTTCTTGGAAGGT
CATTGTCGCCCCGAGGCACTTTTGAAGATTCTGAGTCACCTCAAGAGGGG
AGGCGTGGGAGTAATCACCATTCGAATCACTTCGTACGAGACGAGGAAGG
CAGAGTATGAGTCGTTAATTGAGCAAGGAGGTTGTGTAATATCTGATATC
TCGATAGATGATTACCTAGGACCTGTGAAAGGCGTACGTCACAGTTCGCA
AGTTGTAGGCCAAGATGCAAGGGGTTGA
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