Gcaud2728.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2728.t1
Unique NameGcaud2728.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length236
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_4106_length_2573_cov_5.608380contigNODE_4106_length_2573_cov_5.608380:1273..2069 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706792.1
PFAMsM16C_assoc,Peptidase_M16,Peptidase_M16_C
Max annot lvl2759|Eukaryota
KEGG koko:K06972
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0010035,GO:0010038,GO:0010467,GO:0016485,GO:0016787,GO:0019538,GO:0031967,GO:0031974,GO:0031975,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044238,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0048046,GO:0050896,GO:0051604,GO:0070011,GO:0070013,GO:0071704,GO:0140096,GO:1901564
Evalue1.3e-85
EggNOG OGsCOG1026@1|root,KOG2019@2759|Eukaryota
Descriptionmetallopeptidase activity
COG categoryT
BRITEko00000,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2728Gcaud2728Gracilaria caudata M_176_S67 malegeneNODE_4106_length_2573_cov_5.608380 1273..2069 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2728.t1Gcaud2728.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_4106_length_2573_cov_5.608380 1273..2069 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2728.t1.start1Gcaud2728.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_4106_length_2573_cov_5.608380 1273..1275 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2728.t1.CDS1Gcaud2728.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_4106_length_2573_cov_5.608380 1273..1533 +
Gcaud2728.t1.CDS2Gcaud2728.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_4106_length_2573_cov_5.608380 1623..2069 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2728.t1.exon1Gcaud2728.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_4106_length_2573_cov_5.608380 1273..1533 +
Gcaud2728.t1.exon2Gcaud2728.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_4106_length_2573_cov_5.608380 1623..2069 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2728.t1.intron1Gcaud2728.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_4106_length_2573_cov_5.608380 1534..1622 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2728.t1.stop1Gcaud2728.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_4106_length_2573_cov_5.608380 2067..2069 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2728.t1 ID=Gcaud2728.t1|Name=Gcaud2728.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=236bp
MVRFWVHEKTGARLISVLNDEENKTFDVIFRTLPRDSTRVAHILEHSVLC
GSEKYPVKEPFVELMKGSLNTFQNAFTFPDKTCYLWLEGHHLELEDPNGK
VTIKGVVYNEMKGAYSSSDRLLAELSQRVSFPNTIYGVESGGHPRDIPNL
TWEKFKGFYDDYYHPANARMWFYGDDEEFKRLAKVDSFLKDFERRPVSSA
VGLQESWTEPKSFEFGYDAASGSDTGKRIWPQSTG*
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spliced messenger RNA

>Gcaud2728.t1 ID=Gcaud2728.t1|Name=Gcaud2728.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=708bp|location=Sequence derived from alignment at NODE_4106_length_2573_cov_5.608380:1273..2069+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCGCTTTTGGGTACATGAGAAGACTGGTGCTCGTCTCATAAGTGT
ATTGAACGATGAAGAGAACAAGACTTTCGACGTTATTTTCCGTACTCTGC
CAAGAGATTCTACTCGCGTGGCACATATCCTGGAGCATTCCGTGCTTTGC
GGAAGCGAAAAGTATCCAGTGAAAGAGCCGTTCGTGGAACTCATGAAGGG
TTCTCTGAACACCTTCCAGAATGCGTTTACGTTTCCAGATAAGACATGCT
ATCTGTGGCTAGAAGGTCACCACCTTGAACTCGAAGATCCAAACGGGAAg
gtcacgataaaaggtgtagtgtacaatgaaatgaagggtgcttactcatc
atctgatcgcttgttggcagagctttcACAGAGAGTGTCGTTCCCGAATA
CCATCTACGGAGTAGAATCGGGTGGACATCCTCGCGACATTCCGAATCTA
ACCTGGGAGAAGTTCAAGGGCTTTTACGACGACTATTATCATCCCGCTAA
CGCCCGTATGTGGTTCTACGGTGATGATGAAGAGTTCAAGAGACTTGCCA
AGGTGGACAGTTTCCTGAAGGACTTTGAGAGGCGCCCCGTTTCATCAGCC
GTTGGTCTTCAAGAGTCATGGACGGAACCGAAATCATTTGAATTTGGATA
TGACGCAGCTTCCGGATCTGATACTGGAAAAAGAATATGGCCACAATCAA
CTGGCTAA
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protein sequence of Gcaud2728.t1

>Gcaud2728.t1 ID=Gcaud2728.t1|Name=Gcaud2728.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=236bp
MVRFWVHEKTGARLISVLNDEENKTFDVIFRTLPRDSTRVAHILEHSVLC
GSEKYPVKEPFVELMKGSLNTFQNAFTFPDKTCYLWLEGHHLELEDPNGK
VTIKGVVYNEMKGAYSSSDRLLAELSQRVSFPNTIYGVESGGHPRDIPNL
TWEKFKGFYDDYYHPANARMWFYGDDEEFKRLAKVDSFLKDFERRPVSSA
VGLQESWTEPKSFEFGYDAASGSDTGKRIWPQSTG*
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mRNA from alignment at NODE_4106_length_2573_cov_5.608380:1273..2069+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2728.t1 ID=Gcaud2728.t1|Name=Gcaud2728.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=797bp|location=Sequence derived from alignment at NODE_4106_length_2573_cov_5.608380:1273..2069+ (Gracilaria caudata M_176_S67 male)
ATGGTGCGCTTTTGGGTACATGAGAAGACTGGTGCTCGTCTCATAAGTGT
ATTGAACGATGAAGAGAACAAGACTTTCGACGTTATTTTCCGTACTCTGC
CAAGAGATTCTACTCGCGTGGCACATATCCTGGAGCATTCCGTGCTTTGC
GGAAGCGAAAAGTATCCAGTGAAAGAGCCGTTCGTGGAACTCATGAAGGG
TTCTCTGAACACCTTCCAGAATGCGTTTACGTTTCCAGATAAGACATGCT
ATCTGTGGCTAGTTGCAATGAACGCGATTTCTACAACTTAGTGGACGTTT
ATATGAAAGCTGTTTTCCATCCAAATCTCACTCCCGACACACTTGCCCAG
GAAGGTCACCACCTTGAACTCGAAGATCCAAACGGGAAggtcacgataaa
aggtgtagtgtacaatgaaatgaagggtgcttactcatcatctgatcgct
tgttggcagagctttcACAGAGAGTGTCGTTCCCGAATACCATCTACGGA
GTAGAATCGGGTGGACATCCTCGCGACATTCCGAATCTAACCTGGGAGAA
GTTCAAGGGCTTTTACGACGACTATTATCATCCCGCTAACGCCCGTATGT
GGTTCTACGGTGATGATGAAGAGTTCAAGAGACTTGCCAAGGTGGACAGT
TTCCTGAAGGACTTTGAGAGGCGCCCCGTTTCATCAGCCGTTGGTCTTCA
AGAGTCATGGACGGAACCGAAATCATTTGAATTTGGATATGACGCAGCTT
CCGGATCTGATACTGGAAAAAGAATATGGCCACAATCAACTGGCTAA
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Coding sequence (CDS) from alignment at NODE_4106_length_2573_cov_5.608380:1273..2069+

>Gcaud2728.t1 ID=Gcaud2728.t1|Name=Gcaud2728.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=708bp|location=Sequence derived from alignment at NODE_4106_length_2573_cov_5.608380:1273..2069+ (Gracilaria caudata M_176_S67 male)
ATGGTGCGCTTTTGGGTACATGAGAAGACTGGTGCTCGTCTCATAAGTGT
ATTGAACGATGAAGAGAACAAGACTTTCGACGTTATTTTCCGTACTCTGC
CAAGAGATTCTACTCGCGTGGCACATATCCTGGAGCATTCCGTGCTTTGC
GGAAGCGAAAAGTATCCAGTGAAAGAGCCGTTCGTGGAACTCATGAAGGG
TTCTCTGAACACCTTCCAGAATGCGTTTACGTTTCCAGATAAGACATGCT
ATCTGTGGCTAGAAGGTCACCACCTTGAACTCGAAGATCCAAACGGGAAg
gtcacgataaaaggtgtagtgtacaatgaaatgaagggtgcttactcatc
atctgatcgcttgttggcagagctttcACAGAGAGTGTCGTTCCCGAATA
CCATCTACGGAGTAGAATCGGGTGGACATCCTCGCGACATTCCGAATCTA
ACCTGGGAGAAGTTCAAGGGCTTTTACGACGACTATTATCATCCCGCTAA
CGCCCGTATGTGGTTCTACGGTGATGATGAAGAGTTCAAGAGACTTGCCA
AGGTGGACAGTTTCCTGAAGGACTTTGAGAGGCGCCCCGTTTCATCAGCC
GTTGGTCTTCAAGAGTCATGGACGGAACCGAAATCATTTGAATTTGGATA
TGACGCAGCTTCCGGATCTGATACTGGAAAAAGAATATGGCCACAATCAA
CTGGCTAA
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