Gcaud2712.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2712.t1
Unique Name	Gcaud2712.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	545

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_12_length_86746_cov_4.301944	contig	NODE_12_length_86746_cov_4.301944:72367..74001 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	9823.ENSSSCP00000004806
Preferred name	PGM3
PFAMs	PGM_PMM_I,PGM_PMM_III,PGM_PMM_IV
Max annot lvl	33208\|Metazoa
KEGG rclass	RC00408
KEGG ko	ko:K01836
KEGG Reaction	R08193
KEGG Pathway	ko00520,ko01100,ko01130,map00520,map01100,map01130
GOs	GO:0000003,GO:0001704,GO:0001707,GO:0002376,GO:0002520,GO:0003674,GO:0003824,GO:0004610,GO:0004614,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006040,GO:0006041,GO:0006047,GO:0006048,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006493,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0007276,GO:0007283,GO:0007369,GO:0007498,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009226,GO:0009653,GO:0009790,GO:0009888,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0016853,GO:0016866,GO:0016868,GO:0018130,GO:0019255,GO:0019438,GO:0019538,GO:0019637,GO:0019953,GO:0022414,GO:0023051,GO:0023056,GO:0030097,GO:0032501,GO:0032502,GO:0032504,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0040036,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045743,GO:0046349,GO:0046483,GO:0048232,GO:0048332,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048583,GO:0048584,GO:0048598,GO:0048609,GO:0048646,GO:0048729,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051704,GO:0055086,GO:0060438,GO:0060541,GO:0065007,GO:0070085,GO:0071704,GO:0090287,GO:1901071,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue	4.09e-115
EggNOG OGs	COG1109@1\|root,KOG2537@2759\|Eukaryota,38CHB@33154\|Opisthokonta,3BFTW@33208\|Metazoa,3CRUW@33213\|Bilateria,488ZQ@7711\|Chordata,48W1U@7742\|Vertebrata,3J78P@40674\|Mammalia,4J43J@91561\|Cetartiodactyla
EC	5.4.2.3
Description	Catalyzes the conversion of GlcNAc-6-P into GlcNAc-1-P during the synthesis of uridine diphosphate UDP-GlcNAc, a sugar nucleotide critical to multiple glycosylation pathways including protein N- and O-glycosylation
COG category	G
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2712	Gcaud2712	Gracilaria caudata M_176_S67 male	gene	NODE_12_length_86746_cov_4.301944 72367..74001 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2712.t1.stop1	Gcaud2712.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_12_length_86746_cov_4.301944 72367..72369 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2712.t1.CDS1	Gcaud2712.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_12_length_86746_cov_4.301944 72367..74001 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2712.t1.exon1	Gcaud2712.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_12_length_86746_cov_4.301944 72367..74001 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2712.t1.start1	Gcaud2712.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_12_length_86746_cov_4.301944 73999..74001 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2712.t1	Gcaud2712.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_12_length_86746_cov_4.301944 72367..74001 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_12_length_86746_cov_4.301944:72367..74001-
coding sequence from alignment at NODE_12_length_86746_cov_4.301944:72367..74001-

mRNA sequence

>Gcaud2712.t1 ID=Gcaud2712.t1|Name=Gcaud2712.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=545bp
MFFPNAKLKLTALSDLDSLLGHRHHPAHLAYGTAGFRGLATSLYEAVLRC
GVLAACRSHVLDGKAVGVMVTASHNPPADNGLKLVEPDGSMLDPEWEQLA
TEFVNASRNPARTLQNFVSVGEVSIAGKATVVVGRDSRDSSLTLVDLVVQ
GVEAVGGRVVHVGLVTTPQLHFSVRARHRGDPCNILHYYENMKKAYAELT
GSKHFSASVAVDCANGVGATAVKGVKGLLPNLFAVNKPGDGPLNHECGAD
FVQKRRRPPVLYNDKECRADIWASLDGDADRLVMYRNSESGFVLADGDRF
AALVATFVSKHIAATGISTMTIGVAQTAYSNGAATQYLEALSGVDIVIAK
TGVKHLEKAVRAYDIGIYWEPNGHGTVLFSEKAISELRKCANTSGDDTQC
GEKIDSVSTLLAVSRLANQAVGDGVADLLLICGILCKEDMTLDSWLQLYD
ERCSSNMIVRVQDKNVIVTEDCDRSVKEPDALRTSIKTITSGNGCRGFVR
PSGTEDVVRIYAEAPVGGEELAKEMALRISQMVYDSCGGIGTRP*

spliced messenger RNA

>Gcaud2712.t1 ID=Gcaud2712.t1|Name=Gcaud2712.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1635bp|location=Sequence derived from alignment at NODE_12_length_86746_cov_4.301944:72367..74001- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCTTCCCAAACGCAAAGCTCAAGCTCACAGCGTTGTCAGACCTTGA
CAGCCTTCTCGGTCACCGCCATCATCCAGCCCACCTCGCTTATGGCACCG
CCGGATTTCGTGGTCTAGCCACCAGTCTATACGAGGCCGTGCTCCGATGC
GGCGTTCTAGCAGCGTGCAGATCTCACGTACTCGACGGAAAAGCGGTCGG
TGTGATGGTCACTGCTTCTCACAACCCACCCGCTGATAATGGTCTCAAGC
TTGTTGAGCCAGACGGCTCTATGCTGGATCCCGAGTGGGAGCAACTGGCC
ACCGAATTTGTCAATGCCTCGCGTAATCCAGCCCGTACACTACAGAATTT
TGTATCCGTTGGCGAGGTTTCCATTGCGGGAAAGGCCACAGTGGTGGTCG
GCCGTGATTCTCGCGATAGCTCTTTAACTCTCGTTGACCTCGTCGTTCAA
GGTGTGGAGGCAGTTGGTGGTCGTGTAGTGCACGTAGGACTTGTGACAAC
CCCTCAGTTACACTTCTCGGTGCGTGCTCGGCACCGCGGTGATCCGTGTA
ACATTCTCCATTACTATGAGAATATGAAGAAAGCTTACGCTGAACTAACC
GGAAGCAAGCATTTCTCTGCTTCAGTTGCAGTAGACTGTGCAAACGGTGT
AGGGGCAACTGCTGTGAAAGGTGTTAAAGGCCTTTTACCAAACCTTTTTG
CTGTGAACAAACCAGGAGACGGACCTCTAAACCACGAGTGCGGAGCCGAT
TTTGTTCAAAAGAGACGCCGTCCGCCAGTTCTATATAACGACAAGGAATG
CAGAGCTGACATTTGGGCGTCTCTTGATGGTGATGCAGACCGTCTCGTCA
TGTATCGGAACAGCGAAAGCGGCTTTGTTCTCGCAGACGGTGATCGTTTT
GCAGCGCTCGTTGCAACATTCGTCTCCAAACACATTGCGGCAACTGGCAT
TTCAACAATGACTATTGGTGTTGCTCAAACAGCATACTCGAACGGGGCGG
CGACGCAATATCTCGAGGCCCTTTCGGGAGTAGATATTGTAATCGCAAAA
ACAGGTGTCAAACATTTGGAAAAGGCGGTCCGAGCGTACGATATCGGCAT
CTATTGGGAGCCAAATGGCCACGGAACGGTGCTTTTCAGTGAGAAGGCAA
TAAGCGAGCTAAGAAAGTGCGCGAACACGTCAGGAGACGACACTCAATGC
GGCGAAAAGATTGATAGCGTATCGACGCTTCTTGCCGTTAGCCGACTTGC
CAACCAGGCAGTAGGTGACGGTGTGGCTGACTTGTTGCTGATATGCGGTA
TTCTTTGCAAGGAAGACATGACTTTGGATTCCTGGTTGCAACTGTATGAT
GAGCGATGTAGTAGCAATATGATCGTTCGTGTACAGGACAAGAATGTGAT
TGTTACTGAGGATTGTGATCGATCTGTGAAAGAACCAGATGCTCTGCGGA
CATCCATCAAAACAATTACGTCTGGAAATGGTTGCAGGGGTTTTGTTAGA
CCAAGCGGAACGGAAGATGTTGTTCGGATATATGCTGAGGCGCCAGTTGG
TGGAGAGGAATTGGCGAAGGAGATGGCATTACGAATCAGTCAAATGGTTT
ATGACAGCTGCGGCGGAATTGGGACGAGGCCGTAG

protein sequence of Gcaud2712.t1

>Gcaud2712.t1 ID=Gcaud2712.t1|Name=Gcaud2712.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=545bp
MFFPNAKLKLTALSDLDSLLGHRHHPAHLAYGTAGFRGLATSLYEAVLRC
GVLAACRSHVLDGKAVGVMVTASHNPPADNGLKLVEPDGSMLDPEWEQLA
TEFVNASRNPARTLQNFVSVGEVSIAGKATVVVGRDSRDSSLTLVDLVVQ
GVEAVGGRVVHVGLVTTPQLHFSVRARHRGDPCNILHYYENMKKAYAELT
GSKHFSASVAVDCANGVGATAVKGVKGLLPNLFAVNKPGDGPLNHECGAD
FVQKRRRPPVLYNDKECRADIWASLDGDADRLVMYRNSESGFVLADGDRF
AALVATFVSKHIAATGISTMTIGVAQTAYSNGAATQYLEALSGVDIVIAK
TGVKHLEKAVRAYDIGIYWEPNGHGTVLFSEKAISELRKCANTSGDDTQC
GEKIDSVSTLLAVSRLANQAVGDGVADLLLICGILCKEDMTLDSWLQLYD
ERCSSNMIVRVQDKNVIVTEDCDRSVKEPDALRTSIKTITSGNGCRGFVR
PSGTEDVVRIYAEAPVGGEELAKEMALRISQMVYDSCGGIGTRP*

mRNA from alignment at NODE_12_length_86746_cov_4.301944:72367..74001-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2712.t1 ID=Gcaud2712.t1|Name=Gcaud2712.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1635bp|location=Sequence derived from alignment at NODE_12_length_86746_cov_4.301944:72367..74001- (Gracilaria caudata M_176_S67 male)
ATGTTCTTCCCAAACGCAAAGCTCAAGCTCACAGCGTTGTCAGACCTTGA
CAGCCTTCTCGGTCACCGCCATCATCCAGCCCACCTCGCTTATGGCACCG
CCGGATTTCGTGGTCTAGCCACCAGTCTATACGAGGCCGTGCTCCGATGC
GGCGTTCTAGCAGCGTGCAGATCTCACGTACTCGACGGAAAAGCGGTCGG
TGTGATGGTCACTGCTTCTCACAACCCACCCGCTGATAATGGTCTCAAGC
TTGTTGAGCCAGACGGCTCTATGCTGGATCCCGAGTGGGAGCAACTGGCC
ACCGAATTTGTCAATGCCTCGCGTAATCCAGCCCGTACACTACAGAATTT
TGTATCCGTTGGCGAGGTTTCCATTGCGGGAAAGGCCACAGTGGTGGTCG
GCCGTGATTCTCGCGATAGCTCTTTAACTCTCGTTGACCTCGTCGTTCAA
GGTGTGGAGGCAGTTGGTGGTCGTGTAGTGCACGTAGGACTTGTGACAAC
CCCTCAGTTACACTTCTCGGTGCGTGCTCGGCACCGCGGTGATCCGTGTA
ACATTCTCCATTACTATGAGAATATGAAGAAAGCTTACGCTGAACTAACC
GGAAGCAAGCATTTCTCTGCTTCAGTTGCAGTAGACTGTGCAAACGGTGT
AGGGGCAACTGCTGTGAAAGGTGTTAAAGGCCTTTTACCAAACCTTTTTG
CTGTGAACAAACCAGGAGACGGACCTCTAAACCACGAGTGCGGAGCCGAT
TTTGTTCAAAAGAGACGCCGTCCGCCAGTTCTATATAACGACAAGGAATG
CAGAGCTGACATTTGGGCGTCTCTTGATGGTGATGCAGACCGTCTCGTCA
TGTATCGGAACAGCGAAAGCGGCTTTGTTCTCGCAGACGGTGATCGTTTT
GCAGCGCTCGTTGCAACATTCGTCTCCAAACACATTGCGGCAACTGGCAT
TTCAACAATGACTATTGGTGTTGCTCAAACAGCATACTCGAACGGGGCGG
CGACGCAATATCTCGAGGCCCTTTCGGGAGTAGATATTGTAATCGCAAAA
ACAGGTGTCAAACATTTGGAAAAGGCGGTCCGAGCGTACGATATCGGCAT
CTATTGGGAGCCAAATGGCCACGGAACGGTGCTTTTCAGTGAGAAGGCAA
TAAGCGAGCTAAGAAAGTGCGCGAACACGTCAGGAGACGACACTCAATGC
GGCGAAAAGATTGATAGCGTATCGACGCTTCTTGCCGTTAGCCGACTTGC
CAACCAGGCAGTAGGTGACGGTGTGGCTGACTTGTTGCTGATATGCGGTA
TTCTTTGCAAGGAAGACATGACTTTGGATTCCTGGTTGCAACTGTATGAT
GAGCGATGTAGTAGCAATATGATCGTTCGTGTACAGGACAAGAATGTGAT
TGTTACTGAGGATTGTGATCGATCTGTGAAAGAACCAGATGCTCTGCGGA
CATCCATCAAAACAATTACGTCTGGAAATGGTTGCAGGGGTTTTGTTAGA
CCAAGCGGAACGGAAGATGTTGTTCGGATATATGCTGAGGCGCCAGTTGG
TGGAGAGGAATTGGCGAAGGAGATGGCATTACGAATCAGTCAAATGGTTT
ATGACAGCTGCGGCGGAATTGGGACGAGGCCGTAG

Coding sequence (CDS) from alignment at NODE_12_length_86746_cov_4.301944:72367..74001-

>Gcaud2712.t1 ID=Gcaud2712.t1|Name=Gcaud2712.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1635bp|location=Sequence derived from alignment at NODE_12_length_86746_cov_4.301944:72367..74001- (Gracilaria caudata M_176_S67 male)
ATGTTCTTCCCAAACGCAAAGCTCAAGCTCACAGCGTTGTCAGACCTTGA
CAGCCTTCTCGGTCACCGCCATCATCCAGCCCACCTCGCTTATGGCACCG
CCGGATTTCGTGGTCTAGCCACCAGTCTATACGAGGCCGTGCTCCGATGC
GGCGTTCTAGCAGCGTGCAGATCTCACGTACTCGACGGAAAAGCGGTCGG
TGTGATGGTCACTGCTTCTCACAACCCACCCGCTGATAATGGTCTCAAGC
TTGTTGAGCCAGACGGCTCTATGCTGGATCCCGAGTGGGAGCAACTGGCC
ACCGAATTTGTCAATGCCTCGCGTAATCCAGCCCGTACACTACAGAATTT
TGTATCCGTTGGCGAGGTTTCCATTGCGGGAAAGGCCACAGTGGTGGTCG
GCCGTGATTCTCGCGATAGCTCTTTAACTCTCGTTGACCTCGTCGTTCAA
GGTGTGGAGGCAGTTGGTGGTCGTGTAGTGCACGTAGGACTTGTGACAAC
CCCTCAGTTACACTTCTCGGTGCGTGCTCGGCACCGCGGTGATCCGTGTA
ACATTCTCCATTACTATGAGAATATGAAGAAAGCTTACGCTGAACTAACC
GGAAGCAAGCATTTCTCTGCTTCAGTTGCAGTAGACTGTGCAAACGGTGT
AGGGGCAACTGCTGTGAAAGGTGTTAAAGGCCTTTTACCAAACCTTTTTG
CTGTGAACAAACCAGGAGACGGACCTCTAAACCACGAGTGCGGAGCCGAT
TTTGTTCAAAAGAGACGCCGTCCGCCAGTTCTATATAACGACAAGGAATG
CAGAGCTGACATTTGGGCGTCTCTTGATGGTGATGCAGACCGTCTCGTCA
TGTATCGGAACAGCGAAAGCGGCTTTGTTCTCGCAGACGGTGATCGTTTT
GCAGCGCTCGTTGCAACATTCGTCTCCAAACACATTGCGGCAACTGGCAT
TTCAACAATGACTATTGGTGTTGCTCAAACAGCATACTCGAACGGGGCGG
CGACGCAATATCTCGAGGCCCTTTCGGGAGTAGATATTGTAATCGCAAAA
ACAGGTGTCAAACATTTGGAAAAGGCGGTCCGAGCGTACGATATCGGCAT
CTATTGGGAGCCAAATGGCCACGGAACGGTGCTTTTCAGTGAGAAGGCAA
TAAGCGAGCTAAGAAAGTGCGCGAACACGTCAGGAGACGACACTCAATGC
GGCGAAAAGATTGATAGCGTATCGACGCTTCTTGCCGTTAGCCGACTTGC
CAACCAGGCAGTAGGTGACGGTGTGGCTGACTTGTTGCTGATATGCGGTA
TTCTTTGCAAGGAAGACATGACTTTGGATTCCTGGTTGCAACTGTATGAT
GAGCGATGTAGTAGCAATATGATCGTTCGTGTACAGGACAAGAATGTGAT
TGTTACTGAGGATTGTGATCGATCTGTGAAAGAACCAGATGCTCTGCGGA
CATCCATCAAAACAATTACGTCTGGAAATGGTTGCAGGGGTTTTGTTAGA
CCAAGCGGAACGGAAGATGTTGTTCGGATATATGCTGAGGCGCCAGTTGG
TGGAGAGGAATTGGCGAAGGAGATGGCATTACGAATCAGTCAAATGGTTT
ATGACAGCTGCGGCGGAATTGGGACGAGGCCGTAG