Gcaud2711.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2711.t1
Unique Name	Gcaud2711.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	294

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_12_length_86746_cov_4.301944	contig	NODE_12_length_86746_cov_4.301944:71435..72316 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D8LCZ8
Preferred name	PANB
PFAMs	Pantoate_transf
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00022,RC00200
KEGG ko	ko:K00606
KEGG Reaction	R01226
KEGG Pathway	ko00770,ko01100,ko01110,map00770,map01100,map01110
KEGG Module	M00119
Evalue	1.33e-94
EggNOG OGs	COG0413@1\|root,KOG2949@2759\|Eukaryota
EC	2.1.2.11
Description	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
COG category	H
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2711	Gcaud2711	Gracilaria caudata M_176_S67 male	gene	NODE_12_length_86746_cov_4.301944 71435..72316 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2711.t1.start1	Gcaud2711.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_12_length_86746_cov_4.301944 71435..71437 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2711.t1.CDS1	Gcaud2711.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_12_length_86746_cov_4.301944 71435..72316 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2711.t1.exon1	Gcaud2711.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_12_length_86746_cov_4.301944 71435..72316 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2711.t1.stop1	Gcaud2711.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_12_length_86746_cov_4.301944 72314..72316 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2711.t1	Gcaud2711.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_12_length_86746_cov_4.301944 71435..72316 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_12_length_86746_cov_4.301944:71435..72316+
coding sequence from alignment at NODE_12_length_86746_cov_4.301944:71435..72316+

mRNA sequence

>Gcaud2711.t1 ID=Gcaud2711.t1|Name=Gcaud2711.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=294bp
MLTAYDYPTALHAERAGVDVVLVGDSLGMVVLGHRTTQSVTLDHMIHHSS
AARRAVNRALLVADLPFGSYEVSPELAIESAIRLVKATAVDAVKLEGGVN
RAAAIKRIVDAGIAVMGHVGLLPQSVSREGAFRAKGRTAQTAFNTIKDAQ
AVEQAGAFAVVLECVPERVTALVSDAVNIPVIGIGSGVECDGQVLVYHDM
LGVLSHPHHAHAAPKFSKAFVDVGTLIDKAIRDYCMHVKDRTFPTATHSP
YTIPDEEYKRLKRLLVSEKFPRRSLSPSKSNLNSVEDEPTPLY*

spliced messenger RNA

>Gcaud2711.t1 ID=Gcaud2711.t1|Name=Gcaud2711.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=882bp|location=Sequence derived from alignment at NODE_12_length_86746_cov_4.301944:71435..72316+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTAACAGCCTACGACTATCCGACAGCCCTACACGCCGAGCGCGCCGG
AGTAGACGTCGTACTGGTCGGCGACTCTCTCGGAATGGTGGTTCTCGGCC
ATCGCACGACCCAATCCGTCACCCTTGATCACATGATTCATCACTCATCC
GCCGCCCGTCGAGCGGTCAATCGAGCGCTTCTCGTCGCCGACCTGCCCTT
CGGAAGCTATGAAGTCTCTCCTGAACTCGCAATTGAAAGCGCTATTCGCC
TTGTCAAGGCTACTGCCGTAGACGCCGTAAAGCTGGAAGGCGGTGTCAAC
CGTGCTGCTGCTATAAAAAGAATCGTCGATGCAGGCATTGCTGTCATGGG
GCACGTAGGCCTGCTACCGCAATCAGTCAGTCGAGAAGGGGCGTTCCGAG
CAAAAGGCCGCACAGCACAAACTGCTTTCAACACCATTAAAGACGCACAA
GCAGTTGAACAAGCGGGCGCGTTCGCAGTCGTTCTTGAGTGCGTTCCAGA
ACGCGTCACTGCCCTCGTGTCAGATGCAGTCAATATACCGGTCATAGGCA
TTGGTAGCGGAGTCGAATGCGACGGTCAGGTTCTGGTGTATCATGACATG
CTTGGTGTTCTTTCTCATCCGCACCACGCACACGCCGCCCCAAAGTTCTC
CAAGGCCTTTGTAGACGTTGGAACTCTTATCGATAAAGCGATTCGTGATT
ACTGTATGCATGTCAAGGATCGCACATTCCCAACAGCAACTCATTCCCCC
TATACTATTCCCGATGAGGAGTACAAAAGACTGAAACGCCTCCTTGTATC
AGAGAAATTTCCACGTCGTTCGCTGTCGCCCAGCAAATCCAATTTAAACA
GCGTTGAAGATGAACCAACACCGCTATACTAA

protein sequence of Gcaud2711.t1

>Gcaud2711.t1 ID=Gcaud2711.t1|Name=Gcaud2711.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=294bp
MLTAYDYPTALHAERAGVDVVLVGDSLGMVVLGHRTTQSVTLDHMIHHSS
AARRAVNRALLVADLPFGSYEVSPELAIESAIRLVKATAVDAVKLEGGVN
RAAAIKRIVDAGIAVMGHVGLLPQSVSREGAFRAKGRTAQTAFNTIKDAQ
AVEQAGAFAVVLECVPERVTALVSDAVNIPVIGIGSGVECDGQVLVYHDM
LGVLSHPHHAHAAPKFSKAFVDVGTLIDKAIRDYCMHVKDRTFPTATHSP
YTIPDEEYKRLKRLLVSEKFPRRSLSPSKSNLNSVEDEPTPLY*

mRNA from alignment at NODE_12_length_86746_cov_4.301944:71435..72316+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2711.t1 ID=Gcaud2711.t1|Name=Gcaud2711.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=882bp|location=Sequence derived from alignment at NODE_12_length_86746_cov_4.301944:71435..72316+ (Gracilaria caudata M_176_S67 male)
ATGCTAACAGCCTACGACTATCCGACAGCCCTACACGCCGAGCGCGCCGG
AGTAGACGTCGTACTGGTCGGCGACTCTCTCGGAATGGTGGTTCTCGGCC
ATCGCACGACCCAATCCGTCACCCTTGATCACATGATTCATCACTCATCC
GCCGCCCGTCGAGCGGTCAATCGAGCGCTTCTCGTCGCCGACCTGCCCTT
CGGAAGCTATGAAGTCTCTCCTGAACTCGCAATTGAAAGCGCTATTCGCC
TTGTCAAGGCTACTGCCGTAGACGCCGTAAAGCTGGAAGGCGGTGTCAAC
CGTGCTGCTGCTATAAAAAGAATCGTCGATGCAGGCATTGCTGTCATGGG
GCACGTAGGCCTGCTACCGCAATCAGTCAGTCGAGAAGGGGCGTTCCGAG
CAAAAGGCCGCACAGCACAAACTGCTTTCAACACCATTAAAGACGCACAA
GCAGTTGAACAAGCGGGCGCGTTCGCAGTCGTTCTTGAGTGCGTTCCAGA
ACGCGTCACTGCCCTCGTGTCAGATGCAGTCAATATACCGGTCATAGGCA
TTGGTAGCGGAGTCGAATGCGACGGTCAGGTTCTGGTGTATCATGACATG
CTTGGTGTTCTTTCTCATCCGCACCACGCACACGCCGCCCCAAAGTTCTC
CAAGGCCTTTGTAGACGTTGGAACTCTTATCGATAAAGCGATTCGTGATT
ACTGTATGCATGTCAAGGATCGCACATTCCCAACAGCAACTCATTCCCCC
TATACTATTCCCGATGAGGAGTACAAAAGACTGAAACGCCTCCTTGTATC
AGAGAAATTTCCACGTCGTTCGCTGTCGCCCAGCAAATCCAATTTAAACA
GCGTTGAAGATGAACCAACACCGCTATACTAA

Coding sequence (CDS) from alignment at NODE_12_length_86746_cov_4.301944:71435..72316+

>Gcaud2711.t1 ID=Gcaud2711.t1|Name=Gcaud2711.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=882bp|location=Sequence derived from alignment at NODE_12_length_86746_cov_4.301944:71435..72316+ (Gracilaria caudata M_176_S67 male)
ATGCTAACAGCCTACGACTATCCGACAGCCCTACACGCCGAGCGCGCCGG
AGTAGACGTCGTACTGGTCGGCGACTCTCTCGGAATGGTGGTTCTCGGCC
ATCGCACGACCCAATCCGTCACCCTTGATCACATGATTCATCACTCATCC
GCCGCCCGTCGAGCGGTCAATCGAGCGCTTCTCGTCGCCGACCTGCCCTT
CGGAAGCTATGAAGTCTCTCCTGAACTCGCAATTGAAAGCGCTATTCGCC
TTGTCAAGGCTACTGCCGTAGACGCCGTAAAGCTGGAAGGCGGTGTCAAC
CGTGCTGCTGCTATAAAAAGAATCGTCGATGCAGGCATTGCTGTCATGGG
GCACGTAGGCCTGCTACCGCAATCAGTCAGTCGAGAAGGGGCGTTCCGAG
CAAAAGGCCGCACAGCACAAACTGCTTTCAACACCATTAAAGACGCACAA
GCAGTTGAACAAGCGGGCGCGTTCGCAGTCGTTCTTGAGTGCGTTCCAGA
ACGCGTCACTGCCCTCGTGTCAGATGCAGTCAATATACCGGTCATAGGCA
TTGGTAGCGGAGTCGAATGCGACGGTCAGGTTCTGGTGTATCATGACATG
CTTGGTGTTCTTTCTCATCCGCACCACGCACACGCCGCCCCAAAGTTCTC
CAAGGCCTTTGTAGACGTTGGAACTCTTATCGATAAAGCGATTCGTGATT
ACTGTATGCATGTCAAGGATCGCACATTCCCAACAGCAACTCATTCCCCC
TATACTATTCCCGATGAGGAGTACAAAAGACTGAAACGCCTCCTTGTATC
AGAGAAATTTCCACGTCGTTCGCTGTCGCCCAGCAAATCCAATTTAAACA
GCGTTGAAGATGAACCAACACCGCTATACTAA