Gcaud2708.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2708.t1
Unique Name	Gcaud2708.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	324

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_12_length_86746_cov_4.301944	contig	NODE_12_length_86746_cov_4.301944:64942..65913 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7739.XP_002594491.1
Preferred name	TAMM41
PFAMs	Mmp37
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K17807,ko:K21121
GOs	GO:0003674,GO:0003824,GO:0004605,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016020,GO:0016740,GO:0016772,GO:0016779,GO:0019637,GO:0019866,GO:0019898,GO:0031090,GO:0031312,GO:0031314,GO:0031966,GO:0031967,GO:0031975,GO:0032048,GO:0032049,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045017,GO:0046471,GO:0046474,GO:0046486,GO:0070567,GO:0071704,GO:0090407,GO:1901576
Evalue	8.1e-50
EggNOG OGs	KOG2986@1\|root,KOG2986@2759\|Eukaryota,38TTK@33154\|Opisthokonta,3BJ59@33208\|Metazoa,3CSB3@33213\|Bilateria,481ZV@7711\|Chordata
EC	2.3.1.259
Description	phosphatidate cytidylyltransferase activity
COG category	S
BRITE	ko00000,ko01000,ko03029,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2708	Gcaud2708	Gracilaria caudata M_176_S67 male	gene	NODE_12_length_86746_cov_4.301944 64942..65913 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2708.t1.stop1	Gcaud2708.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_12_length_86746_cov_4.301944 64942..64944 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2708.t1.CDS1	Gcaud2708.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_12_length_86746_cov_4.301944 64942..65913 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2708.t1.exon1	Gcaud2708.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_12_length_86746_cov_4.301944 64942..65913 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2708.t1.start1	Gcaud2708.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_12_length_86746_cov_4.301944 65911..65913 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2708.t1	Gcaud2708.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_12_length_86746_cov_4.301944 64942..65913 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_12_length_86746_cov_4.301944:64942..65913-
coding sequence from alignment at NODE_12_length_86746_cov_4.301944:64942..65913-

mRNA sequence

>Gcaud2708.t1 ID=Gcaud2708.t1|Name=Gcaud2708.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=324bp
MVHVADPCAVPLDQAQHIVASLPPAAFAFAYGSAVVPQCNADPRARMIDL
MLAVDDPQQWHAQNLYRNLRHYSIPAQVAGASFVTGLQRAGAAVYFNTML
RARGTSFKYGVVSTADLITDLMQWQSFYVSGRLQKPVRVLTSAGPLLTHA
LRQNTEAAAAAALLTLPESFDEQRFYTAVASLSYTRDVRMSMAVEARTKV
RDIVQANMQAFRSMYATSDTVSDVVTRGELWRRDIGADAQQRLLSRLPLT
IRKALHKTVGVESDELPYMHTSRVANAMLAVIGSVVARSSLTQAGKGVLS
AGLTTSVRYVAAKIGKSIRSAMR*

spliced messenger RNA

>Gcaud2708.t1 ID=Gcaud2708.t1|Name=Gcaud2708.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=972bp|location=Sequence derived from alignment at NODE_12_length_86746_cov_4.301944:64942..65913- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCACGTCGCCGACCCGTGCGCGGTGCCGCTCGATCAGGCGCAGCA
CATTGTGGCCTCGCTGCCGCCGGCCGCCTTCGCCTTCGCCTACGGCTCCG
CCGTCGTCCCGCAGTGCAACGCCGACCCGCGCGCGCGCATGATCGACTTG
ATGCTGGCCGTGGATGACCCGCAGCAATGGCACGCGCAGAACCTGTACCG
CAACCTTCGCCACTACTCCATTCCGGCGCAGGTGGCCGGCGCTTCCTTCG
TCACCGGACTGCAGCGCGCCGGCGCGGCAGTGTACTTCAACACCATGCTG
CGCGCACGCGGCACCAGCTTCAAGTACGGCGTCGTTTCCACCGCAGACCT
CATCACTGACCTCATGCAGTGGCAATCGTTCTACGTTTCGGGCCGACTGC
AGAAGCCTGTTCGCGTGCTCACTAGCGCGGGTCCTCTGCTCACACACGCC
TTGCGCCAAAACACTGAGGCAGCCGCCGCTGCCGCTTTACTCACGCTGCC
AGAGAGCTTTGATGAACAGCGCTTCTACACCGCCGTAGCATCTCTATCCT
ACACAAGAGACGTGCGAATGTCCATGGCCGTGGAGGCCAGAACCAAGGTC
CGCGACATTGTGCAAGCCAATATGCAAGCGTTTCGTTCCATGTATGCTAC
TAGTGATACAGTGTCGGACGTTGTCACGCGCGGTGAGCTTTGGAGACGAG
ACATTGGTGCCGACGCGCAGCAGCGATTGCTCAGCAGACTGCCTCTCACA
ATCAGGAAGGCGTTGCACAAGACCGTCGGTGTTGAGAGCGATGAGTTGCC
ATATATGCATACTAGTCGCGTGGCTAACGCTATGCTGGCCGTGATCGGGT
CGGTGGTGGCGAGAAGCAGTCTCACCCAAGCTGGAAAAGGCGTGCTCTCT
GCTGGTTTGACAACCAGCGTCAGATATGTGGCTGCTAAGATTGGCAAGTC
AATACGCAGTGCGATGCGATAA

protein sequence of Gcaud2708.t1

>Gcaud2708.t1 ID=Gcaud2708.t1|Name=Gcaud2708.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=324bp
MVHVADPCAVPLDQAQHIVASLPPAAFAFAYGSAVVPQCNADPRARMIDL
MLAVDDPQQWHAQNLYRNLRHYSIPAQVAGASFVTGLQRAGAAVYFNTML
RARGTSFKYGVVSTADLITDLMQWQSFYVSGRLQKPVRVLTSAGPLLTHA
LRQNTEAAAAAALLTLPESFDEQRFYTAVASLSYTRDVRMSMAVEARTKV
RDIVQANMQAFRSMYATSDTVSDVVTRGELWRRDIGADAQQRLLSRLPLT
IRKALHKTVGVESDELPYMHTSRVANAMLAVIGSVVARSSLTQAGKGVLS
AGLTTSVRYVAAKIGKSIRSAMR*

mRNA from alignment at NODE_12_length_86746_cov_4.301944:64942..65913-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2708.t1 ID=Gcaud2708.t1|Name=Gcaud2708.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=972bp|location=Sequence derived from alignment at NODE_12_length_86746_cov_4.301944:64942..65913- (Gracilaria caudata M_176_S67 male)
ATGGTGCACGTCGCCGACCCGTGCGCGGTGCCGCTCGATCAGGCGCAGCA
CATTGTGGCCTCGCTGCCGCCGGCCGCCTTCGCCTTCGCCTACGGCTCCG
CCGTCGTCCCGCAGTGCAACGCCGACCCGCGCGCGCGCATGATCGACTTG
ATGCTGGCCGTGGATGACCCGCAGCAATGGCACGCGCAGAACCTGTACCG
CAACCTTCGCCACTACTCCATTCCGGCGCAGGTGGCCGGCGCTTCCTTCG
TCACCGGACTGCAGCGCGCCGGCGCGGCAGTGTACTTCAACACCATGCTG
CGCGCACGCGGCACCAGCTTCAAGTACGGCGTCGTTTCCACCGCAGACCT
CATCACTGACCTCATGCAGTGGCAATCGTTCTACGTTTCGGGCCGACTGC
AGAAGCCTGTTCGCGTGCTCACTAGCGCGGGTCCTCTGCTCACACACGCC
TTGCGCCAAAACACTGAGGCAGCCGCCGCTGCCGCTTTACTCACGCTGCC
AGAGAGCTTTGATGAACAGCGCTTCTACACCGCCGTAGCATCTCTATCCT
ACACAAGAGACGTGCGAATGTCCATGGCCGTGGAGGCCAGAACCAAGGTC
CGCGACATTGTGCAAGCCAATATGCAAGCGTTTCGTTCCATGTATGCTAC
TAGTGATACAGTGTCGGACGTTGTCACGCGCGGTGAGCTTTGGAGACGAG
ACATTGGTGCCGACGCGCAGCAGCGATTGCTCAGCAGACTGCCTCTCACA
ATCAGGAAGGCGTTGCACAAGACCGTCGGTGTTGAGAGCGATGAGTTGCC
ATATATGCATACTAGTCGCGTGGCTAACGCTATGCTGGCCGTGATCGGGT
CGGTGGTGGCGAGAAGCAGTCTCACCCAAGCTGGAAAAGGCGTGCTCTCT
GCTGGTTTGACAACCAGCGTCAGATATGTGGCTGCTAAGATTGGCAAGTC
AATACGCAGTGCGATGCGATAA

Coding sequence (CDS) from alignment at NODE_12_length_86746_cov_4.301944:64942..65913-

>Gcaud2708.t1 ID=Gcaud2708.t1|Name=Gcaud2708.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=972bp|location=Sequence derived from alignment at NODE_12_length_86746_cov_4.301944:64942..65913- (Gracilaria caudata M_176_S67 male)
ATGGTGCACGTCGCCGACCCGTGCGCGGTGCCGCTCGATCAGGCGCAGCA
CATTGTGGCCTCGCTGCCGCCGGCCGCCTTCGCCTTCGCCTACGGCTCCG
CCGTCGTCCCGCAGTGCAACGCCGACCCGCGCGCGCGCATGATCGACTTG
ATGCTGGCCGTGGATGACCCGCAGCAATGGCACGCGCAGAACCTGTACCG
CAACCTTCGCCACTACTCCATTCCGGCGCAGGTGGCCGGCGCTTCCTTCG
TCACCGGACTGCAGCGCGCCGGCGCGGCAGTGTACTTCAACACCATGCTG
CGCGCACGCGGCACCAGCTTCAAGTACGGCGTCGTTTCCACCGCAGACCT
CATCACTGACCTCATGCAGTGGCAATCGTTCTACGTTTCGGGCCGACTGC
AGAAGCCTGTTCGCGTGCTCACTAGCGCGGGTCCTCTGCTCACACACGCC
TTGCGCCAAAACACTGAGGCAGCCGCCGCTGCCGCTTTACTCACGCTGCC
AGAGAGCTTTGATGAACAGCGCTTCTACACCGCCGTAGCATCTCTATCCT
ACACAAGAGACGTGCGAATGTCCATGGCCGTGGAGGCCAGAACCAAGGTC
CGCGACATTGTGCAAGCCAATATGCAAGCGTTTCGTTCCATGTATGCTAC
TAGTGATACAGTGTCGGACGTTGTCACGCGCGGTGAGCTTTGGAGACGAG
ACATTGGTGCCGACGCGCAGCAGCGATTGCTCAGCAGACTGCCTCTCACA
ATCAGGAAGGCGTTGCACAAGACCGTCGGTGTTGAGAGCGATGAGTTGCC
ATATATGCATACTAGTCGCGTGGCTAACGCTATGCTGGCCGTGATCGGGT
CGGTGGTGGCGAGAAGCAGTCTCACCCAAGCTGGAAAAGGCGTGCTCTCT
GCTGGTTTGACAACCAGCGTCAGATATGTGGCTGCTAAGATTGGCAAGTC
AATACGCAGTGCGATGCGATAA