Gcaud2707.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2707.t1
Unique NameGcaud2707.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length235
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_12_length_86746_cov_4.301944contigNODE_12_length_86746_cov_4.301944:64147..64907 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3055.EDO98910
PFAMsRLL
Max annot lvl3041|Chlorophyta
KEGG koko:K15433
Evalue2.16e-23
EggNOG OGsKOG4380@1|root,KOG4380@2759|Eukaryota,37X3C@33090|Viridiplantae,34IIY@3041|Chlorophyta
DescriptionPutative carnitine deficiency-associated protein
COG categoryS
BRITEko00000,ko03016,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2707Gcaud2707Gracilaria caudata M_176_S67 malegeneNODE_12_length_86746_cov_4.301944 64147..64907 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2707.t1Gcaud2707.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_12_length_86746_cov_4.301944 64147..64907 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2707.t1.start1Gcaud2707.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_12_length_86746_cov_4.301944 64147..64149 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2707.t1.CDS1Gcaud2707.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_12_length_86746_cov_4.301944 64147..64219 +
Gcaud2707.t1.CDS2Gcaud2707.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_12_length_86746_cov_4.301944 64276..64907 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2707.t1.exon1Gcaud2707.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_12_length_86746_cov_4.301944 64147..64219 +
Gcaud2707.t1.exon2Gcaud2707.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_12_length_86746_cov_4.301944 64276..64907 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2707.t1.intron1Gcaud2707.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_12_length_86746_cov_4.301944 64220..64275 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2707.t1.stop1Gcaud2707.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_12_length_86746_cov_4.301944 64905..64907 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2707.t1 ID=Gcaud2707.t1|Name=Gcaud2707.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=235bp
MNCSEPAIELRLKALQCPVPPNPADALLVQKQICWLEDVYIRRYAIADRK
ALRKTDYRSALNAYLRLLDAPVTAYASPIDARNFLLDVAINLHYDDNAAL
FNTPVDPWQSRRLPVVPGISTSPIVSTAIDSLREALQLPDAEGVDSADVA
AAAADAVEVLTRDPLTFDTEQNIDDLPIALETEDKQVRRATCVLRLLYVR
RLRALQDEINDIISEMQSITAEPSTDAKLGKVGR*
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spliced messenger RNA

>Gcaud2707.t1 ID=Gcaud2707.t1|Name=Gcaud2707.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=705bp|location=Sequence derived from alignment at NODE_12_length_86746_cov_4.301944:64147..64907+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTGCTCCGAGCCAGCCATCGAACTGCGCCTGAAAGCGCTCCAATG
CCCCGTACCACCCAATCCAGCCGACGCGCTCCTTGTTCAGAAGCAAATCT
GCTGGCTAGAAGACGTTTACATTCGTCGTTACGCCATCGCCGACCGTAAG
GCGCTTCGCAAAACAGATTACCGCTCAGCTTTAAACGCGTACCTACGACT
CCTCGACGCGCCTGTCACAGCATACGCCTCTCCCATCGACGCCAGAAACT
TCTTGTTGGATGTGGCCATCAACCTTCATTACGACGATAATGCCGCTCTG
TTCAACACACCGGTGGATCCGTGGCAGTCTCGAAGGCTTCCCGTGGTGCC
AGGCATATCAACCTCGCCCATTGTATCCACTGCGATAGACTCTTTGAGAG
AAGCACTGCAGTTACCTGACGCTGAAGGCGTGGACAGTGCGGACGTGGCT
GCGGCTGCCGCAGACGCGGTGGAAGTTCTCACGAGGGATCCGCTGACGTT
TGACACAGAACAGAACATCGACGACCTGCCCATCGCACTCGAAACGGAGG
ATAAGCAAGTTCGACGCGCCACATGCGTGTTGCGCCTTCTGTATGTGCGT
CGACTGCGCGCTCTGCAAGATGAGATAAACGATATCATCTCCGAAATGCA
ATCCATTACAGCCGAACCAAGTACCGACGCAAAGCTCGGGAAGGTGGGAC
GTTGA
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protein sequence of Gcaud2707.t1

>Gcaud2707.t1 ID=Gcaud2707.t1|Name=Gcaud2707.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=235bp
MNCSEPAIELRLKALQCPVPPNPADALLVQKQICWLEDVYIRRYAIADRK
ALRKTDYRSALNAYLRLLDAPVTAYASPIDARNFLLDVAINLHYDDNAAL
FNTPVDPWQSRRLPVVPGISTSPIVSTAIDSLREALQLPDAEGVDSADVA
AAAADAVEVLTRDPLTFDTEQNIDDLPIALETEDKQVRRATCVLRLLYVR
RLRALQDEINDIISEMQSITAEPSTDAKLGKVGR*
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mRNA from alignment at NODE_12_length_86746_cov_4.301944:64147..64907+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2707.t1 ID=Gcaud2707.t1|Name=Gcaud2707.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=761bp|location=Sequence derived from alignment at NODE_12_length_86746_cov_4.301944:64147..64907+ (Gracilaria caudata M_176_S67 male)
ATGAATTGCTCCGAGCCAGCCATCGAACTGCGCCTGAAAGCGCTCCAATG
CCCCGTACCACCCAATCCAGCCGGTGAGTTCACCACAACCCCGCCAATGC
ATTCAATTCAGCGCTAACTGCCCCATCAGACGCGCTCCTTGTTCAGAAGC
AAATCTGCTGGCTAGAAGACGTTTACATTCGTCGTTACGCCATCGCCGAC
CGTAAGGCGCTTCGCAAAACAGATTACCGCTCAGCTTTAAACGCGTACCT
ACGACTCCTCGACGCGCCTGTCACAGCATACGCCTCTCCCATCGACGCCA
GAAACTTCTTGTTGGATGTGGCCATCAACCTTCATTACGACGATAATGCC
GCTCTGTTCAACACACCGGTGGATCCGTGGCAGTCTCGAAGGCTTCCCGT
GGTGCCAGGCATATCAACCTCGCCCATTGTATCCACTGCGATAGACTCTT
TGAGAGAAGCACTGCAGTTACCTGACGCTGAAGGCGTGGACAGTGCGGAC
GTGGCTGCGGCTGCCGCAGACGCGGTGGAAGTTCTCACGAGGGATCCGCT
GACGTTTGACACAGAACAGAACATCGACGACCTGCCCATCGCACTCGAAA
CGGAGGATAAGCAAGTTCGACGCGCCACATGCGTGTTGCGCCTTCTGTAT
GTGCGTCGACTGCGCGCTCTGCAAGATGAGATAAACGATATCATCTCCGA
AATGCAATCCATTACAGCCGAACCAAGTACCGACGCAAAGCTCGGGAAGG
TGGGACGTTGA
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Coding sequence (CDS) from alignment at NODE_12_length_86746_cov_4.301944:64147..64907+

>Gcaud2707.t1 ID=Gcaud2707.t1|Name=Gcaud2707.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=705bp|location=Sequence derived from alignment at NODE_12_length_86746_cov_4.301944:64147..64907+ (Gracilaria caudata M_176_S67 male)
ATGAATTGCTCCGAGCCAGCCATCGAACTGCGCCTGAAAGCGCTCCAATG
CCCCGTACCACCCAATCCAGCCGACGCGCTCCTTGTTCAGAAGCAAATCT
GCTGGCTAGAAGACGTTTACATTCGTCGTTACGCCATCGCCGACCGTAAG
GCGCTTCGCAAAACAGATTACCGCTCAGCTTTAAACGCGTACCTACGACT
CCTCGACGCGCCTGTCACAGCATACGCCTCTCCCATCGACGCCAGAAACT
TCTTGTTGGATGTGGCCATCAACCTTCATTACGACGATAATGCCGCTCTG
TTCAACACACCGGTGGATCCGTGGCAGTCTCGAAGGCTTCCCGTGGTGCC
AGGCATATCAACCTCGCCCATTGTATCCACTGCGATAGACTCTTTGAGAG
AAGCACTGCAGTTACCTGACGCTGAAGGCGTGGACAGTGCGGACGTGGCT
GCGGCTGCCGCAGACGCGGTGGAAGTTCTCACGAGGGATCCGCTGACGTT
TGACACAGAACAGAACATCGACGACCTGCCCATCGCACTCGAAACGGAGG
ATAAGCAAGTTCGACGCGCCACATGCGTGTTGCGCCTTCTGTATGTGCGT
CGACTGCGCGCTCTGCAAGATGAGATAAACGATATCATCTCCGAAATGCA
ATCCATTACAGCCGAACCAAGTACCGACGCAAAGCTCGGGAAGGTGGGAC
GTTGA
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