Gcaud2706.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2706.t1
Unique Name	Gcaud2706.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	159

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_12_length_86746_cov_4.301944	contig	NODE_12_length_86746_cov_4.301944:63330..63886 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706177.1
PFAMs	Thioredoxin
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03671
KEGG Pathway	ko04621,ko05418,map04621,map05418
GOs	GO:0003674,GO:0003824,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006979,GO:0008047,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0019725,GO:0030234,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044093,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045454,GO:0047134,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0097237,GO:0098754,GO:0098772,GO:0098869,GO:1990748
Evalue	1.21e-33
EggNOG OGs	COG0526@1\|root,KOG0910@2759\|Eukaryota
Description	glycerol ether metabolic process
COG category	O
BRITE	ko00000,ko00001,ko03110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2706	Gcaud2706	Gracilaria caudata M_176_S67 male	gene	NODE_12_length_86746_cov_4.301944 63330..63886 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2706.t1	Gcaud2706.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_12_length_86746_cov_4.301944 63330..63886 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2706.t1.stop1	Gcaud2706.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_12_length_86746_cov_4.301944 63330..63332 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2706.t1.CDS1	Gcaud2706.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_12_length_86746_cov_4.301944 63330..63602 -
Gcaud2706.t1.CDS2	Gcaud2706.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_12_length_86746_cov_4.301944 63683..63886 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2706.t1.exon1	Gcaud2706.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_12_length_86746_cov_4.301944 63330..63602 -
Gcaud2706.t1.exon2	Gcaud2706.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_12_length_86746_cov_4.301944 63683..63886 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2706.t1.intron1	Gcaud2706.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_12_length_86746_cov_4.301944 63603..63682 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2706.t1.start1	Gcaud2706.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_12_length_86746_cov_4.301944 63884..63886 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_12_length_86746_cov_4.301944:63330..63886-
coding sequence from alignment at NODE_12_length_86746_cov_4.301944:63330..63886-

mRNA sequence

>Gcaud2706.t1 ID=Gcaud2706.t1|Name=Gcaud2706.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=159bp
MSNSSAFVTSFSPFRRSALLAGPVSSNTVCPAFRRTRHVVKHATIRASVP
VEVDDVSFDEEVLKQSDTKPVLVDFYAAWCGPCKIVAPLMDWAAAEFEDL
KVCKVDTDKNERFVSEYAIRGLPTFAVFKKGKPYGLKEGAMGKNELERYI
EEYMKFDS*

spliced messenger RNA

>Gcaud2706.t1 ID=Gcaud2706.t1|Name=Gcaud2706.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=477bp|location=Sequence derived from alignment at NODE_12_length_86746_cov_4.301944:63330..63886- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAATTCTTCCGCTTTTGTCACATCTTTCTCGCCGTTCCGCAGATC
TGCGCTGCTCGCCGGCCCGGTAAGCAGCAATACCGTCTGTCCTGCTTTTC
GCCGTACAAGACATGTTGTCAAGCACGCTACTATTAGAGCATCCGTTCCA
GTGGAGGTAGATGATGTTTCGTTCGATGAAGAAGTGCTCAAGCAATCCGA
TACGAAGCCCGTGTTGGTAGACTTTTATGCCGCATGGTGCGGGCCCTGTA
AGATAGTTGCGCCGCTTATGGATTGGGCTGCCGCCGAGTTTGAAGACCTG
AAGGTCTGCAAGGTTGATACCGATAAGAATGAACGATTCGTGTCGGAATA
TGCGATCCGAGGCTTGCCAACCTTTGCCGTGTTTAAAAAGGGCAAGCCGT
ATGGACTCAAGGAGGGCGCCATGGGCAAGAACGAACTCGAAAGGTACATT
GAGGAGTACATGAAATTCGACAGTTGA

protein sequence of Gcaud2706.t1

>Gcaud2706.t1 ID=Gcaud2706.t1|Name=Gcaud2706.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=159bp
MSNSSAFVTSFSPFRRSALLAGPVSSNTVCPAFRRTRHVVKHATIRASVP
VEVDDVSFDEEVLKQSDTKPVLVDFYAAWCGPCKIVAPLMDWAAAEFEDL
KVCKVDTDKNERFVSEYAIRGLPTFAVFKKGKPYGLKEGAMGKNELERYI
EEYMKFDS*

mRNA from alignment at NODE_12_length_86746_cov_4.301944:63330..63886-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2706.t1 ID=Gcaud2706.t1|Name=Gcaud2706.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=557bp|location=Sequence derived from alignment at NODE_12_length_86746_cov_4.301944:63330..63886- (Gracilaria caudata M_176_S67 male)
ATGTCCAATTCTTCCGCTTTTGTCACATCTTTCTCGCCGTTCCGCAGATC
TGCGCTGCTCGCCGGCCCGGTAAGCAGCAATACCGTCTGTCCTGCTTTTC
GCCGTACAAGACATGTTGTCAAGCACGCTACTATTAGAGCATCCGTTCCA
GTGGAGGTAGATGATGTTTCGTTCGATGAAGAAGTGCTCAAGCAATCCGA
TACGGTACGTAAGCAAAATGCTAGGCACGACATGTGGCGCGCAGAACGTA
TTACAATGTGCTGACCGAGTTTGTGCGCGTGTAGAAGCCCGTGTTGGTAG
ACTTTTATGCCGCATGGTGCGGGCCCTGTAAGATAGTTGCGCCGCTTATG
GATTGGGCTGCCGCCGAGTTTGAAGACCTGAAGGTCTGCAAGGTTGATAC
CGATAAGAATGAACGATTCGTGTCGGAATATGCGATCCGAGGCTTGCCAA
CCTTTGCCGTGTTTAAAAAGGGCAAGCCGTATGGACTCAAGGAGGGCGCC
ATGGGCAAGAACGAACTCGAAAGGTACATTGAGGAGTACATGAAATTCGA
CAGTTGA

Coding sequence (CDS) from alignment at NODE_12_length_86746_cov_4.301944:63330..63886-

>Gcaud2706.t1 ID=Gcaud2706.t1|Name=Gcaud2706.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=477bp|location=Sequence derived from alignment at NODE_12_length_86746_cov_4.301944:63330..63886- (Gracilaria caudata M_176_S67 male)
ATGTCCAATTCTTCCGCTTTTGTCACATCTTTCTCGCCGTTCCGCAGATC
TGCGCTGCTCGCCGGCCCGGTAAGCAGCAATACCGTCTGTCCTGCTTTTC
GCCGTACAAGACATGTTGTCAAGCACGCTACTATTAGAGCATCCGTTCCA
GTGGAGGTAGATGATGTTTCGTTCGATGAAGAAGTGCTCAAGCAATCCGA
TACGAAGCCCGTGTTGGTAGACTTTTATGCCGCATGGTGCGGGCCCTGTA
AGATAGTTGCGCCGCTTATGGATTGGGCTGCCGCCGAGTTTGAAGACCTG
AAGGTCTGCAAGGTTGATACCGATAAGAATGAACGATTCGTGTCGGAATA
TGCGATCCGAGGCTTGCCAACCTTTGCCGTGTTTAAAAAGGGCAAGCCGT
ATGGACTCAAGGAGGGCGCCATGGGCAAGAACGAACTCGAAAGGTACATT
GAGGAGTACATGAAATTCGACAGTTGA