Gcaud2705.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2705.t1
Unique Name	Gcaud2705.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	400

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_12_length_86746_cov_4.301944	contig	NODE_12_length_86746_cov_4.301944:61485..62684 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	44056.XP_009033031.1
PFAMs	Glycos_transf_2
Max annot lvl	2759\|Eukaryota
Evalue	6.29e-41
EggNOG OGs	2EQX0@1\|root,2STUC@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2705	Gcaud2705	Gracilaria caudata M_176_S67 male	gene	NODE_12_length_86746_cov_4.301944 61485..62684 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2705.t1.stop1	Gcaud2705.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_12_length_86746_cov_4.301944 61485..61487 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2705.t1.CDS1	Gcaud2705.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_12_length_86746_cov_4.301944 61485..62684 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2705.t1.exon1	Gcaud2705.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_12_length_86746_cov_4.301944 61485..62684 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2705.t1.start1	Gcaud2705.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_12_length_86746_cov_4.301944 62682..62684 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2705.t1	Gcaud2705.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_12_length_86746_cov_4.301944 61485..62684 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_12_length_86746_cov_4.301944:61485..62684-
coding sequence from alignment at NODE_12_length_86746_cov_4.301944:61485..62684-

mRNA sequence

>Gcaud2705.t1 ID=Gcaud2705.t1|Name=Gcaud2705.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=400bp
MNGPTVSHSSRVPESSRNPRSTLLVLILILALRGQFYISSTFAGTRPVRT
FNSSHQCEENSWQICADILRDGLNDVGDASSVWLAHAYVGSNSHHAKDVS
QSSERYQCRCLIPQLHVKKPPLLTAIVQSFNHHANIANISTSLKSSTVVQ
EIVISEDGSTDGSLHDWHAALNEPHHFIIRSNNLHELRSYNRAMRMSSGD
IVVLLQDDDLLPLDDEWLKNAIKLFEALPDLGVLGGYIGQLWDHNTGQGY
EYGEQISTHGGLRQGNTKPLPFVEPTTKLPFMYAECVWIAPVFIRRDVLR
KAGGLELTIAKRGEPGVWQDCVFSYEAWTNGYTVGAYSAPFERGVGGHGS
ATSTMKVKQRERVYERAVAYTNRKYPRRRIHESITARNNQTLLPRTLAK*

spliced messenger RNA

>Gcaud2705.t1 ID=Gcaud2705.t1|Name=Gcaud2705.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1200bp|location=Sequence derived from alignment at NODE_12_length_86746_cov_4.301944:61485..62684- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGGTCCCACGGTTTCGCACTCGTCTCGAGTCCCAGAATCGTCCCG
AAATCCACGTTCAACTCTGCTGGTTCTCATCCTTATTCTTGCGTTGCGAG
GCCAGTTCTACATCTCTTCCACGTTTGCTGGTACAAGACCTGTACGCACA
TTCAATTCTTCTCACCAGTGCGAGGAGAATTCATGGCAGATATGCGCCGA
TATCTTACGCGACGGTTTGAATGATGTCGGCGATGCTTCAAGTGTTTGGC
TGGCTCATGCATACGTTGGATCTAATTCTCACCATGCGAAAGACGTTTCA
CAATCTTCAGAAAGGTATCAGTGTCGGTGTTTGATTCCTCAACTCCACGT
GAAGAAACCACCTTTGCTCACTGCCATTGTCCAGAGTTTTAACCATCATG
CCAATATTGCTAATATTTCAACTAGTCTCAAGTCTTCCACTGTGGTTCAG
GAGATCGTTATAAGTGAAGATGGATCCACAGATGGGTCCTTACACGACTG
GCATGCCGCTCTTAACGAACCGCACCACTTTATCATTCGCTCAAACAATC
TTCACGAATTACGAAGTTACAATCGTGCCATGCGAATGTCTTCTGGTGAC
ATTGTTGTGTTGTTACAAGATGATGATTTGTTGCCTCTCGATGACGAATG
GTTGAAGAATGCTATCAAGCTTTTCGAAGCATTACCCGATTTAGGAGTGT
TGGGTGGTTACATCGGTCAACTCTGGGACCACAATACAGGACAAGGATAC
GAGTATGGTGAGCAAATCAGTACACACGGTGGATTACGTCAAGGAAACAC
AAAGCCGTTACCGTTTGTGGAACCGACAACCAAGTTGCCATTCATGTATG
CCGAATGCGTTTGGATCGCACCAGTGTTCATCAGGAGAGACGTTTTAAGA
AAAGCCGGCGGATTGGAACTTACCATTGCCAAACGAGGAGAACCAGGTGT
TTGGCAAGACTGCGTTTTCAGCTATGAGGCATGGACTAACGGTTATACTG
TTGGTGCTTATTCCGCTCCTTTCGAACGAGGAGTTGGTGGTCATGGTTCC
GCAACATCAACAATGAAGGTTAAGCAGAGAGAACGCGTATACGAAAGAGC
AGTTGCATACACTAATCGCAAGTACCCAAGAAGAAGGATACATGAGTCTA
TTACGGCTCGAAACAATCAGACGTTATTACCTCGAACGCTCGCCAAGTAG

protein sequence of Gcaud2705.t1

>Gcaud2705.t1 ID=Gcaud2705.t1|Name=Gcaud2705.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=400bp
MNGPTVSHSSRVPESSRNPRSTLLVLILILALRGQFYISSTFAGTRPVRT
FNSSHQCEENSWQICADILRDGLNDVGDASSVWLAHAYVGSNSHHAKDVS
QSSERYQCRCLIPQLHVKKPPLLTAIVQSFNHHANIANISTSLKSSTVVQ
EIVISEDGSTDGSLHDWHAALNEPHHFIIRSNNLHELRSYNRAMRMSSGD
IVVLLQDDDLLPLDDEWLKNAIKLFEALPDLGVLGGYIGQLWDHNTGQGY
EYGEQISTHGGLRQGNTKPLPFVEPTTKLPFMYAECVWIAPVFIRRDVLR
KAGGLELTIAKRGEPGVWQDCVFSYEAWTNGYTVGAYSAPFERGVGGHGS
ATSTMKVKQRERVYERAVAYTNRKYPRRRIHESITARNNQTLLPRTLAK*

mRNA from alignment at NODE_12_length_86746_cov_4.301944:61485..62684-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2705.t1 ID=Gcaud2705.t1|Name=Gcaud2705.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1200bp|location=Sequence derived from alignment at NODE_12_length_86746_cov_4.301944:61485..62684- (Gracilaria caudata M_176_S67 male)
ATGAACGGTCCCACGGTTTCGCACTCGTCTCGAGTCCCAGAATCGTCCCG
AAATCCACGTTCAACTCTGCTGGTTCTCATCCTTATTCTTGCGTTGCGAG
GCCAGTTCTACATCTCTTCCACGTTTGCTGGTACAAGACCTGTACGCACA
TTCAATTCTTCTCACCAGTGCGAGGAGAATTCATGGCAGATATGCGCCGA
TATCTTACGCGACGGTTTGAATGATGTCGGCGATGCTTCAAGTGTTTGGC
TGGCTCATGCATACGTTGGATCTAATTCTCACCATGCGAAAGACGTTTCA
CAATCTTCAGAAAGGTATCAGTGTCGGTGTTTGATTCCTCAACTCCACGT
GAAGAAACCACCTTTGCTCACTGCCATTGTCCAGAGTTTTAACCATCATG
CCAATATTGCTAATATTTCAACTAGTCTCAAGTCTTCCACTGTGGTTCAG
GAGATCGTTATAAGTGAAGATGGATCCACAGATGGGTCCTTACACGACTG
GCATGCCGCTCTTAACGAACCGCACCACTTTATCATTCGCTCAAACAATC
TTCACGAATTACGAAGTTACAATCGTGCCATGCGAATGTCTTCTGGTGAC
ATTGTTGTGTTGTTACAAGATGATGATTTGTTGCCTCTCGATGACGAATG
GTTGAAGAATGCTATCAAGCTTTTCGAAGCATTACCCGATTTAGGAGTGT
TGGGTGGTTACATCGGTCAACTCTGGGACCACAATACAGGACAAGGATAC
GAGTATGGTGAGCAAATCAGTACACACGGTGGATTACGTCAAGGAAACAC
AAAGCCGTTACCGTTTGTGGAACCGACAACCAAGTTGCCATTCATGTATG
CCGAATGCGTTTGGATCGCACCAGTGTTCATCAGGAGAGACGTTTTAAGA
AAAGCCGGCGGATTGGAACTTACCATTGCCAAACGAGGAGAACCAGGTGT
TTGGCAAGACTGCGTTTTCAGCTATGAGGCATGGACTAACGGTTATACTG
TTGGTGCTTATTCCGCTCCTTTCGAACGAGGAGTTGGTGGTCATGGTTCC
GCAACATCAACAATGAAGGTTAAGCAGAGAGAACGCGTATACGAAAGAGC
AGTTGCATACACTAATCGCAAGTACCCAAGAAGAAGGATACATGAGTCTA
TTACGGCTCGAAACAATCAGACGTTATTACCTCGAACGCTCGCCAAGTAG

Coding sequence (CDS) from alignment at NODE_12_length_86746_cov_4.301944:61485..62684-

>Gcaud2705.t1 ID=Gcaud2705.t1|Name=Gcaud2705.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1200bp|location=Sequence derived from alignment at NODE_12_length_86746_cov_4.301944:61485..62684- (Gracilaria caudata M_176_S67 male)
ATGAACGGTCCCACGGTTTCGCACTCGTCTCGAGTCCCAGAATCGTCCCG
AAATCCACGTTCAACTCTGCTGGTTCTCATCCTTATTCTTGCGTTGCGAG
GCCAGTTCTACATCTCTTCCACGTTTGCTGGTACAAGACCTGTACGCACA
TTCAATTCTTCTCACCAGTGCGAGGAGAATTCATGGCAGATATGCGCCGA
TATCTTACGCGACGGTTTGAATGATGTCGGCGATGCTTCAAGTGTTTGGC
TGGCTCATGCATACGTTGGATCTAATTCTCACCATGCGAAAGACGTTTCA
CAATCTTCAGAAAGGTATCAGTGTCGGTGTTTGATTCCTCAACTCCACGT
GAAGAAACCACCTTTGCTCACTGCCATTGTCCAGAGTTTTAACCATCATG
CCAATATTGCTAATATTTCAACTAGTCTCAAGTCTTCCACTGTGGTTCAG
GAGATCGTTATAAGTGAAGATGGATCCACAGATGGGTCCTTACACGACTG
GCATGCCGCTCTTAACGAACCGCACCACTTTATCATTCGCTCAAACAATC
TTCACGAATTACGAAGTTACAATCGTGCCATGCGAATGTCTTCTGGTGAC
ATTGTTGTGTTGTTACAAGATGATGATTTGTTGCCTCTCGATGACGAATG
GTTGAAGAATGCTATCAAGCTTTTCGAAGCATTACCCGATTTAGGAGTGT
TGGGTGGTTACATCGGTCAACTCTGGGACCACAATACAGGACAAGGATAC
GAGTATGGTGAGCAAATCAGTACACACGGTGGATTACGTCAAGGAAACAC
AAAGCCGTTACCGTTTGTGGAACCGACAACCAAGTTGCCATTCATGTATG
CCGAATGCGTTTGGATCGCACCAGTGTTCATCAGGAGAGACGTTTTAAGA
AAAGCCGGCGGATTGGAACTTACCATTGCCAAACGAGGAGAACCAGGTGT
TTGGCAAGACTGCGTTTTCAGCTATGAGGCATGGACTAACGGTTATACTG
TTGGTGCTTATTCCGCTCCTTTCGAACGAGGAGTTGGTGGTCATGGTTCC
GCAACATCAACAATGAAGGTTAAGCAGAGAGAACGCGTATACGAAAGAGC
AGTTGCATACACTAATCGCAAGTACCCAAGAAGAAGGATACATGAGTCTA
TTACGGCTCGAAACAATCAGACGTTATTACCTCGAACGCTCGCCAAGTAG