Gcaud2702.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2702.t1
Unique NameGcaud2702.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length145
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_12_length_86746_cov_4.301944contigNODE_12_length_86746_cov_4.301944:54215..54649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ24201
PFAMsKOW,Ribosomal_L26
Max annot lvl35493|Streptophyta
KEGG koko:K02898
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Evalue8.52e-55
EggNOG OGsCOG0198@1|root,KOG3401@2759|Eukaryota,37IHY@33090|Viridiplantae,3GH26@35493|Streptophyta
Description60S ribosomal Protein
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2702Gcaud2702Gracilaria caudata M_176_S67 malegeneNODE_12_length_86746_cov_4.301944 54215..54649 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2702.t1.stop1Gcaud2702.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_12_length_86746_cov_4.301944 54215..54217 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2702.t1.CDS1Gcaud2702.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_12_length_86746_cov_4.301944 54215..54649 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2702.t1.exon1Gcaud2702.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_12_length_86746_cov_4.301944 54215..54649 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2702.t1.start1Gcaud2702.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_12_length_86746_cov_4.301944 54647..54649 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2702.t1Gcaud2702.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_12_length_86746_cov_4.301944 54215..54649 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2702.t1 ID=Gcaud2702.t1|Name=Gcaud2702.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=145bp
MKRSGAVSSSRRKARKAHFTAPSSVRRIIMSAPLSAELRQKYNVRSLPIR
KHDEVRVVRGQYKGEGKVLTCYRKKYVVHIERITRERANQMPVPIGIHPS
NCVITKIKMDKDRKAILDRKNREAKQEKGKFSESDVNVPMADVD*
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spliced messenger RNA

>Gcaud2702.t1 ID=Gcaud2702.t1|Name=Gcaud2702.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=435bp|location=Sequence derived from alignment at NODE_12_length_86746_cov_4.301944:54215..54649- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCGATCAGGAGCCGTATCTTCCTCGCGACGGAAGGCGCGTAAGGC
CCATTTCACCGCGCCGTCTTCCGTGCGTCGCATCATTATGTCTGCGCCAC
TATCCGCCGAGCTCCGTCAGAAGTACAACGTGCGCTCTCTCCCGATCCGA
AAGCACGACGAGGTGCGCGTTGTCCGTGGACAATACAAGGGTGAAGGAAA
GGTCCTTACATGCTACAGGAAAAAGTATGTCGTTCACATTGAACGTATTA
CTCGGGAGAGGGCCAACCAGATGCCGGTTCCTATTGGCATTCATCCTAGC
AACTGTGTCATCACCAAGATCAAGATGGATAAGGACAGAAAAGCCATCCT
AGACAGGAAGAATCGCGAGGCCAAGCAAGAGAAGGGCAAGTTCTCCGAGT
CTGATGTTAATGTGCCTATGGCTGACGTTGATTAA
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protein sequence of Gcaud2702.t1

>Gcaud2702.t1 ID=Gcaud2702.t1|Name=Gcaud2702.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=145bp
MKRSGAVSSSRRKARKAHFTAPSSVRRIIMSAPLSAELRQKYNVRSLPIR
KHDEVRVVRGQYKGEGKVLTCYRKKYVVHIERITRERANQMPVPIGIHPS
NCVITKIKMDKDRKAILDRKNREAKQEKGKFSESDVNVPMADVD*
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mRNA from alignment at NODE_12_length_86746_cov_4.301944:54215..54649-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2702.t1 ID=Gcaud2702.t1|Name=Gcaud2702.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=435bp|location=Sequence derived from alignment at NODE_12_length_86746_cov_4.301944:54215..54649- (Gracilaria caudata M_176_S67 male)
ATGAAGCGATCAGGAGCCGTATCTTCCTCGCGACGGAAGGCGCGTAAGGC
CCATTTCACCGCGCCGTCTTCCGTGCGTCGCATCATTATGTCTGCGCCAC
TATCCGCCGAGCTCCGTCAGAAGTACAACGTGCGCTCTCTCCCGATCCGA
AAGCACGACGAGGTGCGCGTTGTCCGTGGACAATACAAGGGTGAAGGAAA
GGTCCTTACATGCTACAGGAAAAAGTATGTCGTTCACATTGAACGTATTA
CTCGGGAGAGGGCCAACCAGATGCCGGTTCCTATTGGCATTCATCCTAGC
AACTGTGTCATCACCAAGATCAAGATGGATAAGGACAGAAAAGCCATCCT
AGACAGGAAGAATCGCGAGGCCAAGCAAGAGAAGGGCAAGTTCTCCGAGT
CTGATGTTAATGTGCCTATGGCTGACGTTGATTAA
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Coding sequence (CDS) from alignment at NODE_12_length_86746_cov_4.301944:54215..54649-

>Gcaud2702.t1 ID=Gcaud2702.t1|Name=Gcaud2702.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=435bp|location=Sequence derived from alignment at NODE_12_length_86746_cov_4.301944:54215..54649- (Gracilaria caudata M_176_S67 male)
ATGAAGCGATCAGGAGCCGTATCTTCCTCGCGACGGAAGGCGCGTAAGGC
CCATTTCACCGCGCCGTCTTCCGTGCGTCGCATCATTATGTCTGCGCCAC
TATCCGCCGAGCTCCGTCAGAAGTACAACGTGCGCTCTCTCCCGATCCGA
AAGCACGACGAGGTGCGCGTTGTCCGTGGACAATACAAGGGTGAAGGAAA
GGTCCTTACATGCTACAGGAAAAAGTATGTCGTTCACATTGAACGTATTA
CTCGGGAGAGGGCCAACCAGATGCCGGTTCCTATTGGCATTCATCCTAGC
AACTGTGTCATCACCAAGATCAAGATGGATAAGGACAGAAAAGCCATCCT
AGACAGGAAGAATCGCGAGGCCAAGCAAGAGAAGGGCAAGTTCTCCGAGT
CTGATGTTAATGTGCCTATGGCTGACGTTGATTAA
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