Gcaud270.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud270.t1
Unique Name	Gcaud270.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	307

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1999_length_7251_cov_5.898184	contig	NODE_1999_length_7251_cov_5.898184:3434..4354 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud270	Gcaud270	Gracilaria caudata M_176_S67 male	gene	NODE_1999_length_7251_cov_5.898184 3434..4354 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud270.t1.start1	Gcaud270.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1999_length_7251_cov_5.898184 3434..3436 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud270.t1.CDS1	Gcaud270.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1999_length_7251_cov_5.898184 3434..4354 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud270.t1.exon1	Gcaud270.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1999_length_7251_cov_5.898184 3434..4354 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud270.t1.stop1	Gcaud270.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1999_length_7251_cov_5.898184 4352..4354 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud270.t1	Gcaud270.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1999_length_7251_cov_5.898184 3434..4354 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1999_length_7251_cov_5.898184:3434..4354+
coding sequence from alignment at NODE_1999_length_7251_cov_5.898184:3434..4354+

mRNA sequence

>Gcaud270.t1 ID=Gcaud270.t1|Name=Gcaud270.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=307bp
MGIVLGIIDVIADVAVEATAVGVAASAADAVVEEVGQTIAEAVSEGIGQA
VGEGIGQAIGEGIGQAIGEDIEQAVGESIAEGTAEATAESTTEAIADGVG
EEAGSNALDSSVNEAANQVVSSGASQAVRSVTKAVLTSVVVEEITRNTIK
LIEMKESGNDIKKELGYIRDAMRHAKENLRTWNTQVNQALRKGRLESSVS
VSEGTNMSVGTLFSTEINSAVTNFLKSVQGSYATLSALTKQSDPSIDALK
NATRRVQAAFLEAAPAYLAAVTSWDTEDSDIRNKAHLDFHVAQAQNDIKL
VRENRV*

spliced messenger RNA

>Gcaud270.t1 ID=Gcaud270.t1|Name=Gcaud270.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=921bp|location=Sequence derived from alignment at NODE_1999_length_7251_cov_5.898184:3434..4354+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTATCGTACTGGGAATTATCGATGTCATTGCCGATGTTGCAGTTGA
AGCGACAGCTGTAGGTGTTGCCGCAAGTGCAGCTGATGCCGTCGTGGAAG
AAGTGGGCCAGACAATAGCAGAAGCAGTGAGCGAGGGCATAGGACAAGCC
GTGGGCGAGGGCATAGGACAAGCCATAGGCGAGGGCATAGGACAAGCCAT
AGGCGAGGACATAGAACAAGCCGTAGGCGAGAGCATAGCAGAGGGAACCG
CTGAAGCTACCGCTGAAAGTACCACTGAAGCAATTGCCGATGGGGTGGGT
GAAGAAGCAGGATCAAATGCGTTGGACTCGAGTGTGAACGAGGCAGCTAA
CCAAGTCGTTTCATCCGGCGCCAGTCAAGCCGTTCGGAGTGTGACCAAAG
CTGTCCTTACCAGCGTGGTTGTGGAAGAAATTACGCGCAATACCATTAAG
CTTATCGAAATGAAAGAATCTGGAAATGATATCAAGAAGGAATTGGGTTA
CATCAGGGACGCCATGAGACACGCGAAAGAGAATCTAAGGACCTGGAATA
CGCAAGTTAACCAAGCTTTAAGAAAGGGACGACTGGAGAGTTCAGTATCT
GTTTCTGAAGGAACAAATATGTCTGTGGGGACACTGTTCAGCACCGAGAT
AAATAGCGCGGTAACCAACTTTCTCAAGTCGGTACAAGGATCCTACGCTA
CTTTATCTGCACTTACCAAACAGAGTGATCCATCTATTGACGCTTTGAAG
AACGCAACCAGAAGGGTTCAGGCAGCGTTTCTTGAGGCTGCGCCTGCGTA
TTTGGCTGCCGTAACGTCATGGGATACGGAGGACAGTGATATCAGAAACA
AAGCTCATCTCGATTTCCATGTTGCACAGGCGCAGAATGACATTAAGCTG
GTCAGAGAGAATCGGGTTTGA

protein sequence of Gcaud270.t1

>Gcaud270.t1 ID=Gcaud270.t1|Name=Gcaud270.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=307bp
MGIVLGIIDVIADVAVEATAVGVAASAADAVVEEVGQTIAEAVSEGIGQA
VGEGIGQAIGEGIGQAIGEDIEQAVGESIAEGTAEATAESTTEAIADGVG
EEAGSNALDSSVNEAANQVVSSGASQAVRSVTKAVLTSVVVEEITRNTIK
LIEMKESGNDIKKELGYIRDAMRHAKENLRTWNTQVNQALRKGRLESSVS
VSEGTNMSVGTLFSTEINSAVTNFLKSVQGSYATLSALTKQSDPSIDALK
NATRRVQAAFLEAAPAYLAAVTSWDTEDSDIRNKAHLDFHVAQAQNDIKL
VRENRV*

mRNA from alignment at NODE_1999_length_7251_cov_5.898184:3434..4354+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud270.t1 ID=Gcaud270.t1|Name=Gcaud270.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=921bp|location=Sequence derived from alignment at NODE_1999_length_7251_cov_5.898184:3434..4354+ (Gracilaria caudata M_176_S67 male)
ATGGGTATCGTACTGGGAATTATCGATGTCATTGCCGATGTTGCAGTTGA
AGCGACAGCTGTAGGTGTTGCCGCAAGTGCAGCTGATGCCGTCGTGGAAG
AAGTGGGCCAGACAATAGCAGAAGCAGTGAGCGAGGGCATAGGACAAGCC
GTGGGCGAGGGCATAGGACAAGCCATAGGCGAGGGCATAGGACAAGCCAT
AGGCGAGGACATAGAACAAGCCGTAGGCGAGAGCATAGCAGAGGGAACCG
CTGAAGCTACCGCTGAAAGTACCACTGAAGCAATTGCCGATGGGGTGGGT
GAAGAAGCAGGATCAAATGCGTTGGACTCGAGTGTGAACGAGGCAGCTAA
CCAAGTCGTTTCATCCGGCGCCAGTCAAGCCGTTCGGAGTGTGACCAAAG
CTGTCCTTACCAGCGTGGTTGTGGAAGAAATTACGCGCAATACCATTAAG
CTTATCGAAATGAAAGAATCTGGAAATGATATCAAGAAGGAATTGGGTTA
CATCAGGGACGCCATGAGACACGCGAAAGAGAATCTAAGGACCTGGAATA
CGCAAGTTAACCAAGCTTTAAGAAAGGGACGACTGGAGAGTTCAGTATCT
GTTTCTGAAGGAACAAATATGTCTGTGGGGACACTGTTCAGCACCGAGAT
AAATAGCGCGGTAACCAACTTTCTCAAGTCGGTACAAGGATCCTACGCTA
CTTTATCTGCACTTACCAAACAGAGTGATCCATCTATTGACGCTTTGAAG
AACGCAACCAGAAGGGTTCAGGCAGCGTTTCTTGAGGCTGCGCCTGCGTA
TTTGGCTGCCGTAACGTCATGGGATACGGAGGACAGTGATATCAGAAACA
AAGCTCATCTCGATTTCCATGTTGCACAGGCGCAGAATGACATTAAGCTG
GTCAGAGAGAATCGGGTTTGA

Coding sequence (CDS) from alignment at NODE_1999_length_7251_cov_5.898184:3434..4354+

>Gcaud270.t1 ID=Gcaud270.t1|Name=Gcaud270.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=921bp|location=Sequence derived from alignment at NODE_1999_length_7251_cov_5.898184:3434..4354+ (Gracilaria caudata M_176_S67 male)
ATGGGTATCGTACTGGGAATTATCGATGTCATTGCCGATGTTGCAGTTGA
AGCGACAGCTGTAGGTGTTGCCGCAAGTGCAGCTGATGCCGTCGTGGAAG
AAGTGGGCCAGACAATAGCAGAAGCAGTGAGCGAGGGCATAGGACAAGCC
GTGGGCGAGGGCATAGGACAAGCCATAGGCGAGGGCATAGGACAAGCCAT
AGGCGAGGACATAGAACAAGCCGTAGGCGAGAGCATAGCAGAGGGAACCG
CTGAAGCTACCGCTGAAAGTACCACTGAAGCAATTGCCGATGGGGTGGGT
GAAGAAGCAGGATCAAATGCGTTGGACTCGAGTGTGAACGAGGCAGCTAA
CCAAGTCGTTTCATCCGGCGCCAGTCAAGCCGTTCGGAGTGTGACCAAAG
CTGTCCTTACCAGCGTGGTTGTGGAAGAAATTACGCGCAATACCATTAAG
CTTATCGAAATGAAAGAATCTGGAAATGATATCAAGAAGGAATTGGGTTA
CATCAGGGACGCCATGAGACACGCGAAAGAGAATCTAAGGACCTGGAATA
CGCAAGTTAACCAAGCTTTAAGAAAGGGACGACTGGAGAGTTCAGTATCT
GTTTCTGAAGGAACAAATATGTCTGTGGGGACACTGTTCAGCACCGAGAT
AAATAGCGCGGTAACCAACTTTCTCAAGTCGGTACAAGGATCCTACGCTA
CTTTATCTGCACTTACCAAACAGAGTGATCCATCTATTGACGCTTTGAAG
AACGCAACCAGAAGGGTTCAGGCAGCGTTTCTTGAGGCTGCGCCTGCGTA
TTTGGCTGCCGTAACGTCATGGGATACGGAGGACAGTGATATCAGAAACA
AAGCTCATCTCGATTTCCATGTTGCACAGGCGCAGAATGACATTAAGCTG
GTCAGAGAGAATCGGGTTTGA