Gcaud2697.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2697.t1
Unique Name	Gcaud2697.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	360

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_12_length_86746_cov_4.301944	contig	NODE_12_length_86746_cov_4.301944:43444..44769 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	316057.RPD_0116
Preferred name	glnD
PFAMs	ACT,GlnD_UR_UTase,GlnE,HD,NTP_transf_2
Max annot lvl	28211\|Alphaproteobacteria
KEGG ko	ko:K00990
KEGG Pathway	ko02020,map02020
GOs	GO:0006355,GO:0006464,GO:0006807,GO:0006808,GO:0007154,GO:0007584,GO:0008150,GO:0008152,GO:0009605,GO:0009719,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0018175,GO:0018177,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0036211,GO:0042221,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0070887,GO:0071310,GO:0071417,GO:0071495,GO:0071496,GO:0071704,GO:0080090,GO:0090293,GO:1901564,GO:1901698,GO:1901699,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Evalue	1.13e-07
EggNOG OGs	COG2844@1\|root,COG2844@2\|Bacteria,1MV54@1224\|Proteobacteria,2TSV0@28211\|Alphaproteobacteria,3JV2M@41294\|Bradyrhizobiaceae
EC	2.7.7.59
Description	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
COG category	O
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2697	Gcaud2697	Gracilaria caudata M_176_S67 male	gene	NODE_12_length_86746_cov_4.301944 43444..44769 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2697.t1	Gcaud2697.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_12_length_86746_cov_4.301944 43444..44769 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2697.t1.start1	Gcaud2697.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_12_length_86746_cov_4.301944 43444..43446 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2697.t1.CDS1	Gcaud2697.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_12_length_86746_cov_4.301944 43444..44421 +
Gcaud2697.t1.CDS2	Gcaud2697.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_12_length_86746_cov_4.301944 44492..44585 +
Gcaud2697.t1.CDS3	Gcaud2697.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_12_length_86746_cov_4.301944 44762..44769 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2697.t1.exon1	Gcaud2697.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_12_length_86746_cov_4.301944 43444..44421 +
Gcaud2697.t1.exon2	Gcaud2697.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_12_length_86746_cov_4.301944 44492..44585 +
Gcaud2697.t1.exon3	Gcaud2697.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_12_length_86746_cov_4.301944 44762..44769 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2697.t1.intron1	Gcaud2697.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_12_length_86746_cov_4.301944 44422..44491 +
Gcaud2697.t1.intron2	Gcaud2697.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_12_length_86746_cov_4.301944 44586..44761 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2697.t1.stop1	Gcaud2697.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_12_length_86746_cov_4.301944 44767..44769 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_12_length_86746_cov_4.301944:43444..44769+
coding sequence from alignment at NODE_12_length_86746_cov_4.301944:43444..44769+

mRNA sequence

>Gcaud2697.t1 ID=Gcaud2697.t1|Name=Gcaud2697.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=360bp
MAANDAPSTAEPLSQLRTQVYGPEEDICTFGEECNLSEEIVKESPALNQL
VSKYVFPMRDHNTQVFFDNSLSDDHTIMIVFAEDRHGLVLDIVSVLKALS
VRVHRTASSENDALQFMLHRIEGELRSVRELGISINNCVAFWITDEATGE
KIFDDGPRLDQLTTCIKLELNTPYPRPRPVTDDAWHRISVQKNRADRYTV
ISVQTSDRPRLLAELTNAFASINIDVASATINTFSERVENTFFVTKRGFK
QPLSEADIKLALKNVAKALLKVGQRDPSESFWYQVRDGTAVIIAEAIFID
EVNNRELAMFRFSQFETPNFRGRLPDFVEQAIHLVNYIHVIVSVDRPPRL
SSRLRDVGQ*

spliced messenger RNA

>Gcaud2697.t1 ID=Gcaud2697.t1|Name=Gcaud2697.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1080bp|location=Sequence derived from alignment at NODE_12_length_86746_cov_4.301944:43444..44769+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCCAACGACGCCCCCTCCACCGCGGAGCCGCTGTCGCAGCTTCG
CACCCAGGTGTACGGGCCCGAGGAAGACATCTGCACCTTTGGAGAAGAGT
GTAATCTTTCGGAAGAAATTGTGAAGGAGTCCCCCGCTCTCAACCAACTC
GTGTCCAAATACGTCTTCCCCATGCGCGACCACAACACACAGGTCTTCTT
CGATAACTCCTTGTCAGACGACCACACTATCATGATTGTCTTCGCTGAGG
ATAGACATGGACTTGTGCTCGACATTGTATCAGTGCTCAAGGCGCTTTCG
GTACGAGTTCACCGCACCGCCAGCAGCGAGAATGATGCGCTTCAATTTAT
GCTCCATCGTATTGAAGGCGAGTTACGTTCGGTTCGCGAGCTCGGTATTT
CTATTAACAACTGCGTGGCCTTCTGGATTACTGATGAAGCCACCGGCGAA
AAGATCTTTGATGACGGTCCCAGACTTGATCAGCTTACTACCTGTATCAA
GCTTGAGCTCAACACACCTTACCCGCGTCCGCGTCCTGTCACAGATGACG
CTTGGCATCGCATCTCTGTGCAGAAGAATCGTGCCGACCGCTACACTGTG
ATATCTGTTCAGACTTCCGATCGACCCCGTCTGCTCGCCGAACTCACCAA
CGCTTTTGCCTCCATCAACATTGATGTCGCAAGCGCTACCATCAATACCT
TTTCCGAACGTGTAGAGAACACGTTTTTCGTCACCAAAAGAGGCTTTAAG
CAGCCATTGTCTGAAGCAGATATCAAACTCGCCTTGAAAAATGTCGCCAA
GGCTCTACTCAAAGTCGGACAGAGAGATCCGTCGGAGTCGTTTTGGTACC
AAGTACGAGACGGCACGGCCGTCATCATTGCCGAAGCTATATTTATCGAT
GAAGTCAACAACCGCGAGCTTGCCATGTTCCGTTTCTCTCAGTTCGAAAC
CCCCAACTTCAGGGGCCGCCTGCCTGACTTTGTAGAACAAGCTATTCATC
TTGTAAATTACATTCATGTCATTGTATCAGTGGATCGCCCTCCTCGTCTC
TCGAGCCGTTTACGAGACGTAGGACAATAA

protein sequence of Gcaud2697.t1

>Gcaud2697.t1 ID=Gcaud2697.t1|Name=Gcaud2697.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=360bp
MAANDAPSTAEPLSQLRTQVYGPEEDICTFGEECNLSEEIVKESPALNQL
VSKYVFPMRDHNTQVFFDNSLSDDHTIMIVFAEDRHGLVLDIVSVLKALS
VRVHRTASSENDALQFMLHRIEGELRSVRELGISINNCVAFWITDEATGE
KIFDDGPRLDQLTTCIKLELNTPYPRPRPVTDDAWHRISVQKNRADRYTV
ISVQTSDRPRLLAELTNAFASINIDVASATINTFSERVENTFFVTKRGFK
QPLSEADIKLALKNVAKALLKVGQRDPSESFWYQVRDGTAVIIAEAIFID
EVNNRELAMFRFSQFETPNFRGRLPDFVEQAIHLVNYIHVIVSVDRPPRL
SSRLRDVGQ*

mRNA from alignment at NODE_12_length_86746_cov_4.301944:43444..44769+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2697.t1 ID=Gcaud2697.t1|Name=Gcaud2697.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1326bp|location=Sequence derived from alignment at NODE_12_length_86746_cov_4.301944:43444..44769+ (Gracilaria caudata M_176_S67 male)
ATGGCCGCCAACGACGCCCCCTCCACCGCGGAGCCGCTGTCGCAGCTTCG
CACCCAGGTGTACGGGCCCGAGGAAGACATCTGCACCTTTGGAGAAGAGT
GTAATCTTTCGGAAGAAATTGTGAAGGAGTCCCCCGCTCTCAACCAACTC
GTGTCCAAATACGTCTTCCCCATGCGCGACCACAACACACAGGTCTTCTT
CGATAACTCCTTGTCAGACGACCACACTATCATGATTGTCTTCGCTGAGG
ATAGACATGGACTTGTGCTCGACATTGTATCAGTGCTCAAGGCGCTTTCG
GTACGAGTTCACCGCACCGCCAGCAGCGAGAATGATGCGCTTCAATTTAT
GCTCCATCGTATTGAAGGCGAGTTACGTTCGGTTCGCGAGCTCGGTATTT
CTATTAACAACTGCGTGGCCTTCTGGATTACTGATGAAGCCACCGGCGAA
AAGATCTTTGATGACGGTCCCAGACTTGATCAGCTTACTACCTGTATCAA
GCTTGAGCTCAACACACCTTACCCGCGTCCGCGTCCTGTCACAGATGACG
CTTGGCATCGCATCTCTGTGCAGAAGAATCGTGCCGACCGCTACACTGTG
ATATCTGTTCAGACTTCCGATCGACCCCGTCTGCTCGCCGAACTCACCAA
CGCTTTTGCCTCCATCAACATTGATGTCGCAAGCGCTACCATCAATACCT
TTTCCGAACGTGTAGAGAACACGTTTTTCGTCACCAAAAGAGGCTTTAAG
CAGCCATTGTCTGAAGCAGATATCAAACTCGCCTTGAAAAATGTCGCCAA
GGCTCTACTCAAAGTCGGACAGAGAGATCCGTCGGAGTCGTTTTGGTACC
AAGTACGAGACGGCACGGCCGTCATCATTGCCGAAGCTATATTTATCGAT
GAAGTCAACAACCGCGAGCTTGCCATGTTCCGTTTCTCTCAGTTCGAAAC
CCCCAACTTCAGGGGCCGCCTGCCTGACGTACCATATTGTCCCATTCTTC
TTAAATAGTGATGATAAGTAAGCGTTGTTCAATTATTCAACTACGAAGTT
TGTAGAACAAGCTATTCATCTTGTAAATTACATTCATGTCATTGTATCAG
TGGATCGCCCTCCTCGTCTCTCGAGCCGTTTACGAGACGTAGGTACGTTC
ATTCAGTCATTGTTTTCTCTCTACTAAACTTCTCGAGCTTCAGCTAGACC
ATTGTCCCAACCCATTCAGCTTCACACAAAAAAAAAAAAGTAACAGCTCG
AGGAAAACTACCCGACAACGCGCTTCCCTAGAAACTTCTCCATGCTAACA
TTGTCTGTACCCTTGTAGGACAATAA

Coding sequence (CDS) from alignment at NODE_12_length_86746_cov_4.301944:43444..44769+

>Gcaud2697.t1 ID=Gcaud2697.t1|Name=Gcaud2697.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1080bp|location=Sequence derived from alignment at NODE_12_length_86746_cov_4.301944:43444..44769+ (Gracilaria caudata M_176_S67 male)
ATGGCCGCCAACGACGCCCCCTCCACCGCGGAGCCGCTGTCGCAGCTTCG
CACCCAGGTGTACGGGCCCGAGGAAGACATCTGCACCTTTGGAGAAGAGT
GTAATCTTTCGGAAGAAATTGTGAAGGAGTCCCCCGCTCTCAACCAACTC
GTGTCCAAATACGTCTTCCCCATGCGCGACCACAACACACAGGTCTTCTT
CGATAACTCCTTGTCAGACGACCACACTATCATGATTGTCTTCGCTGAGG
ATAGACATGGACTTGTGCTCGACATTGTATCAGTGCTCAAGGCGCTTTCG
GTACGAGTTCACCGCACCGCCAGCAGCGAGAATGATGCGCTTCAATTTAT
GCTCCATCGTATTGAAGGCGAGTTACGTTCGGTTCGCGAGCTCGGTATTT
CTATTAACAACTGCGTGGCCTTCTGGATTACTGATGAAGCCACCGGCGAA
AAGATCTTTGATGACGGTCCCAGACTTGATCAGCTTACTACCTGTATCAA
GCTTGAGCTCAACACACCTTACCCGCGTCCGCGTCCTGTCACAGATGACG
CTTGGCATCGCATCTCTGTGCAGAAGAATCGTGCCGACCGCTACACTGTG
ATATCTGTTCAGACTTCCGATCGACCCCGTCTGCTCGCCGAACTCACCAA
CGCTTTTGCCTCCATCAACATTGATGTCGCAAGCGCTACCATCAATACCT
TTTCCGAACGTGTAGAGAACACGTTTTTCGTCACCAAAAGAGGCTTTAAG
CAGCCATTGTCTGAAGCAGATATCAAACTCGCCTTGAAAAATGTCGCCAA
GGCTCTACTCAAAGTCGGACAGAGAGATCCGTCGGAGTCGTTTTGGTACC
AAGTACGAGACGGCACGGCCGTCATCATTGCCGAAGCTATATTTATCGAT
GAAGTCAACAACCGCGAGCTTGCCATGTTCCGTTTCTCTCAGTTCGAAAC
CCCCAACTTCAGGGGCCGCCTGCCTGACTTTGTAGAACAAGCTATTCATC
TTGTAAATTACATTCATGTCATTGTATCAGTGGATCGCCCTCCTCGTCTC
TCGAGCCGTTTACGAGACGTAGGACAATAA