Gcaud2693.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2693.t1
Unique NameGcaud2693.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length353
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_12_length_86746_cov_4.301944contigNODE_12_length_86746_cov_4.301944:31726..33107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707621.1
PFAMsMito_carr
Max annot lvl2759|Eukaryota
KEGG rclassRC00613,RC01003
KEGG koko:K08770,ko:K10807,ko:K15115
KEGG TC2.A.29.10.1,2.A.29.10.2,2.A.29.10.3,2.A.29.10.5
KEGG ReactionR02017,R02019,R02024,R08363,R08364,R11893
KEGG Pathwayko00230,ko00240,ko00480,ko00983,ko01100,ko03320,map00230,map00240,map00480,map00983,map01100,map03320
KEGG ModuleM00053
GOsGO:0003674,GO:0005215,GO:0005342,GO:0005477,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006820,GO:0006839,GO:0006848,GO:0006850,GO:0006862,GO:0008028,GO:0008150,GO:0008509,GO:0008514,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0015075,GO:0015215,GO:0015291,GO:0015318,GO:0015355,GO:0015605,GO:0015711,GO:0015718,GO:0015748,GO:0015849,GO:0015931,GO:0015932,GO:0016020,GO:0016021,GO:0019866,GO:0022804,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031969,GO:0031975,GO:0034220,GO:0035352,GO:0042170,GO:0043132,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050833,GO:0051179,GO:0051181,GO:0051182,GO:0051184,GO:0051185,GO:0051234,GO:0051724,GO:0055085,GO:0071702,GO:0071705,GO:0098656,GO:1901475,GO:1901679,GO:1903825,GO:1905039,GO:1990542,GO:1990549
Evalue2.69e-48
EggNOG OGsKOG0764@1|root,KOG0764@2759|Eukaryota
EC1.17.4.1
DescriptionBelongs to the mitochondrial carrier (TC 2.A.29) family
COG categoryU
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko03400,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2693Gcaud2693Gracilaria caudata M_176_S67 malegeneNODE_12_length_86746_cov_4.301944 31726..33107 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2693.t1Gcaud2693.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_12_length_86746_cov_4.301944 31726..33107 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2693.t1.stop1Gcaud2693.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_12_length_86746_cov_4.301944 31726..31728 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2693.t1.CDS1Gcaud2693.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_12_length_86746_cov_4.301944 31726..31850 -
Gcaud2693.t1.CDS2Gcaud2693.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_12_length_86746_cov_4.301944 32073..32160 -
Gcaud2693.t1.CDS3Gcaud2693.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_12_length_86746_cov_4.301944 32262..33107 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2693.t1.exon1Gcaud2693.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_12_length_86746_cov_4.301944 31726..31850 -
Gcaud2693.t1.exon2Gcaud2693.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_12_length_86746_cov_4.301944 32073..32160 -
Gcaud2693.t1.exon3Gcaud2693.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_12_length_86746_cov_4.301944 32262..33107 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2693.t1.intron1Gcaud2693.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_12_length_86746_cov_4.301944 31851..32072 -
Gcaud2693.t1.intron2Gcaud2693.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_12_length_86746_cov_4.301944 32161..32261 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2693.t1.start1Gcaud2693.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_12_length_86746_cov_4.301944 33105..33107 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2693.t1 ID=Gcaud2693.t1|Name=Gcaud2693.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=353bp
MEHERASPRRVDPRVAAFSGAMSGALASVATHPLDVVRTKLATQRHFRGA
QPPRYRGTLGTLRRVFSEEGVSGLFRGITPAVVSHAPAAAIFFSTYSFLR
ARVPDRMLAPMFPREVSTSAWAAGGGWITTCALLNPLFVLKTKQQTQLVR
ANPHAPLKYTGLLSSFRVVVSEQGLRGLYVGTLAAMAGFPGAMIQMPLYE
YLKTAGGQHTDPSPLRVAVSSACSASTVGIAMYPIEVVRLRLQAQNPSAH
HYSGIFDAFKKIFCSEGITAFYRGLGTGLIRSPVLPTTPPQAITVSYAHS
DCALPVVFCHRSMCVSTISEPGSCVMLSHMFAINHDLELTTCSRGTCSPA
HY*
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spliced messenger RNA

>Gcaud2693.t1 ID=Gcaud2693.t1|Name=Gcaud2693.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1059bp|location=Sequence derived from alignment at NODE_12_length_86746_cov_4.301944:31726..33107- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCACGAACGCGCGTCACCGCGCCGCGTGGACCCGCGCGTGGCCGC
CTTCTCCGGCGCCATGTCCGGCGCGCTGGCGTCGGTGGCCACGCACCCGC
TGGACGTCGTGCGCACCAAGCTCGCCACACAGCGCCACTTTCGCGGCGCG
CAACCGCCGCGCTACCGCGGCACGCTGGGCACGCTGCGTCGCGTGTTCTC
CGAGGAAGGTGTGAGCGGCCTGTTTCGCGGCATCACGCCCGCGGTGGTGT
CGCACGCGCCCGCGGCGGCCATTTTTTTCAGCACGTACTCGTTCTTGCGC
GCGAGGGTGCCGGATCGCATGCTGGCGCCCATGTTTCCGCGCGAGGTGTC
GACGTCGGCGTGGGCGGCGGGTGGTGGTTGGATTACCACTTGTGCGTTGC
TCAACCCGTTGTTTGTGCTCAAGACAAAGCAACAGACGCAGCTGGTTCGC
GCCAATCCGCACGCGCCGCTCAAGTATACGGGCTTGCTCTCGTCGTTTCG
CGTCGTGGTGTCGGAGCAGGGCTTGCGTGGCTTGTACGTGGGCACCTTGG
CCGCCATGGCCGGCTTTCCGGGCGCCATGATTCAGATGCCGTTGTATGAG
TATCTCAAGACCGCTGGTGGCCAACACACCGATCCGTCGCCACTGCGAGT
GGCCGTGTCCAGTGCGTGCTCCGCCTCCACCGTGGGCATTGCCATGTACC
CCATCGAAGTCGTTCGTCTGCGTTTGCAGGCGCAGAATCCGTCCGCACAC
CACTACTCGGGCATTTTCGATGCCTTCAAGAAGATATTCTGCTCCGAAGG
CATCACTGCCTTTTACCGCGGTCTGGGCACGGGCCTAATACGATCACCGG
TGCTGCCCACTACTCCGCCGCAAGCTATCACCGTGTCGTACGCTCATTCT
GATTGCGCTCTGCCAGTGGTCTTTTGCCATCGTTCCATGTGTGTCTCCAC
AATATCTGAGCCAGGTTCTTGTGTGATGCTGTCACACATGTTCGCCATCA
ACCATGATCTCGAGTTGACTACCTGCTCTCGCGGGACTTGCAGCCCGGCG
CACTATTGA
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protein sequence of Gcaud2693.t1

>Gcaud2693.t1 ID=Gcaud2693.t1|Name=Gcaud2693.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=353bp
MEHERASPRRVDPRVAAFSGAMSGALASVATHPLDVVRTKLATQRHFRGA
QPPRYRGTLGTLRRVFSEEGVSGLFRGITPAVVSHAPAAAIFFSTYSFLR
ARVPDRMLAPMFPREVSTSAWAAGGGWITTCALLNPLFVLKTKQQTQLVR
ANPHAPLKYTGLLSSFRVVVSEQGLRGLYVGTLAAMAGFPGAMIQMPLYE
YLKTAGGQHTDPSPLRVAVSSACSASTVGIAMYPIEVVRLRLQAQNPSAH
HYSGIFDAFKKIFCSEGITAFYRGLGTGLIRSPVLPTTPPQAITVSYAHS
DCALPVVFCHRSMCVSTISEPGSCVMLSHMFAINHDLELTTCSRGTCSPA
HY*
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mRNA from alignment at NODE_12_length_86746_cov_4.301944:31726..33107-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2693.t1 ID=Gcaud2693.t1|Name=Gcaud2693.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1382bp|location=Sequence derived from alignment at NODE_12_length_86746_cov_4.301944:31726..33107- (Gracilaria caudata M_176_S67 male)
ATGGAGCACGAACGCGCGTCACCGCGCCGCGTGGACCCGCGCGTGGCCGC
CTTCTCCGGCGCCATGTCCGGCGCGCTGGCGTCGGTGGCCACGCACCCGC
TGGACGTCGTGCGCACCAAGCTCGCCACACAGCGCCACTTTCGCGGCGCG
CAACCGCCGCGCTACCGCGGCACGCTGGGCACGCTGCGTCGCGTGTTCTC
CGAGGAAGGTGTGAGCGGCCTGTTTCGCGGCATCACGCCCGCGGTGGTGT
CGCACGCGCCCGCGGCGGCCATTTTTTTCAGCACGTACTCGTTCTTGCGC
GCGAGGGTGCCGGATCGCATGCTGGCGCCCATGTTTCCGCGCGAGGTGTC
GACGTCGGCGTGGGCGGCGGGTGGTGGTTGGATTACCACTTGTGCGTTGC
TCAACCCGTTGTTTGTGCTCAAGACAAAGCAACAGACGCAGCTGGTTCGC
GCCAATCCGCACGCGCCGCTCAAGTATACGGGCTTGCTCTCGTCGTTTCG
CGTCGTGGTGTCGGAGCAGGGCTTGCGTGGCTTGTACGTGGGCACCTTGG
CCGCCATGGCCGGCTTTCCGGGCGCCATGATTCAGATGCCGTTGTATGAG
TATCTCAAGACCGCTGGTGGCCAACACACCGATCCGTCGCCACTGCGAGT
GGCCGTGTCCAGTGCGTGCTCCGCCTCCACCGTGGGCATTGCCATGTACC
CCATCGAAGTCGTTCGTCTGCGTTTGCAGGCGCAGAATCCGTCCGCACAC
CACTACTCGGGCATTTTCGATGCCTTCAAGAAGATATTCTGCTCCGAAGG
CATCACTGCCTTTTACCGCGGTCTGGGCACGGGCCTAATACGATCAGTGC
CGCAGAGTGCCATTGGCCTTAGTTGTTACGAAACTGTGCTACGGATAAGC
TCGGCCATTGTGGAAGCTTGGACCGATCAACCGAGTATTGCATGAAGCCG
GTGCTGCCCACTACTCCGCCGCAAGCTATCACCGTGTCGTACGCTCATTC
TGATTGCGCTCTGCCAGTGGTCTTTTGCCATCGTTGTACGTCACCGCGCA
GCAATTCACTACTTGTGCATCATCGCGTTCGCGCACTTGCTCTACGGCTG
CTACACGGCCAGAGTCAATGCATCTGGCGTCTACAGTTCAATGGCTTCTG
TCTGGCGAGCAAGACACAAACGGCGTATCCCCGCCGCATGTGAGCCGTTA
TGTATGTACCTAACTCAACAACACGTCATCGTCATCTTCCACTGTACGTA
TGCGCAGCCATGTGTGTCTCCACAATATCTGAGCCAGGTTCTTGTGTGAT
GCTGTCACACATGTTCGCCATCAACCATGATCTCGAGTTGACTACCTGCT
CTCGCGGGACTTGCAGCCCGGCGCACTATTGA
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Coding sequence (CDS) from alignment at NODE_12_length_86746_cov_4.301944:31726..33107-

>Gcaud2693.t1 ID=Gcaud2693.t1|Name=Gcaud2693.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1059bp|location=Sequence derived from alignment at NODE_12_length_86746_cov_4.301944:31726..33107- (Gracilaria caudata M_176_S67 male)
ATGGAGCACGAACGCGCGTCACCGCGCCGCGTGGACCCGCGCGTGGCCGC
CTTCTCCGGCGCCATGTCCGGCGCGCTGGCGTCGGTGGCCACGCACCCGC
TGGACGTCGTGCGCACCAAGCTCGCCACACAGCGCCACTTTCGCGGCGCG
CAACCGCCGCGCTACCGCGGCACGCTGGGCACGCTGCGTCGCGTGTTCTC
CGAGGAAGGTGTGAGCGGCCTGTTTCGCGGCATCACGCCCGCGGTGGTGT
CGCACGCGCCCGCGGCGGCCATTTTTTTCAGCACGTACTCGTTCTTGCGC
GCGAGGGTGCCGGATCGCATGCTGGCGCCCATGTTTCCGCGCGAGGTGTC
GACGTCGGCGTGGGCGGCGGGTGGTGGTTGGATTACCACTTGTGCGTTGC
TCAACCCGTTGTTTGTGCTCAAGACAAAGCAACAGACGCAGCTGGTTCGC
GCCAATCCGCACGCGCCGCTCAAGTATACGGGCTTGCTCTCGTCGTTTCG
CGTCGTGGTGTCGGAGCAGGGCTTGCGTGGCTTGTACGTGGGCACCTTGG
CCGCCATGGCCGGCTTTCCGGGCGCCATGATTCAGATGCCGTTGTATGAG
TATCTCAAGACCGCTGGTGGCCAACACACCGATCCGTCGCCACTGCGAGT
GGCCGTGTCCAGTGCGTGCTCCGCCTCCACCGTGGGCATTGCCATGTACC
CCATCGAAGTCGTTCGTCTGCGTTTGCAGGCGCAGAATCCGTCCGCACAC
CACTACTCGGGCATTTTCGATGCCTTCAAGAAGATATTCTGCTCCGAAGG
CATCACTGCCTTTTACCGCGGTCTGGGCACGGGCCTAATACGATCACCGG
TGCTGCCCACTACTCCGCCGCAAGCTATCACCGTGTCGTACGCTCATTCT
GATTGCGCTCTGCCAGTGGTCTTTTGCCATCGTTCCATGTGTGTCTCCAC
AATATCTGAGCCAGGTTCTTGTGTGATGCTGTCACACATGTTCGCCATCA
ACCATGATCTCGAGTTGACTACCTGCTCTCGCGGGACTTGCAGCCCGGCG
CACTATTGA
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