Gcaud2686.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2686.t1
Unique NameGcaud2686.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length74
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_12_length_86746_cov_4.301944contigNODE_12_length_86746_cov_4.301944:5379..5759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMQ038CT
Preferred nameUBC17
PFAMsUQ_con
Max annot lvl2759|Eukaryota
KEGG rclassRC00064,RC00141
KEGG koko:K01446,ko:K10688,ko:K13963,ko:K19589,ko:K20182
KEGG ReactionR04112
KEGG Pathwayko04120,ko04138,ko05146,map04120,map04138,map05146
GOsGO:0000209,GO:0001101,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009719,GO:0009725,GO:0009739,GO:0009987,GO:0010033,GO:0010498,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0031625,GO:0032446,GO:0033993,GO:0036211,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044464,GO:0050896,GO:0051603,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901700
Evalue7.15e-16
EggNOG OGsCOG5078@1|root,KOG0427@2759|Eukaryota
EC2.1.1.297,2.3.2.25
Descriptionprotein polyubiquitination
COG categoryO
BRITEko00000,ko00001,ko01000,ko03012,ko04121,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2686Gcaud2686Gracilaria caudata M_176_S67 malegeneNODE_12_length_86746_cov_4.301944 5379..5759 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2686.t1Gcaud2686.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_12_length_86746_cov_4.301944 5379..5759 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2686.t1.start1Gcaud2686.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_12_length_86746_cov_4.301944 5379..5381 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2686.t1.CDS1Gcaud2686.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_12_length_86746_cov_4.301944 5379..5473 +
Gcaud2686.t1.CDS2Gcaud2686.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_12_length_86746_cov_4.301944 5633..5759 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2686.t1.exon1Gcaud2686.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_12_length_86746_cov_4.301944 5379..5473 +
Gcaud2686.t1.exon2Gcaud2686.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_12_length_86746_cov_4.301944 5633..5759 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2686.t1.intron1Gcaud2686.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_12_length_86746_cov_4.301944 5474..5632 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2686.t1.stop1Gcaud2686.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_12_length_86746_cov_4.301944 5757..5759 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2686.t1 ID=Gcaud2686.t1|Name=Gcaud2686.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=74bp
MSVSETDRVDEWLVTVTGAAGSVYENEKYTLRIVSMLSSATKKGVPPDND
TYIRNCQGRSPKQTRWMFHDDHV*
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spliced messenger RNA

>Gcaud2686.t1 ID=Gcaud2686.t1|Name=Gcaud2686.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=222bp|location=Sequence derived from alignment at NODE_12_length_86746_cov_4.301944:5379..5759+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGTTTCCGAGACTGATCGAGTGGATGAGTGGCTTGTTACCGTCAC
CGGCGCTGCCGGTAGCGTCTACGAGAATGAGAAGTACACATTGCGTATCG
TCAGCATGTTGAGCAGCGCCACAAAGAAAGGCGTCCCCCCCGATAACGAC
ACCTATATTCGAAACTGTCAAGGAAGGTCACCCAAGCAAACACGGTGGAT
GTTCCACGATGACCATGTTTGA
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protein sequence of Gcaud2686.t1

>Gcaud2686.t1 ID=Gcaud2686.t1|Name=Gcaud2686.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=74bp
MSVSETDRVDEWLVTVTGAAGSVYENEKYTLRIVSMLSSATKKGVPPDND
TYIRNCQGRSPKQTRWMFHDDHV*
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mRNA from alignment at NODE_12_length_86746_cov_4.301944:5379..5759+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2686.t1 ID=Gcaud2686.t1|Name=Gcaud2686.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=381bp|location=Sequence derived from alignment at NODE_12_length_86746_cov_4.301944:5379..5759+ (Gracilaria caudata M_176_S67 male)
ATGTCCGTTTCCGAGACTGATCGAGTGGATGAGTGGCTTGTTACCGTCAC
CGGCGCTGCCGGTAGCGTCTACGAGAATGAGAAGTACACATTGCGGTTCG
TTTTCCCCGCCGACTATCCCATGGAAGCTCCTGAAGTCGTATTTTTACAG
CCTACCCCGCGCCATCCGCATGTGTACTCAAATGGTCACATTTGCCTCAA
CGTGCTCTACGACGGTTGGAGTCCTGCGCTCACCGTCACCTCCGTTTGTC
TCAGTATCGTCAGCATGTTGAGCAGCGCCACAAAGAAAGGCGTCCCCCCC
GATAACGACACCTATATTCGAAACTGTCAAGGAAGGTCACCCAAGCAAAC
ACGGTGGATGTTCCACGATGACCATGTTTGA
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Coding sequence (CDS) from alignment at NODE_12_length_86746_cov_4.301944:5379..5759+

>Gcaud2686.t1 ID=Gcaud2686.t1|Name=Gcaud2686.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=222bp|location=Sequence derived from alignment at NODE_12_length_86746_cov_4.301944:5379..5759+ (Gracilaria caudata M_176_S67 male)
ATGTCCGTTTCCGAGACTGATCGAGTGGATGAGTGGCTTGTTACCGTCAC
CGGCGCTGCCGGTAGCGTCTACGAGAATGAGAAGTACACATTGCGTATCG
TCAGCATGTTGAGCAGCGCCACAAAGAAAGGCGTCCCCCCCGATAACGAC
ACCTATATTCGAAACTGTCAAGGAAGGTCACCCAAGCAAACACGGTGGAT
GTTCCACGATGACCATGTTTGA
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