Gcaud2684.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2684.t1
Unique NameGcaud2684.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length185
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_12_length_86746_cov_4.301944contigNODE_12_length_86746_cov_4.301944:2421..3142 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog40483.S8EQQ7
PFAMsProteasom_Rpn13,RPN13_C
Max annot lvl4751|Fungi
KEGG koko:K06691
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
GOsGO:0000502,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005838,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007346,GO:0008047,GO:0008150,GO:0008152,GO:0008541,GO:0009056,GO:0009057,GO:0009893,GO:0009896,GO:0009987,GO:0010498,GO:0010564,GO:0010604,GO:0010638,GO:0010950,GO:0010952,GO:0010965,GO:0016504,GO:0019222,GO:0019538,GO:0019941,GO:0022624,GO:0030071,GO:0030162,GO:0030163,GO:0030234,GO:0031323,GO:0031325,GO:0031331,GO:0032182,GO:0032268,GO:0032270,GO:0032436,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0043085,GO:0043130,GO:0043161,GO:0043170,GO:0043632,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0044877,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0052547,GO:0052548,GO:0060255,GO:0061133,GO:0061134,GO:0061135,GO:0062033,GO:0065007,GO:0065009,GO:0070628,GO:0071704,GO:0080090,GO:0090068,GO:0098772,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:2001252
Evalue4.26e-23
EggNOG OGsKOG3037@1|root,KOG3037@2759|Eukaryota,38DV1@33154|Opisthokonta,3NZRW@4751|Fungi,3V1FW@5204|Basidiomycota,2250S@155619|Agaricomycetes,3H156@355688|Agaricomycetes incertae sedis
DescriptionAdhesion regulating molecule
COG categoryS
BRITEko00000,ko00001,ko00002,ko03051
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2684Gcaud2684Gracilaria caudata M_176_S67 malegeneNODE_12_length_86746_cov_4.301944 2421..3142 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2684.t1Gcaud2684.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_12_length_86746_cov_4.301944 2421..3142 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2684.t1.stop1Gcaud2684.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_12_length_86746_cov_4.301944 2421..2423 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2684.t1.CDS1Gcaud2684.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_12_length_86746_cov_4.301944 2421..2467 -
Gcaud2684.t1.CDS2Gcaud2684.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_12_length_86746_cov_4.301944 2535..2622 -
Gcaud2684.t1.CDS3Gcaud2684.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_12_length_86746_cov_4.301944 2723..3142 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2684.t1.exon1Gcaud2684.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_12_length_86746_cov_4.301944 2421..2467 -
Gcaud2684.t1.exon2Gcaud2684.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_12_length_86746_cov_4.301944 2535..2622 -
Gcaud2684.t1.exon3Gcaud2684.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_12_length_86746_cov_4.301944 2723..3142 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2684.t1.intron1Gcaud2684.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_12_length_86746_cov_4.301944 2468..2534 -
Gcaud2684.t1.intron2Gcaud2684.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_12_length_86746_cov_4.301944 2623..2722 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2684.t1.start1Gcaud2684.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_12_length_86746_cov_4.301944 3140..3142 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2684.t1 ID=Gcaud2684.t1|Name=Gcaud2684.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=185bp
MDMDGIIQSDGMGGLLPSDPQPHVSFRAGILNRDPATNRVEADPRKGMFQ
IVTTNDGLMHLQWRPRNSSAVEQDLILFNGDAEVKQVTSCSPSARVYVLK
WKEGDTRMFFWMQGSDASQDASNVAAVNRLLESGPEGIQQINLDTLRSPQ
TPPQPVTQNQPGNDPATSPPRYKAQPSRSVEKKF*
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spliced messenger RNA

>Gcaud2684.t1 ID=Gcaud2684.t1|Name=Gcaud2684.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=555bp|location=Sequence derived from alignment at NODE_12_length_86746_cov_4.301944:2421..3142- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACATGGACGGCATAATTCAGTCTGATGGAATGGGGGGACTCCTTCC
GTCCGACCCACAACCTCATGTATCCTTTCGCGCTGGTATCCTTAACCGCG
ATCCTGCAACCAATCGCGTCGAAGCCGATCCTCGAAAAGGGATGTTTCAA
ATCGTCACCACCAACGACGGTTTGATGCACCTTCAATGGCGCCCCCGGAA
CTCGAGTGCGGTGGAACAAGACCTCATTCTGTTCAACGGCGATGCAGAAG
TGAAGCAAGTTACCAGCTGTTCACCTTCCGCAAGGGTGTATGTGCTCAAA
TGGAAAGAGGGCGACACTCGAATGTTTTTCTGGATGCAGGGAAGCGACGC
ATCTCAAGACGCCTCTAACGTTGCGGCGGTCAATCGTTTATTGGAAAGCG
GTCCTGAGGGTATTCAACAGATCAACCTGGACACTCTCCGTTCTCCGCAA
ACACCCCCACAACCTGTTACTCAAAACCAACCCGGCAATGACCCTGCCAC
AAGTCCTCCACGATACAAGGCGCAACCCTCGCGCAGCGTAGAGAAGAAAT
TCTGA
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protein sequence of Gcaud2684.t1

>Gcaud2684.t1 ID=Gcaud2684.t1|Name=Gcaud2684.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=185bp
MDMDGIIQSDGMGGLLPSDPQPHVSFRAGILNRDPATNRVEADPRKGMFQ
IVTTNDGLMHLQWRPRNSSAVEQDLILFNGDAEVKQVTSCSPSARVYVLK
WKEGDTRMFFWMQGSDASQDASNVAAVNRLLESGPEGIQQINLDTLRSPQ
TPPQPVTQNQPGNDPATSPPRYKAQPSRSVEKKF*
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mRNA from alignment at NODE_12_length_86746_cov_4.301944:2421..3142-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2684.t1 ID=Gcaud2684.t1|Name=Gcaud2684.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=722bp|location=Sequence derived from alignment at NODE_12_length_86746_cov_4.301944:2421..3142- (Gracilaria caudata M_176_S67 male)
ATGGACATGGACGGCATAATTCAGTCTGATGGAATGGGGGGACTCCTTCC
GTCCGACCCACAACCTCATGTATCCTTTCGCGCTGGTATCCTTAACCGCG
ATCCTGCAACCAATCGCGTCGAAGCCGATCCTCGAAAAGGGATGTTTCAA
ATCGTCACCACCAACGACGGTTTGATGCACCTTCAATGGCGCCCCCGGAA
CTCGAGTGCGGTGGAACAAGACCTCATTCTGTTCAACGGCGATGCAGAAG
TGAAGCAAGTTACCAGCTGTTCACCTTCCGCAAGGGTGTATGTGCTCAAA
TGGAAAGAGGGCGACACTCGAATGTTTTTCTGGATGCAGGGAAGCGACGC
ATCTCAAGACGCCTCTAACGTTGCGGCGGTCAATCGTTTATTGGAAAGCG
GTCCTGAGGGTATTCAACAGGTATAGTTTGCTCTAACAATACCACTACAC
AGTTGTACGGCAACGGTGTTGAATAAATTCGCTACTAATCACACGTCTGC
TCTGTCTGCTCAATGTGTAGATCAACCTGGACACTCTCCGTTCTCCGCAA
ACACCCCCACAACCTGTTACTCAAAACCAACCCGGCAATGACCCTGCCAC
AAGTCCTCGTCCGACACCCAGAGAACCGCCTTCAACTGTTGGTCTGGATC
CAATTAACTTAGAACGCTATCACAGCACGATACAAGGCGCAACCCTCGCG
CAGCGTAGAGAAGAAATTCTGA
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Coding sequence (CDS) from alignment at NODE_12_length_86746_cov_4.301944:2421..3142-

>Gcaud2684.t1 ID=Gcaud2684.t1|Name=Gcaud2684.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=555bp|location=Sequence derived from alignment at NODE_12_length_86746_cov_4.301944:2421..3142- (Gracilaria caudata M_176_S67 male)
ATGGACATGGACGGCATAATTCAGTCTGATGGAATGGGGGGACTCCTTCC
GTCCGACCCACAACCTCATGTATCCTTTCGCGCTGGTATCCTTAACCGCG
ATCCTGCAACCAATCGCGTCGAAGCCGATCCTCGAAAAGGGATGTTTCAA
ATCGTCACCACCAACGACGGTTTGATGCACCTTCAATGGCGCCCCCGGAA
CTCGAGTGCGGTGGAACAAGACCTCATTCTGTTCAACGGCGATGCAGAAG
TGAAGCAAGTTACCAGCTGTTCACCTTCCGCAAGGGTGTATGTGCTCAAA
TGGAAAGAGGGCGACACTCGAATGTTTTTCTGGATGCAGGGAAGCGACGC
ATCTCAAGACGCCTCTAACGTTGCGGCGGTCAATCGTTTATTGGAAAGCG
GTCCTGAGGGTATTCAACAGATCAACCTGGACACTCTCCGTTCTCCGCAA
ACACCCCCACAACCTGTTACTCAAAACCAACCCGGCAATGACCCTGCCAC
AAGTCCTCCACGATACAAGGCGCAACCCTCGCGCAGCGTAGAGAAGAAAT
TCTGA
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