Gcaud2666.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2666.t1
Unique Name	Gcaud2666.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	329

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_558_length_22134_cov_4.093136	contig	NODE_558_length_22134_cov_4.093136:14544..15530 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2666	Gcaud2666	Gracilaria caudata M_176_S67 male	gene	NODE_558_length_22134_cov_4.093136 14544..15530 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2666.t1.stop1	Gcaud2666.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_558_length_22134_cov_4.093136 14544..14546 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2666.t1.CDS1	Gcaud2666.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_558_length_22134_cov_4.093136 14544..15530 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2666.t1.exon1	Gcaud2666.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_558_length_22134_cov_4.093136 14544..15530 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2666.t1.start1	Gcaud2666.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_558_length_22134_cov_4.093136 15528..15530 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2666.t1	Gcaud2666.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_558_length_22134_cov_4.093136 14544..15530 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_558_length_22134_cov_4.093136:14544..15530-
coding sequence from alignment at NODE_558_length_22134_cov_4.093136:14544..15530-

mRNA sequence

>Gcaud2666.t1 ID=Gcaud2666.t1|Name=Gcaud2666.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=329bp
MDSQLKEKGRNSNLVLLKKATARKISTRVNVRIDFDEGRHWWKGDFRFWE
NVCGFAAKLSEDNKGKNIFDAMRRYPSSVLVFNGLKTVFGRYMMVGTSRI
RRLPRSKNAMSMFSPVGSCNEGARGWFELDAYGRLQEMVVHLTAVAEYVL
RSVHNFYSQNTTTQGDWNRLSFVVDEHVVETALDHQTVLKLRNVVDVGDL
AEYKACSCLYRAVAVAHSSVIEGAATAGRRLGKKRSNGLPRRRVHQCMLR
RPLHEVLDTFVEKITDAVQEIVTDDLDASGFYLQMTKLLRKVERIYMEIG
ADSFQDTSDHQGPSLPPKGMYVFKALKK*

spliced messenger RNA

>Gcaud2666.t1 ID=Gcaud2666.t1|Name=Gcaud2666.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=987bp|location=Sequence derived from alignment at NODE_558_length_22134_cov_4.093136:14544..15530- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATAGCCAATTAAAAGAAAAAGGACGCAACTCAAACTTGGTGCTGCT
TAAGAAAGCAACAGCTAGGAAGATCTCAACAAGGGTCAACGTCCGAATTG
ACTTCGACGAGGGTCGTCATTGGTGGAAGGGGGACTTCCGTTTCTGGGAG
AATGTGTGTGGATTTGCTGCCAAACTATCGGAAGATAATAAGGGGAAGAA
CATATTTGACGCGATGCGGAGATATCCGTCGTCAGTTCTTGTCTTCAATG
GGCTAAAAACAGTGTTCGGAAGGTACATGATGGTTGGCACAAGTCGAATA
CGGCGACTGCCTCGTTCAAAAAACGCGATGTCCATGTTCAGTCCGGTCGG
GAGCTGCAACGAGGGTGCCAGAGGATGGTTTGAATTAGATGCCTACGGGA
GACTGCAAGAAATGGTTGTTCACTTGACTGCTGTAGCAGAATACGTGCTT
CGTTCTGTTCATAATTTCTATTCTCAGAATACTACAACGCAAGGAGATTG
GAATAGGCTCTCATTCGTCGTTGATGAACACGTCGTAGAAACAGCTTTGG
ATCACCAAACGGTGTTGAAACTGCGAAATGTAGTAGATGTTGGTGATCTG
GCGGAATACAAGGCTTGCTCCTGCCTTTATAGGGCGGTGGCTGTTGCTCA
CAGCTCGGTTATTGAAGGCGCAGCAACCGCAGGCAGGCGGCTAGGAAAGA
AACGAAGCAATGGTTTACCTCGACGAAGAGTTCACCAGTGTATGCTCAGA
AGACCATTGCATGAGGTACTGGACACGTTCGTTGAGAAGATAACTGACGC
TGTCCAAGAGATCGTAACAGATGACCTGGATGCGAGCGGCTTTTACTTGC
AAATGACCAAACTGCTTAGAAAGGTGGAACGAATTTATATGGAGATCGGA
GCAGATTCATTTCAGGACACATCTGATCACCAGGGACCCTCTCTTCCACC
GAAGGGGATGTATGTCTTTAAGGCACTGAAAAAGTGA

protein sequence of Gcaud2666.t1

>Gcaud2666.t1 ID=Gcaud2666.t1|Name=Gcaud2666.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=329bp
MDSQLKEKGRNSNLVLLKKATARKISTRVNVRIDFDEGRHWWKGDFRFWE
NVCGFAAKLSEDNKGKNIFDAMRRYPSSVLVFNGLKTVFGRYMMVGTSRI
RRLPRSKNAMSMFSPVGSCNEGARGWFELDAYGRLQEMVVHLTAVAEYVL
RSVHNFYSQNTTTQGDWNRLSFVVDEHVVETALDHQTVLKLRNVVDVGDL
AEYKACSCLYRAVAVAHSSVIEGAATAGRRLGKKRSNGLPRRRVHQCMLR
RPLHEVLDTFVEKITDAVQEIVTDDLDASGFYLQMTKLLRKVERIYMEIG
ADSFQDTSDHQGPSLPPKGMYVFKALKK*

mRNA from alignment at NODE_558_length_22134_cov_4.093136:14544..15530-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2666.t1 ID=Gcaud2666.t1|Name=Gcaud2666.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=987bp|location=Sequence derived from alignment at NODE_558_length_22134_cov_4.093136:14544..15530- (Gracilaria caudata M_176_S67 male)
ATGGATAGCCAATTAAAAGAAAAAGGACGCAACTCAAACTTGGTGCTGCT
TAAGAAAGCAACAGCTAGGAAGATCTCAACAAGGGTCAACGTCCGAATTG
ACTTCGACGAGGGTCGTCATTGGTGGAAGGGGGACTTCCGTTTCTGGGAG
AATGTGTGTGGATTTGCTGCCAAACTATCGGAAGATAATAAGGGGAAGAA
CATATTTGACGCGATGCGGAGATATCCGTCGTCAGTTCTTGTCTTCAATG
GGCTAAAAACAGTGTTCGGAAGGTACATGATGGTTGGCACAAGTCGAATA
CGGCGACTGCCTCGTTCAAAAAACGCGATGTCCATGTTCAGTCCGGTCGG
GAGCTGCAACGAGGGTGCCAGAGGATGGTTTGAATTAGATGCCTACGGGA
GACTGCAAGAAATGGTTGTTCACTTGACTGCTGTAGCAGAATACGTGCTT
CGTTCTGTTCATAATTTCTATTCTCAGAATACTACAACGCAAGGAGATTG
GAATAGGCTCTCATTCGTCGTTGATGAACACGTCGTAGAAACAGCTTTGG
ATCACCAAACGGTGTTGAAACTGCGAAATGTAGTAGATGTTGGTGATCTG
GCGGAATACAAGGCTTGCTCCTGCCTTTATAGGGCGGTGGCTGTTGCTCA
CAGCTCGGTTATTGAAGGCGCAGCAACCGCAGGCAGGCGGCTAGGAAAGA
AACGAAGCAATGGTTTACCTCGACGAAGAGTTCACCAGTGTATGCTCAGA
AGACCATTGCATGAGGTACTGGACACGTTCGTTGAGAAGATAACTGACGC
TGTCCAAGAGATCGTAACAGATGACCTGGATGCGAGCGGCTTTTACTTGC
AAATGACCAAACTGCTTAGAAAGGTGGAACGAATTTATATGGAGATCGGA
GCAGATTCATTTCAGGACACATCTGATCACCAGGGACCCTCTCTTCCACC
GAAGGGGATGTATGTCTTTAAGGCACTGAAAAAGTGA

Coding sequence (CDS) from alignment at NODE_558_length_22134_cov_4.093136:14544..15530-

>Gcaud2666.t1 ID=Gcaud2666.t1|Name=Gcaud2666.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=987bp|location=Sequence derived from alignment at NODE_558_length_22134_cov_4.093136:14544..15530- (Gracilaria caudata M_176_S67 male)
ATGGATAGCCAATTAAAAGAAAAAGGACGCAACTCAAACTTGGTGCTGCT
TAAGAAAGCAACAGCTAGGAAGATCTCAACAAGGGTCAACGTCCGAATTG
ACTTCGACGAGGGTCGTCATTGGTGGAAGGGGGACTTCCGTTTCTGGGAG
AATGTGTGTGGATTTGCTGCCAAACTATCGGAAGATAATAAGGGGAAGAA
CATATTTGACGCGATGCGGAGATATCCGTCGTCAGTTCTTGTCTTCAATG
GGCTAAAAACAGTGTTCGGAAGGTACATGATGGTTGGCACAAGTCGAATA
CGGCGACTGCCTCGTTCAAAAAACGCGATGTCCATGTTCAGTCCGGTCGG
GAGCTGCAACGAGGGTGCCAGAGGATGGTTTGAATTAGATGCCTACGGGA
GACTGCAAGAAATGGTTGTTCACTTGACTGCTGTAGCAGAATACGTGCTT
CGTTCTGTTCATAATTTCTATTCTCAGAATACTACAACGCAAGGAGATTG
GAATAGGCTCTCATTCGTCGTTGATGAACACGTCGTAGAAACAGCTTTGG
ATCACCAAACGGTGTTGAAACTGCGAAATGTAGTAGATGTTGGTGATCTG
GCGGAATACAAGGCTTGCTCCTGCCTTTATAGGGCGGTGGCTGTTGCTCA
CAGCTCGGTTATTGAAGGCGCAGCAACCGCAGGCAGGCGGCTAGGAAAGA
AACGAAGCAATGGTTTACCTCGACGAAGAGTTCACCAGTGTATGCTCAGA
AGACCATTGCATGAGGTACTGGACACGTTCGTTGAGAAGATAACTGACGC
TGTCCAAGAGATCGTAACAGATGACCTGGATGCGAGCGGCTTTTACTTGC
AAATGACCAAACTGCTTAGAAAGGTGGAACGAATTTATATGGAGATCGGA
GCAGATTCATTTCAGGACACATCTGATCACCAGGGACCCTCTCTTCCACC
GAAGGGGATGTATGTCTTTAAGGCACTGAAAAAGTGA