Gcaud2665.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2665.t1
Unique Name	Gcaud2665.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	559

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_558_length_22134_cov_4.093136	contig	NODE_558_length_22134_cov_4.093136:12261..13937 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2665	Gcaud2665	Gracilaria caudata M_176_S67 male	gene	NODE_558_length_22134_cov_4.093136 12261..13937 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2665.t1.start1	Gcaud2665.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_558_length_22134_cov_4.093136 12261..12263 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2665.t1.CDS1	Gcaud2665.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_558_length_22134_cov_4.093136 12261..13937 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2665.t1.exon1	Gcaud2665.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_558_length_22134_cov_4.093136 12261..13937 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2665.t1.stop1	Gcaud2665.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_558_length_22134_cov_4.093136 13935..13937 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2665.t1	Gcaud2665.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_558_length_22134_cov_4.093136 12261..13937 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_558_length_22134_cov_4.093136:12261..13937+
coding sequence from alignment at NODE_558_length_22134_cov_4.093136:12261..13937+

mRNA sequence

>Gcaud2665.t1 ID=Gcaud2665.t1|Name=Gcaud2665.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=559bp
MIPEAKISRRARSSQVSFITPCLLSPSSRSTFNGQYPNVALKRNFVSHKL
QRNTFQKPNVFCLAAKPNHDSRLRSPLRESPSAVNSLKNVFIAFTAGLAV
LLPRQVIAKQSVITITDQVPNFTLPSQEEALRRDNSQQSILVKTLNGAKK
VAPAVLITGASLWALNAVYKRAQQQRLRDFQEQLRSSSSEAFGSSSLFQG
NSVSDSLRASTKPPQKQNRFKFRNRSDSQSEGQDMSSQVKLEIFQAKDKA
EAEEAENKVYEGIEDAVPTSALERAIDEYIAGDFSKDPEARKTALTEVSQ
ARQASGLSERAFRSVAEAYLSRTISANLDRAIASLSFDESESLRNLCSAV
KIIDDAEDLDKSLKLNYNGIHRGNDAEKEDLYRRYAVHCFTDQQQLEVEI
LRLQKLQNLLKIDQRRSEALMADVSKVMFQVAVSAAMMDGEGKDANMDSV
KGLYESFSKLVDEESAESITSEVAVMRIMYALQMLLQQEGALKDVEGFGK
MCQELGVDIDELISRVGVLEKTMGADATQFVDELREIVKTAGEDYIDSNQ
GQKTPASE*

spliced messenger RNA

>Gcaud2665.t1 ID=Gcaud2665.t1|Name=Gcaud2665.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1677bp|location=Sequence derived from alignment at NODE_558_length_22134_cov_4.093136:12261..13937+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCCAGAAGCCAAAATTTCAAGGAGAGCGCGCTCATCACAGGTTTC
CTTCATCACACCATGCTTGTTATCTCCCTCAAGTCGCTCTACATTTAATG
GTCAATACCCAAATGTTGCGCTTAAACGTAATTTCGTATCGCATAAGCTC
CAGCGCAATACCTTTCAAAAGCCAAATGTCTTTTGCTTGGCAGCAAAACC
CAATCACGATTCCCGTTTGCGTTCCCCACTGCGTGAGTCTCCTTCAGCAG
TCAATTCTCTCAAGAACGTGTTCATTGCTTTCACAGCTGGGCTAGCTGTT
CTCTTGCCACGACAGGTAATTGCGAAGCAATCAGTGATCACAATAACAGA
TCAGGTACCTAACTTTACATTACCGTCTCAAGAAGAGGCACTTCGAAGGG
ATAATTCTCAGCAAAGCATTCTTGTCAAAACTTTAAACGGTGCAAAAAAG
GTTGCTCCGGCCGTCCTCATTACTGGCGCTTCACTATGGGCTCTGAATGC
AGTGTACAAGAGAGCCCAGCAACAGCGTCTGCGTGATTTTCAAGAGCAGC
TCCGTTCATCTTCGTCCGAAGCTTTTGGCTCTAGTTCCCTTTTCCAAGGG
AACTCGGTTAGTGATAGCCTCCGGGCATCAACCAAACCACCGCAGAAACA
GAATCGCTTCAAGTTCCGAAATCGGTCAGATAGCCAATCCGAAGGGCAGG
ATATGTCGTCACAAGTGAAACTTGAAATATTCCAAGCAAAAGACAAAGCG
GAGGCCGAAGAAGCTGAGAATAAAGTCTACGAAGGAATTGAAGACGCAGT
TCCAACATCAGCGCTAGAGCGTGCAATTGATGAATACATAGCAGGCGACT
TTTCAAAAGATCCTGAAGCAAGAAAGACCGCTCTAACCGAAGTTTCACAG
GCGCGTCAGGCAAGTGGTCTGTCAGAAAGGGCCTTCAGATCAGTCGCAGA
AGCTTATCTTTCACGCACAATATCCGCCAATCTTGATCGCGCTATAGCAA
GCCTCAGCTTTGACGAATCCGAGAGTTTACGCAATTTGTGCTCCGCTGTT
AAGATCATTGACGATGCGGAAGACCTTGACAAATCGTTGAAGTTGAACTA
CAATGGTATTCACCGTGGAAACGACGCTGAGAAGGAAGACTTGTATCGTC
GTTATGCAGTGCATTGCTTCACAGACCAGCAGCAATTGGAAGTTGAGATC
CTAAGATTGCAGAAATTGCAAAACCTACTAAAGATCGACCAACGTCGCAG
CGAAGCATTGATGGCTGATGTCTCCAAAGTAATGTTCCAAGTCGCTGTCA
GTGCTGCTATGATGGACGGTGAAGGAAAGGATGCCAACATGGATTCAGTA
AAAGGGCTATACGAGTCCTTTAGCAAACTTGTAGACGAAGAGTCAGCAGA
ATCCATAACCTCAGAAGTAGCTGTGATGCGCATCATGTACGCGTTGCAAA
TGTTATTGCAACAAGAAGGAGCACTTAAGGATGTGGAGGGTTTCGGCAAG
ATGTGTCAAGAACTTGGTGTAGATATCGATGAGCTCATAAGCCGAGTCGG
CGTTCTAGAGAAAACAATGGGTGCAGATGCCACCCAGTTCGTTGATGAGC
TTCGAGAAATTGTCAAGACGGCAGGGGAAGACTACATAGACAGCAACCAG
GGGCAAAAGACTCCAGCATCTGAATGA

protein sequence of Gcaud2665.t1

>Gcaud2665.t1 ID=Gcaud2665.t1|Name=Gcaud2665.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=559bp
MIPEAKISRRARSSQVSFITPCLLSPSSRSTFNGQYPNVALKRNFVSHKL
QRNTFQKPNVFCLAAKPNHDSRLRSPLRESPSAVNSLKNVFIAFTAGLAV
LLPRQVIAKQSVITITDQVPNFTLPSQEEALRRDNSQQSILVKTLNGAKK
VAPAVLITGASLWALNAVYKRAQQQRLRDFQEQLRSSSSEAFGSSSLFQG
NSVSDSLRASTKPPQKQNRFKFRNRSDSQSEGQDMSSQVKLEIFQAKDKA
EAEEAENKVYEGIEDAVPTSALERAIDEYIAGDFSKDPEARKTALTEVSQ
ARQASGLSERAFRSVAEAYLSRTISANLDRAIASLSFDESESLRNLCSAV
KIIDDAEDLDKSLKLNYNGIHRGNDAEKEDLYRRYAVHCFTDQQQLEVEI
LRLQKLQNLLKIDQRRSEALMADVSKVMFQVAVSAAMMDGEGKDANMDSV
KGLYESFSKLVDEESAESITSEVAVMRIMYALQMLLQQEGALKDVEGFGK
MCQELGVDIDELISRVGVLEKTMGADATQFVDELREIVKTAGEDYIDSNQ
GQKTPASE*

mRNA from alignment at NODE_558_length_22134_cov_4.093136:12261..13937+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2665.t1 ID=Gcaud2665.t1|Name=Gcaud2665.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1677bp|location=Sequence derived from alignment at NODE_558_length_22134_cov_4.093136:12261..13937+ (Gracilaria caudata M_176_S67 male)
ATGATTCCAGAAGCCAAAATTTCAAGGAGAGCGCGCTCATCACAGGTTTC
CTTCATCACACCATGCTTGTTATCTCCCTCAAGTCGCTCTACATTTAATG
GTCAATACCCAAATGTTGCGCTTAAACGTAATTTCGTATCGCATAAGCTC
CAGCGCAATACCTTTCAAAAGCCAAATGTCTTTTGCTTGGCAGCAAAACC
CAATCACGATTCCCGTTTGCGTTCCCCACTGCGTGAGTCTCCTTCAGCAG
TCAATTCTCTCAAGAACGTGTTCATTGCTTTCACAGCTGGGCTAGCTGTT
CTCTTGCCACGACAGGTAATTGCGAAGCAATCAGTGATCACAATAACAGA
TCAGGTACCTAACTTTACATTACCGTCTCAAGAAGAGGCACTTCGAAGGG
ATAATTCTCAGCAAAGCATTCTTGTCAAAACTTTAAACGGTGCAAAAAAG
GTTGCTCCGGCCGTCCTCATTACTGGCGCTTCACTATGGGCTCTGAATGC
AGTGTACAAGAGAGCCCAGCAACAGCGTCTGCGTGATTTTCAAGAGCAGC
TCCGTTCATCTTCGTCCGAAGCTTTTGGCTCTAGTTCCCTTTTCCAAGGG
AACTCGGTTAGTGATAGCCTCCGGGCATCAACCAAACCACCGCAGAAACA
GAATCGCTTCAAGTTCCGAAATCGGTCAGATAGCCAATCCGAAGGGCAGG
ATATGTCGTCACAAGTGAAACTTGAAATATTCCAAGCAAAAGACAAAGCG
GAGGCCGAAGAAGCTGAGAATAAAGTCTACGAAGGAATTGAAGACGCAGT
TCCAACATCAGCGCTAGAGCGTGCAATTGATGAATACATAGCAGGCGACT
TTTCAAAAGATCCTGAAGCAAGAAAGACCGCTCTAACCGAAGTTTCACAG
GCGCGTCAGGCAAGTGGTCTGTCAGAAAGGGCCTTCAGATCAGTCGCAGA
AGCTTATCTTTCACGCACAATATCCGCCAATCTTGATCGCGCTATAGCAA
GCCTCAGCTTTGACGAATCCGAGAGTTTACGCAATTTGTGCTCCGCTGTT
AAGATCATTGACGATGCGGAAGACCTTGACAAATCGTTGAAGTTGAACTA
CAATGGTATTCACCGTGGAAACGACGCTGAGAAGGAAGACTTGTATCGTC
GTTATGCAGTGCATTGCTTCACAGACCAGCAGCAATTGGAAGTTGAGATC
CTAAGATTGCAGAAATTGCAAAACCTACTAAAGATCGACCAACGTCGCAG
CGAAGCATTGATGGCTGATGTCTCCAAAGTAATGTTCCAAGTCGCTGTCA
GTGCTGCTATGATGGACGGTGAAGGAAAGGATGCCAACATGGATTCAGTA
AAAGGGCTATACGAGTCCTTTAGCAAACTTGTAGACGAAGAGTCAGCAGA
ATCCATAACCTCAGAAGTAGCTGTGATGCGCATCATGTACGCGTTGCAAA
TGTTATTGCAACAAGAAGGAGCACTTAAGGATGTGGAGGGTTTCGGCAAG
ATGTGTCAAGAACTTGGTGTAGATATCGATGAGCTCATAAGCCGAGTCGG
CGTTCTAGAGAAAACAATGGGTGCAGATGCCACCCAGTTCGTTGATGAGC
TTCGAGAAATTGTCAAGACGGCAGGGGAAGACTACATAGACAGCAACCAG
GGGCAAAAGACTCCAGCATCTGAATGA

Coding sequence (CDS) from alignment at NODE_558_length_22134_cov_4.093136:12261..13937+

>Gcaud2665.t1 ID=Gcaud2665.t1|Name=Gcaud2665.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1677bp|location=Sequence derived from alignment at NODE_558_length_22134_cov_4.093136:12261..13937+ (Gracilaria caudata M_176_S67 male)
ATGATTCCAGAAGCCAAAATTTCAAGGAGAGCGCGCTCATCACAGGTTTC
CTTCATCACACCATGCTTGTTATCTCCCTCAAGTCGCTCTACATTTAATG
GTCAATACCCAAATGTTGCGCTTAAACGTAATTTCGTATCGCATAAGCTC
CAGCGCAATACCTTTCAAAAGCCAAATGTCTTTTGCTTGGCAGCAAAACC
CAATCACGATTCCCGTTTGCGTTCCCCACTGCGTGAGTCTCCTTCAGCAG
TCAATTCTCTCAAGAACGTGTTCATTGCTTTCACAGCTGGGCTAGCTGTT
CTCTTGCCACGACAGGTAATTGCGAAGCAATCAGTGATCACAATAACAGA
TCAGGTACCTAACTTTACATTACCGTCTCAAGAAGAGGCACTTCGAAGGG
ATAATTCTCAGCAAAGCATTCTTGTCAAAACTTTAAACGGTGCAAAAAAG
GTTGCTCCGGCCGTCCTCATTACTGGCGCTTCACTATGGGCTCTGAATGC
AGTGTACAAGAGAGCCCAGCAACAGCGTCTGCGTGATTTTCAAGAGCAGC
TCCGTTCATCTTCGTCCGAAGCTTTTGGCTCTAGTTCCCTTTTCCAAGGG
AACTCGGTTAGTGATAGCCTCCGGGCATCAACCAAACCACCGCAGAAACA
GAATCGCTTCAAGTTCCGAAATCGGTCAGATAGCCAATCCGAAGGGCAGG
ATATGTCGTCACAAGTGAAACTTGAAATATTCCAAGCAAAAGACAAAGCG
GAGGCCGAAGAAGCTGAGAATAAAGTCTACGAAGGAATTGAAGACGCAGT
TCCAACATCAGCGCTAGAGCGTGCAATTGATGAATACATAGCAGGCGACT
TTTCAAAAGATCCTGAAGCAAGAAAGACCGCTCTAACCGAAGTTTCACAG
GCGCGTCAGGCAAGTGGTCTGTCAGAAAGGGCCTTCAGATCAGTCGCAGA
AGCTTATCTTTCACGCACAATATCCGCCAATCTTGATCGCGCTATAGCAA
GCCTCAGCTTTGACGAATCCGAGAGTTTACGCAATTTGTGCTCCGCTGTT
AAGATCATTGACGATGCGGAAGACCTTGACAAATCGTTGAAGTTGAACTA
CAATGGTATTCACCGTGGAAACGACGCTGAGAAGGAAGACTTGTATCGTC
GTTATGCAGTGCATTGCTTCACAGACCAGCAGCAATTGGAAGTTGAGATC
CTAAGATTGCAGAAATTGCAAAACCTACTAAAGATCGACCAACGTCGCAG
CGAAGCATTGATGGCTGATGTCTCCAAAGTAATGTTCCAAGTCGCTGTCA
GTGCTGCTATGATGGACGGTGAAGGAAAGGATGCCAACATGGATTCAGTA
AAAGGGCTATACGAGTCCTTTAGCAAACTTGTAGACGAAGAGTCAGCAGA
ATCCATAACCTCAGAAGTAGCTGTGATGCGCATCATGTACGCGTTGCAAA
TGTTATTGCAACAAGAAGGAGCACTTAAGGATGTGGAGGGTTTCGGCAAG
ATGTGTCAAGAACTTGGTGTAGATATCGATGAGCTCATAAGCCGAGTCGG
CGTTCTAGAGAAAACAATGGGTGCAGATGCCACCCAGTTCGTTGATGAGC
TTCGAGAAATTGTCAAGACGGCAGGGGAAGACTACATAGACAGCAACCAG
GGGCAAAAGACTCCAGCATCTGAATGA