Gcaud2662.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2662.t1
Unique NameGcaud2662.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length117
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_558_length_22134_cov_4.093136contigNODE_558_length_22134_cov_4.093136:8326..8752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1173029.JH980292_gene1288
Preferred namefkpA
PFAMsFKBP_C
Max annot lvl1117|Cyanobacteria
KEGG koko:K01802,ko:K03772
Evalue1.16e-41
EggNOG OGsCOG0545@1|root,COG0545@2|Bacteria,1G5T1@1117|Cyanobacteria,1HAQ3@1150|Oscillatoriales
EC5.2.1.8
DescriptionPFAM FKBP-type peptidyl-prolyl cis-trans isomerase
COG categoryO
BRITEko00000,ko01000,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2662Gcaud2662Gracilaria caudata M_176_S67 malegeneNODE_558_length_22134_cov_4.093136 8326..8752 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2662.t1Gcaud2662.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_558_length_22134_cov_4.093136 8326..8752 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2662.t1.start1Gcaud2662.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_558_length_22134_cov_4.093136 8326..8328 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2662.t1.CDS1Gcaud2662.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_558_length_22134_cov_4.093136 8326..8489 +
Gcaud2662.t1.CDS2Gcaud2662.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_558_length_22134_cov_4.093136 8566..8752 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2662.t1.exon1Gcaud2662.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_558_length_22134_cov_4.093136 8326..8489 +
Gcaud2662.t1.exon2Gcaud2662.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_558_length_22134_cov_4.093136 8566..8752 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2662.t1.intron1Gcaud2662.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_558_length_22134_cov_4.093136 8490..8565 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2662.t1.stop1Gcaud2662.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_558_length_22134_cov_4.093136 8750..8752 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2662.t1 ID=Gcaud2662.t1|Name=Gcaud2662.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=117bp
MASAAPQVQKEDVVVGTGAGFKSGDNLHVHYTLTLNSFDSAQVIDSSRKR
GRPFQYGYDTGSVIKGWDQGVEGMKVGGRRRLVIPSELGYGARGAGGVIP
PNATLYFDIELLKVGY*
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spliced messenger RNA

>Gcaud2662.t1 ID=Gcaud2662.t1|Name=Gcaud2662.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=351bp|location=Sequence derived from alignment at NODE_558_length_22134_cov_4.093136:8326..8752+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAGCGCAGCGCCGCAGGTACAGAAGGAGGACGTGGTGGTGGGCAC
GGGTGCGGGCTTCAAGTCCGGCGACAATCTGCACGTGCACTACACTCTGA
CGCTGAACAGCTTTGACAGCGCACAGGTGATCGACAGCTCGAGGAAGCGC
GGGCGGCCGTTCCAGTATGGGTACGACACGGGGTCGGTGATCAAGGGGTG
GGACCAGGGCGTGGAGGGTATGAAGGTGGGCGGGCGGCGCCGGCTGGTGA
TCCCGTCGGAGCTGGGGTACGGTGCGCGCGGCGCGGGCGGCGTGATCCCG
CCCAACGCCACGCTGTACTTCGACATCGAGCTGCTCAAGGTGGGCTATTA
G
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protein sequence of Gcaud2662.t1

>Gcaud2662.t1 ID=Gcaud2662.t1|Name=Gcaud2662.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=117bp
MASAAPQVQKEDVVVGTGAGFKSGDNLHVHYTLTLNSFDSAQVIDSSRKR
GRPFQYGYDTGSVIKGWDQGVEGMKVGGRRRLVIPSELGYGARGAGGVIP
PNATLYFDIELLKVGY*
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mRNA from alignment at NODE_558_length_22134_cov_4.093136:8326..8752+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2662.t1 ID=Gcaud2662.t1|Name=Gcaud2662.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=427bp|location=Sequence derived from alignment at NODE_558_length_22134_cov_4.093136:8326..8752+ (Gracilaria caudata M_176_S67 male)
ATGGCGAGCGCAGCGCCGCAGGTACAGAAGGAGGACGTGGTGGTGGGCAC
GGGTGCGGGCTTCAAGTCCGGCGACAATCTGCACGTGCACTACACTCTGA
CGCTGAACAGCTTTGACAGCGCACAGGTGATCGACAGCTCGAGGAAGCGC
GGGCGGCCGTTCCAGTAAGTTGAGAGCGCGCACTTGCGAGTTCTGCGCGT
GGGAGGACGAGCGAACTAACCGATTTTGGGACTGTGACAGGTATGGGTAC
GACACGGGGTCGGTGATCAAGGGGTGGGACCAGGGCGTGGAGGGTATGAA
GGTGGGCGGGCGGCGCCGGCTGGTGATCCCGTCGGAGCTGGGGTACGGTG
CGCGCGGCGCGGGCGGCGTGATCCCGCCCAACGCCACGCTGTACTTCGAC
ATCGAGCTGCTCAAGGTGGGCTATTAG
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Coding sequence (CDS) from alignment at NODE_558_length_22134_cov_4.093136:8326..8752+

>Gcaud2662.t1 ID=Gcaud2662.t1|Name=Gcaud2662.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=351bp|location=Sequence derived from alignment at NODE_558_length_22134_cov_4.093136:8326..8752+ (Gracilaria caudata M_176_S67 male)
ATGGCGAGCGCAGCGCCGCAGGTACAGAAGGAGGACGTGGTGGTGGGCAC
GGGTGCGGGCTTCAAGTCCGGCGACAATCTGCACGTGCACTACACTCTGA
CGCTGAACAGCTTTGACAGCGCACAGGTGATCGACAGCTCGAGGAAGCGC
GGGCGGCCGTTCCAGTATGGGTACGACACGGGGTCGGTGATCAAGGGGTG
GGACCAGGGCGTGGAGGGTATGAAGGTGGGCGGGCGGCGCCGGCTGGTGA
TCCCGTCGGAGCTGGGGTACGGTGCGCGCGGCGCGGGCGGCGTGATCCCG
CCCAACGCCACGCTGTACTTCGACATCGAGCTGCTCAAGGTGGGCTATTA
G
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