Gcaud2660.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2660.t1
Unique NameGcaud2660.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length420
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_558_length_22134_cov_4.093136contigNODE_558_length_22134_cov_4.093136:2919..4178 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMT110CT
PFAMsATP-sulfurylase,PUA_2
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00078,RC02809,RC02889
KEGG koko:K00958,ko:K13811
KEGG ReactionR00509,R00529,R04928,R04929
KEGG Pathwayko00230,ko00261,ko00450,ko00920,ko01100,ko01120,ko01130,map00230,map00261,map00450,map00920,map01100,map01120,map01130
KEGG ModuleM00176,M00596
Evalue2.9e-158
EggNOG OGsCOG2046@1|root,KOG0636@2759|Eukaryota
EC2.7.1.25,2.7.7.4
Descriptionsulfate adenylyltransferase (ATP) activity
COG categoryP
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2660Gcaud2660Gracilaria caudata M_176_S67 malegeneNODE_558_length_22134_cov_4.093136 2919..4178 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2660.t1.stop1Gcaud2660.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_558_length_22134_cov_4.093136 2919..2921 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2660.t1.CDS1Gcaud2660.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_558_length_22134_cov_4.093136 2919..4178 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2660.t1.exon1Gcaud2660.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_558_length_22134_cov_4.093136 2919..4178 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2660.t1.start1Gcaud2660.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_558_length_22134_cov_4.093136 4176..4178 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2660.t1Gcaud2660.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_558_length_22134_cov_4.093136 2919..4178 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2660.t1 ID=Gcaud2660.t1|Name=Gcaud2660.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=420bp
MATISPVHGGGELVDRIVNEIPDAETLPKIVVNDVDMTSLYRIADGTLSP
LTGPMVKDDYDSVLTSKCIVRNGAKWAWTIPICLPVTAEEARVSPEGAKV
ALYSESSGKVFGVMEVSSLFEWDKAAFIKAVYGTERVDHPGARLWMTDDR
STMIGGEISLLPYEDSREFKDRIFSPKKMRAYLEQKGFGASIAFQTRNPL
HRAHEYALVYGAESLLKALGDEKKIGVFLNPLVGQLKGDDVPAKTRMETY
AKLIDEGYLGEGDMDEELWKSKSQNLKEQVTLAGLDMRMFYGGPSEAVMH
AIYRQNLGLTNFIIGRKHADAPFDDKSPIWGDFDAQEVFSNLGGQLSIKT
VNVGFAAYFEELGRVGLVADNKDKKSVSISGTKVREMLNRGEKPDDRVMR
PTTAEILIQYYQTKNAMKA*
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spliced messenger RNA

>Gcaud2660.t1 ID=Gcaud2660.t1|Name=Gcaud2660.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1260bp|location=Sequence derived from alignment at NODE_558_length_22134_cov_4.093136:2919..4178- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTACCATTTCCCCAGTGCACGGAGGCGGTGAGTTGGTTGACCGTAT
CGTCAACGAGATCCCAGACGCTGAAACCCTCCCCAAGATTGTTGTCAATG
ATGTGGACATGACCTCCCTCTATCGAATTGCCGATGGCACCCTCTCCCCA
CTGACAGGCCCCATGGTCAAGGACGACTATGACTCAGTGCTTACCTCTAA
GTGCATTGTGCGCAACGGCGCTAAGTGGGCGTGGACCATCCCGATCTGCT
TGCCAGTCACTGCTGAGGAGGCGCGAGTCTCCCCCGAAGGCGCCAAGGTT
GCTCTGTACTCAGAGTCAAGCGGCAAGGTCTTTGGTGTCATGGAAGTGTC
CTCGCTCTTTGAATGGGACAAGGCTGCCTTCATCAAGGCGGTGTACGGCA
CTGAGCGTGTGGACCACCCTGGTGCCCGTCTGTGGATGACCGACGATCGC
TCTACTATGATTGGTGGCGAGATTTCGCTTCTGCCTTATGAGGACTCCAG
AGAATTCAAGGATCGTATCTTCTCCCCGAAGAAGATGAGGGCCTACCTGG
AGCAGAAGGGCTTCGGTGCTTCTATTGCGTTCCAGACACGCAACCCGCTT
CACAGGGCACACGAGTATGCGCTCGTATACGGCGCCGAGTCCCTGCTCAA
GGCCCTGGGTGATGAGAAAAAGATTGGTGTATTCCTGAACCCGTTGGTTG
GTCAGCTCAAGGGCGATGACGTCCCTGCGAAGACCAGGATGGAAACCTAT
GCTAAACTCATTGATGAGGGTTATTTGGGAGAGGGAGATATGGACGAGGA
ACTGTGGAAGTCCAAGAGCCAGAACCTTAAGGAACAGGTTACCTTGGCTG
GATTGGACATGCGAATGTTCTATGGCGGCCCCTCGGAGGCTGTCATGCAT
GCCATCTACCGTCAGAACCTTGGCTTGACCAACTTTATCATTGGCCGCAA
GCACGCCGACGCTCCTTTCGATGACAAGTCGCCGATTTGGGGCGACTTTG
ATGCGCAGGAGGTGTTCTCCAACTTGGGCGGACAGTTGTCGATCAAGACT
GTGAATGTCGGTTTCGCCGCATACTTTGAGGAACTGGGTCGCGTCGGACT
CGTGGCTGATAATAAGGACAAGAAATCGGTGAGCATCTCCGGCACTAAGG
TGCGTGAGATGTTGAACCGTGGCGAGAAGCCAGACGATCGCGTGATGCGT
CCGACCACCGCGGAAATCCTGATCCAATACTACCAGACGAAGAACGCGAT
GAAGGCGTGA
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protein sequence of Gcaud2660.t1

>Gcaud2660.t1 ID=Gcaud2660.t1|Name=Gcaud2660.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=420bp
MATISPVHGGGELVDRIVNEIPDAETLPKIVVNDVDMTSLYRIADGTLSP
LTGPMVKDDYDSVLTSKCIVRNGAKWAWTIPICLPVTAEEARVSPEGAKV
ALYSESSGKVFGVMEVSSLFEWDKAAFIKAVYGTERVDHPGARLWMTDDR
STMIGGEISLLPYEDSREFKDRIFSPKKMRAYLEQKGFGASIAFQTRNPL
HRAHEYALVYGAESLLKALGDEKKIGVFLNPLVGQLKGDDVPAKTRMETY
AKLIDEGYLGEGDMDEELWKSKSQNLKEQVTLAGLDMRMFYGGPSEAVMH
AIYRQNLGLTNFIIGRKHADAPFDDKSPIWGDFDAQEVFSNLGGQLSIKT
VNVGFAAYFEELGRVGLVADNKDKKSVSISGTKVREMLNRGEKPDDRVMR
PTTAEILIQYYQTKNAMKA*
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mRNA from alignment at NODE_558_length_22134_cov_4.093136:2919..4178-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2660.t1 ID=Gcaud2660.t1|Name=Gcaud2660.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1260bp|location=Sequence derived from alignment at NODE_558_length_22134_cov_4.093136:2919..4178- (Gracilaria caudata M_176_S67 male)
ATGGCTACCATTTCCCCAGTGCACGGAGGCGGTGAGTTGGTTGACCGTAT
CGTCAACGAGATCCCAGACGCTGAAACCCTCCCCAAGATTGTTGTCAATG
ATGTGGACATGACCTCCCTCTATCGAATTGCCGATGGCACCCTCTCCCCA
CTGACAGGCCCCATGGTCAAGGACGACTATGACTCAGTGCTTACCTCTAA
GTGCATTGTGCGCAACGGCGCTAAGTGGGCGTGGACCATCCCGATCTGCT
TGCCAGTCACTGCTGAGGAGGCGCGAGTCTCCCCCGAAGGCGCCAAGGTT
GCTCTGTACTCAGAGTCAAGCGGCAAGGTCTTTGGTGTCATGGAAGTGTC
CTCGCTCTTTGAATGGGACAAGGCTGCCTTCATCAAGGCGGTGTACGGCA
CTGAGCGTGTGGACCACCCTGGTGCCCGTCTGTGGATGACCGACGATCGC
TCTACTATGATTGGTGGCGAGATTTCGCTTCTGCCTTATGAGGACTCCAG
AGAATTCAAGGATCGTATCTTCTCCCCGAAGAAGATGAGGGCCTACCTGG
AGCAGAAGGGCTTCGGTGCTTCTATTGCGTTCCAGACACGCAACCCGCTT
CACAGGGCACACGAGTATGCGCTCGTATACGGCGCCGAGTCCCTGCTCAA
GGCCCTGGGTGATGAGAAAAAGATTGGTGTATTCCTGAACCCGTTGGTTG
GTCAGCTCAAGGGCGATGACGTCCCTGCGAAGACCAGGATGGAAACCTAT
GCTAAACTCATTGATGAGGGTTATTTGGGAGAGGGAGATATGGACGAGGA
ACTGTGGAAGTCCAAGAGCCAGAACCTTAAGGAACAGGTTACCTTGGCTG
GATTGGACATGCGAATGTTCTATGGCGGCCCCTCGGAGGCTGTCATGCAT
GCCATCTACCGTCAGAACCTTGGCTTGACCAACTTTATCATTGGCCGCAA
GCACGCCGACGCTCCTTTCGATGACAAGTCGCCGATTTGGGGCGACTTTG
ATGCGCAGGAGGTGTTCTCCAACTTGGGCGGACAGTTGTCGATCAAGACT
GTGAATGTCGGTTTCGCCGCATACTTTGAGGAACTGGGTCGCGTCGGACT
CGTGGCTGATAATAAGGACAAGAAATCGGTGAGCATCTCCGGCACTAAGG
TGCGTGAGATGTTGAACCGTGGCGAGAAGCCAGACGATCGCGTGATGCGT
CCGACCACCGCGGAAATCCTGATCCAATACTACCAGACGAAGAACGCGAT
GAAGGCGTGA
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Coding sequence (CDS) from alignment at NODE_558_length_22134_cov_4.093136:2919..4178-

>Gcaud2660.t1 ID=Gcaud2660.t1|Name=Gcaud2660.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1260bp|location=Sequence derived from alignment at NODE_558_length_22134_cov_4.093136:2919..4178- (Gracilaria caudata M_176_S67 male)
ATGGCTACCATTTCCCCAGTGCACGGAGGCGGTGAGTTGGTTGACCGTAT
CGTCAACGAGATCCCAGACGCTGAAACCCTCCCCAAGATTGTTGTCAATG
ATGTGGACATGACCTCCCTCTATCGAATTGCCGATGGCACCCTCTCCCCA
CTGACAGGCCCCATGGTCAAGGACGACTATGACTCAGTGCTTACCTCTAA
GTGCATTGTGCGCAACGGCGCTAAGTGGGCGTGGACCATCCCGATCTGCT
TGCCAGTCACTGCTGAGGAGGCGCGAGTCTCCCCCGAAGGCGCCAAGGTT
GCTCTGTACTCAGAGTCAAGCGGCAAGGTCTTTGGTGTCATGGAAGTGTC
CTCGCTCTTTGAATGGGACAAGGCTGCCTTCATCAAGGCGGTGTACGGCA
CTGAGCGTGTGGACCACCCTGGTGCCCGTCTGTGGATGACCGACGATCGC
TCTACTATGATTGGTGGCGAGATTTCGCTTCTGCCTTATGAGGACTCCAG
AGAATTCAAGGATCGTATCTTCTCCCCGAAGAAGATGAGGGCCTACCTGG
AGCAGAAGGGCTTCGGTGCTTCTATTGCGTTCCAGACACGCAACCCGCTT
CACAGGGCACACGAGTATGCGCTCGTATACGGCGCCGAGTCCCTGCTCAA
GGCCCTGGGTGATGAGAAAAAGATTGGTGTATTCCTGAACCCGTTGGTTG
GTCAGCTCAAGGGCGATGACGTCCCTGCGAAGACCAGGATGGAAACCTAT
GCTAAACTCATTGATGAGGGTTATTTGGGAGAGGGAGATATGGACGAGGA
ACTGTGGAAGTCCAAGAGCCAGAACCTTAAGGAACAGGTTACCTTGGCTG
GATTGGACATGCGAATGTTCTATGGCGGCCCCTCGGAGGCTGTCATGCAT
GCCATCTACCGTCAGAACCTTGGCTTGACCAACTTTATCATTGGCCGCAA
GCACGCCGACGCTCCTTTCGATGACAAGTCGCCGATTTGGGGCGACTTTG
ATGCGCAGGAGGTGTTCTCCAACTTGGGCGGACAGTTGTCGATCAAGACT
GTGAATGTCGGTTTCGCCGCATACTTTGAGGAACTGGGTCGCGTCGGACT
CGTGGCTGATAATAAGGACAAGAAATCGGTGAGCATCTCCGGCACTAAGG
TGCGTGAGATGTTGAACCGTGGCGAGAAGCCAGACGATCGCGTGATGCGT
CCGACCACCGCGGAAATCCTGATCCAATACTACCAGACGAAGAACGCGAT
GAAGGCGTGA
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