Gcaud2650.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2650.t1
Unique Name	Gcaud2650.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	464

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2184_length_6535_cov_4.045624	contig	NODE_2184_length_6535_cov_4.045624:5117..6508 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703133.1
PFAMs	2-oxoacid_dh,Biotin_lipoyl,E3_binding
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00004,RC02742,RC02857
KEGG ko	ko:K00627,ko:K13997
KEGG Reaction	R00209,R02569
KEGG Pathway	ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200
KEGG Module	M00307
Evalue	1.17e-88
EggNOG OGs	COG0508@1\|root,KOG0557@2759\|Eukaryota
EC	2.3.1.12
Description	dihydrolipoyllysine-residue acetyltransferase activity
COG category	C
BRITE	br01601,ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2650	Gcaud2650	Gracilaria caudata M_176_S67 male	gene	NODE_2184_length_6535_cov_4.045624 5117..6508 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2650.t1.stop1	Gcaud2650.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2184_length_6535_cov_4.045624 5117..5119 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2650.t1.CDS1	Gcaud2650.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2184_length_6535_cov_4.045624 5117..6508 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2650.t1.exon1	Gcaud2650.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2184_length_6535_cov_4.045624 5117..6508 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2650.t1.start1	Gcaud2650.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2184_length_6535_cov_4.045624 6506..6508 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2650.t1	Gcaud2650.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2184_length_6535_cov_4.045624 5117..6508 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2184_length_6535_cov_4.045624:5117..6508-
coding sequence from alignment at NODE_2184_length_6535_cov_4.045624:5117..6508-

mRNA sequence

>Gcaud2650.t1 ID=Gcaud2650.t1|Name=Gcaud2650.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=464bp
MLPLSGRLAPAARRLSWRTFAALPDHARIIMPKVSPTMTAGRLVVWKKRE
GDAFQEGEDIADVESDKATMPISAREDGFMAKIFVPDDTPDIPLGQLLAI
TVEEPEDVAAFADYQPPSTDQSDLPSPTQQPSPAPSAPAASPAQPSPSSQ
YTGPLGPAIMRLLNQYPNIDLNAITPTGPKGRMLKGDVLLAIEDGSAFAS
DQKPSVTHTTSKRTESATKLSPTTATTEQQPEPQPYHDTSVTSMRRAIAK
RLVQSKTTIPHRYTSAKYQLDSLLDLRKRLNAIEPSPTISVNDFVIKAVA
IALRRVPHMNAYWDQQQQSAMLRDQVDISMAVAIEGGLITPIVTEADRRG
LAEIARVTKDLAARAKEGTLDPAEFEGGSFSTSNLGMFGIASFCAIINPP
QSGNLAISSGVPRAVMDSDGTLRTVTEGTVTLSTDARVVDDDTAASFLKE
LTTCLTFPETMIS*

spliced messenger RNA

>Gcaud2650.t1 ID=Gcaud2650.t1|Name=Gcaud2650.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1392bp|location=Sequence derived from alignment at NODE_2184_length_6535_cov_4.045624:5117..6508- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCCCCCTCTCCGGCCGCCTCGCGCCTGCCGCGCGCCGTCTCTCGTG
GCGCACATTCGCCGCCCTCCCCGATCACGCCCGCATCATCATGCCCAAGG
TCAGCCCCACAATGACCGCCGGCCGCCTCGTCGTCTGGAAGAAGCGTGAG
GGCGACGCCTTCCAGGAGGGCGAAGACATCGCCGATGTCGAGTCTGACAA
GGCTACCATGCCGATCTCTGCGCGTGAGGACGGTTTTATGGCCAAGATCT
TCGTCCCCGATGACACCCCCGATATCCCCCTCGGCCAACTGCTCGCCATC
ACCGTCGAGGAGCCTGAGGACGTCGCCGCCTTCGCCGACTACCAGCCCCC
GTCAACCGACCAGTCCGATCTGCCGTCGCCCACGCAGCAGCCCTCCCCCG
CCCCATCCGCGCCCGCTGCATCGCCTGCTCAGCCCTCCCCGTCCTCGCAG
TACACCGGACCGCTCGGGCCGGCTATCATGCGTCTGCTCAACCAGTATCC
GAACATCGATTTAAATGCCATCACCCCTACCGGTCCAAAGGGAAGGATGC
TCAAGGGCGATGTCCTTCTTGCTATCGAAGATGGATCTGCCTTTGCATCC
GATCAAAAACCATCTGTCACGCACACCACTTCTAAACGCACTGAATCCGC
TACTAAACTCAGTCCAACAACCGCAACAACAGAGCAACAGCCGGAGCCGC
AACCTTATCACGACACTTCCGTCACGTCTATGAGACGTGCTATAGCCAAA
CGTCTGGTACAATCAAAGACAACAATTCCGCACAGATACACCTCAGCTAA
GTACCAATTAGATTCACTACTCGATCTGCGCAAACGGCTCAACGCCATAG
AGCCTTCGCCCACAATATCAGTCAACGATTTTGTCATCAAGGCCGTCGCA
ATAGCACTCAGGCGCGTCCCTCACATGAATGCGTACTGGGATCAGCAACA
GCAAAGTGCCATGCTCCGCGATCAAGTTGACATTTCCATGGCCGTAGCGA
TTGAAGGAGGCCTAATTACTCCTATTGTCACGGAAGCCGACAGACGCGGC
CTGGCCGAGATCGCGCGCGTAACAAAGGATCTGGCAGCCCGTGCGAAGGA
AGGCACGCTTGATCCAGCTGAATTTGAGGGTGGTTCATTTAGTACTAGTA
ATCTAGGCATGTTTGGAATTGCATCTTTCTGCGCTATCATTAATCCCCCC
CAAAGCGGCAATTTGGCCATAAGTAGCGGAGTTCCACGAGCAGTGATGGA
TTCTGATGGAACGCTGCGCACTGTTACAGAAGGAACAGTGACTCTTTCCA
CCGATGCTCGTGTTGTTGATGACGATACCGCCGCTTCCTTTTTGAAAGAA
TTAACCACATGTCTCACCTTCCCAGAGACAATGATCTCTTGA

protein sequence of Gcaud2650.t1

>Gcaud2650.t1 ID=Gcaud2650.t1|Name=Gcaud2650.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=464bp
MLPLSGRLAPAARRLSWRTFAALPDHARIIMPKVSPTMTAGRLVVWKKRE
GDAFQEGEDIADVESDKATMPISAREDGFMAKIFVPDDTPDIPLGQLLAI
TVEEPEDVAAFADYQPPSTDQSDLPSPTQQPSPAPSAPAASPAQPSPSSQ
YTGPLGPAIMRLLNQYPNIDLNAITPTGPKGRMLKGDVLLAIEDGSAFAS
DQKPSVTHTTSKRTESATKLSPTTATTEQQPEPQPYHDTSVTSMRRAIAK
RLVQSKTTIPHRYTSAKYQLDSLLDLRKRLNAIEPSPTISVNDFVIKAVA
IALRRVPHMNAYWDQQQQSAMLRDQVDISMAVAIEGGLITPIVTEADRRG
LAEIARVTKDLAARAKEGTLDPAEFEGGSFSTSNLGMFGIASFCAIINPP
QSGNLAISSGVPRAVMDSDGTLRTVTEGTVTLSTDARVVDDDTAASFLKE
LTTCLTFPETMIS*

mRNA from alignment at NODE_2184_length_6535_cov_4.045624:5117..6508-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2650.t1 ID=Gcaud2650.t1|Name=Gcaud2650.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1392bp|location=Sequence derived from alignment at NODE_2184_length_6535_cov_4.045624:5117..6508- (Gracilaria caudata M_176_S67 male)
ATGCTCCCCCTCTCCGGCCGCCTCGCGCCTGCCGCGCGCCGTCTCTCGTG
GCGCACATTCGCCGCCCTCCCCGATCACGCCCGCATCATCATGCCCAAGG
TCAGCCCCACAATGACCGCCGGCCGCCTCGTCGTCTGGAAGAAGCGTGAG
GGCGACGCCTTCCAGGAGGGCGAAGACATCGCCGATGTCGAGTCTGACAA
GGCTACCATGCCGATCTCTGCGCGTGAGGACGGTTTTATGGCCAAGATCT
TCGTCCCCGATGACACCCCCGATATCCCCCTCGGCCAACTGCTCGCCATC
ACCGTCGAGGAGCCTGAGGACGTCGCCGCCTTCGCCGACTACCAGCCCCC
GTCAACCGACCAGTCCGATCTGCCGTCGCCCACGCAGCAGCCCTCCCCCG
CCCCATCCGCGCCCGCTGCATCGCCTGCTCAGCCCTCCCCGTCCTCGCAG
TACACCGGACCGCTCGGGCCGGCTATCATGCGTCTGCTCAACCAGTATCC
GAACATCGATTTAAATGCCATCACCCCTACCGGTCCAAAGGGAAGGATGC
TCAAGGGCGATGTCCTTCTTGCTATCGAAGATGGATCTGCCTTTGCATCC
GATCAAAAACCATCTGTCACGCACACCACTTCTAAACGCACTGAATCCGC
TACTAAACTCAGTCCAACAACCGCAACAACAGAGCAACAGCCGGAGCCGC
AACCTTATCACGACACTTCCGTCACGTCTATGAGACGTGCTATAGCCAAA
CGTCTGGTACAATCAAAGACAACAATTCCGCACAGATACACCTCAGCTAA
GTACCAATTAGATTCACTACTCGATCTGCGCAAACGGCTCAACGCCATAG
AGCCTTCGCCCACAATATCAGTCAACGATTTTGTCATCAAGGCCGTCGCA
ATAGCACTCAGGCGCGTCCCTCACATGAATGCGTACTGGGATCAGCAACA
GCAAAGTGCCATGCTCCGCGATCAAGTTGACATTTCCATGGCCGTAGCGA
TTGAAGGAGGCCTAATTACTCCTATTGTCACGGAAGCCGACAGACGCGGC
CTGGCCGAGATCGCGCGCGTAACAAAGGATCTGGCAGCCCGTGCGAAGGA
AGGCACGCTTGATCCAGCTGAATTTGAGGGTGGTTCATTTAGTACTAGTA
ATCTAGGCATGTTTGGAATTGCATCTTTCTGCGCTATCATTAATCCCCCC
CAAAGCGGCAATTTGGCCATAAGTAGCGGAGTTCCACGAGCAGTGATGGA
TTCTGATGGAACGCTGCGCACTGTTACAGAAGGAACAGTGACTCTTTCCA
CCGATGCTCGTGTTGTTGATGACGATACCGCCGCTTCCTTTTTGAAAGAA
TTAACCACATGTCTCACCTTCCCAGAGACAATGATCTCTTGA

Coding sequence (CDS) from alignment at NODE_2184_length_6535_cov_4.045624:5117..6508-

>Gcaud2650.t1 ID=Gcaud2650.t1|Name=Gcaud2650.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1392bp|location=Sequence derived from alignment at NODE_2184_length_6535_cov_4.045624:5117..6508- (Gracilaria caudata M_176_S67 male)
ATGCTCCCCCTCTCCGGCCGCCTCGCGCCTGCCGCGCGCCGTCTCTCGTG
GCGCACATTCGCCGCCCTCCCCGATCACGCCCGCATCATCATGCCCAAGG
TCAGCCCCACAATGACCGCCGGCCGCCTCGTCGTCTGGAAGAAGCGTGAG
GGCGACGCCTTCCAGGAGGGCGAAGACATCGCCGATGTCGAGTCTGACAA
GGCTACCATGCCGATCTCTGCGCGTGAGGACGGTTTTATGGCCAAGATCT
TCGTCCCCGATGACACCCCCGATATCCCCCTCGGCCAACTGCTCGCCATC
ACCGTCGAGGAGCCTGAGGACGTCGCCGCCTTCGCCGACTACCAGCCCCC
GTCAACCGACCAGTCCGATCTGCCGTCGCCCACGCAGCAGCCCTCCCCCG
CCCCATCCGCGCCCGCTGCATCGCCTGCTCAGCCCTCCCCGTCCTCGCAG
TACACCGGACCGCTCGGGCCGGCTATCATGCGTCTGCTCAACCAGTATCC
GAACATCGATTTAAATGCCATCACCCCTACCGGTCCAAAGGGAAGGATGC
TCAAGGGCGATGTCCTTCTTGCTATCGAAGATGGATCTGCCTTTGCATCC
GATCAAAAACCATCTGTCACGCACACCACTTCTAAACGCACTGAATCCGC
TACTAAACTCAGTCCAACAACCGCAACAACAGAGCAACAGCCGGAGCCGC
AACCTTATCACGACACTTCCGTCACGTCTATGAGACGTGCTATAGCCAAA
CGTCTGGTACAATCAAAGACAACAATTCCGCACAGATACACCTCAGCTAA
GTACCAATTAGATTCACTACTCGATCTGCGCAAACGGCTCAACGCCATAG
AGCCTTCGCCCACAATATCAGTCAACGATTTTGTCATCAAGGCCGTCGCA
ATAGCACTCAGGCGCGTCCCTCACATGAATGCGTACTGGGATCAGCAACA
GCAAAGTGCCATGCTCCGCGATCAAGTTGACATTTCCATGGCCGTAGCGA
TTGAAGGAGGCCTAATTACTCCTATTGTCACGGAAGCCGACAGACGCGGC
CTGGCCGAGATCGCGCGCGTAACAAAGGATCTGGCAGCCCGTGCGAAGGA
AGGCACGCTTGATCCAGCTGAATTTGAGGGTGGTTCATTTAGTACTAGTA
ATCTAGGCATGTTTGGAATTGCATCTTTCTGCGCTATCATTAATCCCCCC
CAAAGCGGCAATTTGGCCATAAGTAGCGGAGTTCCACGAGCAGTGATGGA
TTCTGATGGAACGCTGCGCACTGTTACAGAAGGAACAGTGACTCTTTCCA
CCGATGCTCGTGTTGTTGATGACGATACCGCCGCTTCCTTTTTGAAAGAA
TTAACCACATGTCTCACCTTCCCAGAGACAATGATCTCTTGA