Gcaud2626.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2626.t1
Unique NameGcaud2626.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length342
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_205_length_37462_cov_4.544219contigNODE_205_length_37462_cov_4.544219:15412..16587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ18527
Max annot lvl35493|Streptophyta
Evalue1.08e-12
EggNOG OGsKOG3970@1|root,KOG3970@2759|Eukaryota,37N00@33090|Viridiplantae,3GAB7@35493|Streptophyta
Descriptionzinc finger
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2626Gcaud2626Gracilaria caudata M_176_S67 malegeneNODE_205_length_37462_cov_4.544219 15412..16587 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2626.t1Gcaud2626.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_205_length_37462_cov_4.544219 15412..16587 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2626.t1.stop1Gcaud2626.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_205_length_37462_cov_4.544219 15412..15414 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2626.t1.CDS1Gcaud2626.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_205_length_37462_cov_4.544219 15412..16208 -
Gcaud2626.t1.CDS2Gcaud2626.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_205_length_37462_cov_4.544219 16293..16413 -
Gcaud2626.t1.CDS3Gcaud2626.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_205_length_37462_cov_4.544219 16480..16587 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2626.t1.exon1Gcaud2626.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_205_length_37462_cov_4.544219 15412..16208 -
Gcaud2626.t1.exon2Gcaud2626.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_205_length_37462_cov_4.544219 16293..16413 -
Gcaud2626.t1.exon3Gcaud2626.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_205_length_37462_cov_4.544219 16480..16587 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2626.t1.intron1Gcaud2626.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_205_length_37462_cov_4.544219 16209..16292 -
Gcaud2626.t1.intron2Gcaud2626.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_205_length_37462_cov_4.544219 16414..16479 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2626.t1.start1Gcaud2626.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_205_length_37462_cov_4.544219 16585..16587 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2626.t1 ID=Gcaud2626.t1|Name=Gcaud2626.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=342bp
MGRCSVCRSQTQHFCFVHQAFACEACLVADESVHRRCVVRTYRNFIEDSS
YVWPPVCAACGKQLDIDGDNVRRICLHVEHASCIEVSSPPHHNCSTCQTP
LLDSASTSKLSHAIRKRLRNMTTITRSSAPTIATVTSWDDSDDWKRTSSR
NTMNLKLEQRQTDSESNSKIVSETDCSDGIGGKGALQAKSSADGTPSRVS
MAKRPLPPPVQNNARDLRLDLELLPQDKDGSGAGIKTAKRDAQSGGLITS
TSMRKVMKMGNRRLIDLRKLMSTNRRQLLTIIACVACIILVSFLMSGDDE
FNVVVRPAAEHVSLPHVRVNPAFLQPRKTGDNPRSVLANDQ*
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spliced messenger RNA

>Gcaud2626.t1 ID=Gcaud2626.t1|Name=Gcaud2626.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1026bp|location=Sequence derived from alignment at NODE_205_length_37462_cov_4.544219:15412..16587- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCCGTTGCAGTGTATGTCGCTCCCAAACGCAGCACTTTTGCTTCGT
GCATCAAGCTTTTGCATGTGAAGCTTGTCTGGTGGCCGACGAGTCCGTAC
ACAGAAGATGCGTGGTTCGCACTTATCGTAATTTCATCGAAGACTCTTCC
TACGTTTGGCCCCCGGTCTGTGCCGCGTGCGGTAAGCAACTTGACATCGA
CGGTGATAACGTTCGACGCATCTGTCTCCACGTGGAACACGCTTCTTGTA
TCGAAGTTTCAAGTCCTCCGCATCACAACTGCTCTACATGTCAAACACCG
CTCCTCGACAGCGCTAGTACTTCCAAGTTATCCCACGCCATAAGAAAACG
ACTGAGAAACATGACCACTATTACTCGCTCCAGTGCGCCGACGATCGCCA
CTGTCACTTCCTGGGATGATTCCGACGATTGGAAGCGAACATCGTCACGA
AATACGATGAATCTGAAACTGGAGCAACGCCAGACGGACTCAGAAAGCAA
TTCCAAGATTGTATCTGAAACAGATTGCAGTGATGGCATCGGTGGGAAGG
GCGCACTTCAAGCCAAGTCTAGTGCCGATGGCACTCCTTCTCGCGTTTCT
ATGGCGAAAAGACCTCTTCCGCCTCCTGTGCAAAACAACGCTAGAGATTT
GCGTTTAGATTTGGAGCTTTTACCACAGGATAAGGATGGCAGCGGCGCAG
GGATCAAAACGGCGAAGCGCGACGCTCAATCTGGAGGCCTCATTACATCG
ACTTCTATGCGCAAGGTTATGAAAATGGGTAACAGACGACTAATTGATCT
CAGAAAGCTTATGTCAACCAATCGTCGACAGCTTCTAACTATAATAGCTT
GTGTTGCTTGCATTATTCTGGTCAGCTTCCTCATGTCTGGTGACGACGAA
TTTAACGTCGTCGTCAGGCCAGCTGCTGAGCACGTTTCTCTACCACATGT
ACGGGTGAACCCTGCATTTCTTCAACCGCGGAAGACAGGTGACAACCCGA
GGAGTGTCTTGGCAAATGATCAGTGA
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protein sequence of Gcaud2626.t1

>Gcaud2626.t1 ID=Gcaud2626.t1|Name=Gcaud2626.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=342bp
MGRCSVCRSQTQHFCFVHQAFACEACLVADESVHRRCVVRTYRNFIEDSS
YVWPPVCAACGKQLDIDGDNVRRICLHVEHASCIEVSSPPHHNCSTCQTP
LLDSASTSKLSHAIRKRLRNMTTITRSSAPTIATVTSWDDSDDWKRTSSR
NTMNLKLEQRQTDSESNSKIVSETDCSDGIGGKGALQAKSSADGTPSRVS
MAKRPLPPPVQNNARDLRLDLELLPQDKDGSGAGIKTAKRDAQSGGLITS
TSMRKVMKMGNRRLIDLRKLMSTNRRQLLTIIACVACIILVSFLMSGDDE
FNVVVRPAAEHVSLPHVRVNPAFLQPRKTGDNPRSVLANDQ*
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mRNA from alignment at NODE_205_length_37462_cov_4.544219:15412..16587-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2626.t1 ID=Gcaud2626.t1|Name=Gcaud2626.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1176bp|location=Sequence derived from alignment at NODE_205_length_37462_cov_4.544219:15412..16587- (Gracilaria caudata M_176_S67 male)
ATGGGCCGTTGCAGTGTATGTCGCTCCCAAACGCAGCACTTTTGCTTCGT
GCATCAAGCTTTTGCATGTGAAGCTTGTCTGGTGGCCGACGAGTCCGTAC
ACAGAAGAGTGAGCAACCCATTTCAGTATCCATGACCGGCGTTTTTTTCG
TGTACTAACCACCTCTCGTTATAGTGCGTGGTTCGCACTTATCGTAATTT
CATCGAAGACTCTTCCTACGTTTGGCCCCCGGTCTGTGCCGCGTGCGGTA
AGCAACTTGACATCGACGGTGATAACGTTCGACGCATCTGTCTCCGTAAG
TGTTTTGCCTTTCTCTTTCGTTTGCTATACGTTTTGCAACCTCGTTTTTG
ACACCAATTCGTTTTCGTTTTGTTTTCAGACGTGGAACACGCTTCTTGTA
TCGAAGTTTCAAGTCCTCCGCATCACAACTGCTCTACATGTCAAACACCG
CTCCTCGACAGCGCTAGTACTTCCAAGTTATCCCACGCCATAAGAAAACG
ACTGAGAAACATGACCACTATTACTCGCTCCAGTGCGCCGACGATCGCCA
CTGTCACTTCCTGGGATGATTCCGACGATTGGAAGCGAACATCGTCACGA
AATACGATGAATCTGAAACTGGAGCAACGCCAGACGGACTCAGAAAGCAA
TTCCAAGATTGTATCTGAAACAGATTGCAGTGATGGCATCGGTGGGAAGG
GCGCACTTCAAGCCAAGTCTAGTGCCGATGGCACTCCTTCTCGCGTTTCT
ATGGCGAAAAGACCTCTTCCGCCTCCTGTGCAAAACAACGCTAGAGATTT
GCGTTTAGATTTGGAGCTTTTACCACAGGATAAGGATGGCAGCGGCGCAG
GGATCAAAACGGCGAAGCGCGACGCTCAATCTGGAGGCCTCATTACATCG
ACTTCTATGCGCAAGGTTATGAAAATGGGTAACAGACGACTAATTGATCT
CAGAAAGCTTATGTCAACCAATCGTCGACAGCTTCTAACTATAATAGCTT
GTGTTGCTTGCATTATTCTGGTCAGCTTCCTCATGTCTGGTGACGACGAA
TTTAACGTCGTCGTCAGGCCAGCTGCTGAGCACGTTTCTCTACCACATGT
ACGGGTGAACCCTGCATTTCTTCAACCGCGGAAGACAGGTGACAACCCGA
GGAGTGTCTTGGCAAATGATCAGTGA
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Coding sequence (CDS) from alignment at NODE_205_length_37462_cov_4.544219:15412..16587-

>Gcaud2626.t1 ID=Gcaud2626.t1|Name=Gcaud2626.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1026bp|location=Sequence derived from alignment at NODE_205_length_37462_cov_4.544219:15412..16587- (Gracilaria caudata M_176_S67 male)
ATGGGCCGTTGCAGTGTATGTCGCTCCCAAACGCAGCACTTTTGCTTCGT
GCATCAAGCTTTTGCATGTGAAGCTTGTCTGGTGGCCGACGAGTCCGTAC
ACAGAAGATGCGTGGTTCGCACTTATCGTAATTTCATCGAAGACTCTTCC
TACGTTTGGCCCCCGGTCTGTGCCGCGTGCGGTAAGCAACTTGACATCGA
CGGTGATAACGTTCGACGCATCTGTCTCCACGTGGAACACGCTTCTTGTA
TCGAAGTTTCAAGTCCTCCGCATCACAACTGCTCTACATGTCAAACACCG
CTCCTCGACAGCGCTAGTACTTCCAAGTTATCCCACGCCATAAGAAAACG
ACTGAGAAACATGACCACTATTACTCGCTCCAGTGCGCCGACGATCGCCA
CTGTCACTTCCTGGGATGATTCCGACGATTGGAAGCGAACATCGTCACGA
AATACGATGAATCTGAAACTGGAGCAACGCCAGACGGACTCAGAAAGCAA
TTCCAAGATTGTATCTGAAACAGATTGCAGTGATGGCATCGGTGGGAAGG
GCGCACTTCAAGCCAAGTCTAGTGCCGATGGCACTCCTTCTCGCGTTTCT
ATGGCGAAAAGACCTCTTCCGCCTCCTGTGCAAAACAACGCTAGAGATTT
GCGTTTAGATTTGGAGCTTTTACCACAGGATAAGGATGGCAGCGGCGCAG
GGATCAAAACGGCGAAGCGCGACGCTCAATCTGGAGGCCTCATTACATCG
ACTTCTATGCGCAAGGTTATGAAAATGGGTAACAGACGACTAATTGATCT
CAGAAAGCTTATGTCAACCAATCGTCGACAGCTTCTAACTATAATAGCTT
GTGTTGCTTGCATTATTCTGGTCAGCTTCCTCATGTCTGGTGACGACGAA
TTTAACGTCGTCGTCAGGCCAGCTGCTGAGCACGTTTCTCTACCACATGT
ACGGGTGAACCCTGCATTTCTTCAACCGCGGAAGACAGGTGACAACCCGA
GGAGTGTCTTGGCAAATGATCAGTGA
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