Gcaud2625.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2625.t1
Unique Name	Gcaud2625.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	290

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_205_length_37462_cov_4.544219	contig	NODE_205_length_37462_cov_4.544219:10997..11866 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMT288CT
Max annot lvl	2759\|Eukaryota
GOs	GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009767,GO:0009773,GO:0009987,GO:0015979,GO:0016020,GO:0016491,GO:0016730,GO:0019684,GO:0019904,GO:0022900,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0055114
Evalue	6.58e-55
EggNOG OGs	2CE1K@1\|root,2QRSK@2759\|Eukaryota
Description	photosynthetic electron transport in photosystem I
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2625	Gcaud2625	Gracilaria caudata M_176_S67 male	gene	NODE_205_length_37462_cov_4.544219 10997..11866 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2625.t1.start1	Gcaud2625.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_205_length_37462_cov_4.544219 10997..10999 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2625.t1.CDS1	Gcaud2625.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_205_length_37462_cov_4.544219 10997..11866 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2625.t1.exon1	Gcaud2625.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_205_length_37462_cov_4.544219 10997..11866 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2625.t1.stop1	Gcaud2625.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_205_length_37462_cov_4.544219 11864..11866 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2625.t1	Gcaud2625.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_205_length_37462_cov_4.544219 10997..11866 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_205_length_37462_cov_4.544219:10997..11866+
coding sequence from alignment at NODE_205_length_37462_cov_4.544219:10997..11866+

mRNA sequence

>Gcaud2625.t1 ID=Gcaud2625.t1|Name=Gcaud2625.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=290bp
MTGADGGPTSSQTPASSSAAPSENGAGASQANGIPEAERAKVVLDENIGG
FCSINPRTGRRLELSLRAKESLFLDAVQAYFRGEPIVSNAEFDALKEELT
WQGSQVASLDRDEFRFLEAAKSYERGTPSMSDEEFDALKVKLMNEGSVVA
IQRGPRCSVTRQITFSDVITDKRRTFALYVPAGVLFALIWLSVAFELTPL
HNVDPVLSLILGSPLIVLASRLLTGLVVPKAEIMVGDCPSCGRRTHVLFG
NVLNQPGFQDTANVKCEKCKASLKVERSSNRMILLAEGQ*

spliced messenger RNA

>Gcaud2625.t1 ID=Gcaud2625.t1|Name=Gcaud2625.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=870bp|location=Sequence derived from alignment at NODE_205_length_37462_cov_4.544219:10997..11866+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGGTGCGGATGGCGGACCGACGTCGTCGCAAACGCCGGCGTCGTC
GTCAGCCGCGCCGTCTGAAAACGGCGCCGGCGCGTCACAAGCGAACGGCA
TACCAGAGGCGGAGCGCGCCAAAGTGGTGCTCGACGAGAACATTGGCGGG
TTCTGTTCCATCAATCCGAGGACAGGACGGCGTCTGGAACTGTCTCTGCG
CGCCAAGGAGTCGCTGTTTTTGGACGCGGTGCAGGCGTATTTCCGCGGCG
AGCCCATTGTGAGTAACGCCGAGTTTGACGCGCTCAAGGAGGAGCTCACA
TGGCAGGGCTCGCAAGTGGCTTCTCTCGACCGGGATGAATTCCGTTTTCT
TGAGGCTGCCAAGTCGTACGAACGGGGAACGCCGTCCATGTCGGACGAGG
AGTTTGATGCGCTCAAAGTGAAGCTGATGAACGAGGGCAGTGTGGTGGCC
ATTCAGCGTGGACCGCGGTGTTCGGTGACGAGGCAGATCACGTTTTCGGA
TGTTATCACCGACAAGCGCCGGACGTTTGCTCTGTACGTTCCCGCGGGCG
TTCTGTTTGCGTTGATATGGTTGTCTGTTGCGTTCGAGCTGACGCCGCTG
CACAACGTGGACCCGGTGCTGTCGCTAATTCTGGGCTCGCCGCTGATTGT
GCTTGCGTCGAGGCTGCTGACGGGGTTGGTGGTGCCGAAGGCGGAAATCA
TGGTGGGCGACTGTCCGAGCTGCGGCAGACGCACGCACGTTCTGTTTGGA
AACGTGCTGAACCAGCCGGGCTTCCAGGACACGGCCAACGTGAAGTGCGA
GAAGTGCAAGGCGTCGCTCAAGGTGGAGCGGAGTTCAAATCGCATGATTC
TGTTGGCGGAGGGCCAGTAG

protein sequence of Gcaud2625.t1

>Gcaud2625.t1 ID=Gcaud2625.t1|Name=Gcaud2625.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=290bp
MTGADGGPTSSQTPASSSAAPSENGAGASQANGIPEAERAKVVLDENIGG
FCSINPRTGRRLELSLRAKESLFLDAVQAYFRGEPIVSNAEFDALKEELT
WQGSQVASLDRDEFRFLEAAKSYERGTPSMSDEEFDALKVKLMNEGSVVA
IQRGPRCSVTRQITFSDVITDKRRTFALYVPAGVLFALIWLSVAFELTPL
HNVDPVLSLILGSPLIVLASRLLTGLVVPKAEIMVGDCPSCGRRTHVLFG
NVLNQPGFQDTANVKCEKCKASLKVERSSNRMILLAEGQ*

mRNA from alignment at NODE_205_length_37462_cov_4.544219:10997..11866+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2625.t1 ID=Gcaud2625.t1|Name=Gcaud2625.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=870bp|location=Sequence derived from alignment at NODE_205_length_37462_cov_4.544219:10997..11866+ (Gracilaria caudata M_176_S67 male)
ATGACGGGTGCGGATGGCGGACCGACGTCGTCGCAAACGCCGGCGTCGTC
GTCAGCCGCGCCGTCTGAAAACGGCGCCGGCGCGTCACAAGCGAACGGCA
TACCAGAGGCGGAGCGCGCCAAAGTGGTGCTCGACGAGAACATTGGCGGG
TTCTGTTCCATCAATCCGAGGACAGGACGGCGTCTGGAACTGTCTCTGCG
CGCCAAGGAGTCGCTGTTTTTGGACGCGGTGCAGGCGTATTTCCGCGGCG
AGCCCATTGTGAGTAACGCCGAGTTTGACGCGCTCAAGGAGGAGCTCACA
TGGCAGGGCTCGCAAGTGGCTTCTCTCGACCGGGATGAATTCCGTTTTCT
TGAGGCTGCCAAGTCGTACGAACGGGGAACGCCGTCCATGTCGGACGAGG
AGTTTGATGCGCTCAAAGTGAAGCTGATGAACGAGGGCAGTGTGGTGGCC
ATTCAGCGTGGACCGCGGTGTTCGGTGACGAGGCAGATCACGTTTTCGGA
TGTTATCACCGACAAGCGCCGGACGTTTGCTCTGTACGTTCCCGCGGGCG
TTCTGTTTGCGTTGATATGGTTGTCTGTTGCGTTCGAGCTGACGCCGCTG
CACAACGTGGACCCGGTGCTGTCGCTAATTCTGGGCTCGCCGCTGATTGT
GCTTGCGTCGAGGCTGCTGACGGGGTTGGTGGTGCCGAAGGCGGAAATCA
TGGTGGGCGACTGTCCGAGCTGCGGCAGACGCACGCACGTTCTGTTTGGA
AACGTGCTGAACCAGCCGGGCTTCCAGGACACGGCCAACGTGAAGTGCGA
GAAGTGCAAGGCGTCGCTCAAGGTGGAGCGGAGTTCAAATCGCATGATTC
TGTTGGCGGAGGGCCAGTAG

Coding sequence (CDS) from alignment at NODE_205_length_37462_cov_4.544219:10997..11866+

>Gcaud2625.t1 ID=Gcaud2625.t1|Name=Gcaud2625.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=870bp|location=Sequence derived from alignment at NODE_205_length_37462_cov_4.544219:10997..11866+ (Gracilaria caudata M_176_S67 male)
ATGACGGGTGCGGATGGCGGACCGACGTCGTCGCAAACGCCGGCGTCGTC
GTCAGCCGCGCCGTCTGAAAACGGCGCCGGCGCGTCACAAGCGAACGGCA
TACCAGAGGCGGAGCGCGCCAAAGTGGTGCTCGACGAGAACATTGGCGGG
TTCTGTTCCATCAATCCGAGGACAGGACGGCGTCTGGAACTGTCTCTGCG
CGCCAAGGAGTCGCTGTTTTTGGACGCGGTGCAGGCGTATTTCCGCGGCG
AGCCCATTGTGAGTAACGCCGAGTTTGACGCGCTCAAGGAGGAGCTCACA
TGGCAGGGCTCGCAAGTGGCTTCTCTCGACCGGGATGAATTCCGTTTTCT
TGAGGCTGCCAAGTCGTACGAACGGGGAACGCCGTCCATGTCGGACGAGG
AGTTTGATGCGCTCAAAGTGAAGCTGATGAACGAGGGCAGTGTGGTGGCC
ATTCAGCGTGGACCGCGGTGTTCGGTGACGAGGCAGATCACGTTTTCGGA
TGTTATCACCGACAAGCGCCGGACGTTTGCTCTGTACGTTCCCGCGGGCG
TTCTGTTTGCGTTGATATGGTTGTCTGTTGCGTTCGAGCTGACGCCGCTG
CACAACGTGGACCCGGTGCTGTCGCTAATTCTGGGCTCGCCGCTGATTGT
GCTTGCGTCGAGGCTGCTGACGGGGTTGGTGGTGCCGAAGGCGGAAATCA
TGGTGGGCGACTGTCCGAGCTGCGGCAGACGCACGCACGTTCTGTTTGGA
AACGTGCTGAACCAGCCGGGCTTCCAGGACACGGCCAACGTGAAGTGCGA
GAAGTGCAAGGCGTCGCTCAAGGTGGAGCGGAGTTCAAATCGCATGATTC
TGTTGGCGGAGGGCCAGTAG