Gcaud2624.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2624.t1
Unique NameGcaud2624.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length384
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_205_length_37462_cov_4.544219contigNODE_205_length_37462_cov_4.544219:9109..10260 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7994.ENSAMXP00000019464
Preferred nameC9orf41
PFAMsN2227
Max annot lvl33208|Metazoa
KEGG rclassRC00003,RC00333
KEGG koko:K19787
KEGG ReactionR02144
KEGG Pathwayko00340,map00340
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006082,GO:0006518,GO:0006520,GO:0006547,GO:0006548,GO:0006575,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0009056,GO:0009063,GO:0009987,GO:0016054,GO:0016740,GO:0016741,GO:0017144,GO:0019439,GO:0019752,GO:0030735,GO:0032259,GO:0034641,GO:0035498,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0046483,GO:0046700,GO:0052803,GO:0052805,GO:0071704,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606
Evalue1.94e-48
EggNOG OGsKOG2798@1|root,KOG2798@2759|Eukaryota,38H1C@33154|Opisthokonta,3BG3I@33208|Metazoa,3CSKA@33213|Bilateria,481D7@7711|Chordata,496D6@7742|Vertebrata,4A18K@7898|Actinopterygii
EC2.1.1.22
DescriptionChromosome 9 open reading frame 41
COG categoryG
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2624Gcaud2624Gracilaria caudata M_176_S67 malegeneNODE_205_length_37462_cov_4.544219 9109..10260 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2624.t1.stop1Gcaud2624.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_205_length_37462_cov_4.544219 9109..9111 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2624.t1.CDS1Gcaud2624.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_205_length_37462_cov_4.544219 9109..10260 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2624.t1.exon1Gcaud2624.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_205_length_37462_cov_4.544219 9109..10260 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2624.t1.start1Gcaud2624.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_205_length_37462_cov_4.544219 10258..10260 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2624.t1Gcaud2624.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_205_length_37462_cov_4.544219 9109..10260 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2624.t1 ID=Gcaud2624.t1|Name=Gcaud2624.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=384bp
MSVTSDHGISLQQFPAKALDAYGEVEFSRLDRKLSMFRALPQHDRDLLPE
FDQRLSALADCIEQNTRLLSVMVQSAASIRAPVAAAANEYNDAGDDAHEG
AKTANGGTGHDAVNDERKQYLARQVSRGFALLAKDWSADGAEQRATCYKP
LLEAVEHAYEEAARASRSLARKDFRVLVPGAGAGRLPWELVHRGFMVEGC
EANASALLVGNFVLNNCSHDDAITMYPFAHEHSNVRSRSQATRGVLVPDV
NPKDIPPHTDFSIRAGSFLDAYDGHDSSWDAVVSSMAFDLGESVIAHVRR
VSQILKPGGVWAFVGPMPCLDGGQNDMIHLSIGEFMTIVRKGGFKMVKQD
MVRCMHSNDPASMRAVHVECPLVVALKVRPALK*
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spliced messenger RNA

>Gcaud2624.t1 ID=Gcaud2624.t1|Name=Gcaud2624.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1152bp|location=Sequence derived from alignment at NODE_205_length_37462_cov_4.544219:9109..10260- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGTCACGTCCGACCATGGCATCAGTCTTCAGCAATTTCCGGCAAA
GGCGTTGGATGCATACGGCGAAGTGGAATTCTCGCGTCTCGATCGCAAGC
TCAGCATGTTCCGCGCGCTACCGCAGCACGACCGCGATCTTCTGCCGGAA
TTCGACCAACGTCTGTCTGCGCTTGCCGACTGCATCGAACAGAACACGCG
TCTGTTATCCGTCATGGTGCAGAGCGCCGCGTCGATACGAGCGCCCGTTG
CAGCTGCTGCTAACGAATACAACGACGCCGGTGACGACGCGCACGAAGGC
GCTAAGACGGCGAACGGTGGCACGGGACACGACGCTGTCAACGATGAGCG
TAAACAATACTTAGCGCGTCAAGTGAGTCGTGGATTTGCTCTGCTTGCGA
AGGATTGGAGCGCTGATGGAGCCGAGCAGCGTGCAACCTGTTACAAGCCT
TTGCTGGAAGCTGTGGAACACGCGTATGAGGAAGCGGCACGTGCCTCCAG
ATCTTTGGCTCGAAAGGATTTCCGCGTGCTGGTACCAGGTGCGGGCGCGG
GGCGATTACCGTGGGAGTTGGTTCATCGTGGCTTTATGGTGGAAGGGTGT
GAGGCGAACGCAAGCGCACTGTTGGTCGGAAATTTCGTGCTCAACAACTG
TAGCCATGATGACGCTATCACGATGTATCCGTTTGCTCATGAGCACTCTA
ACGTGAGATCAAGGTCGCAGGCCACTCGCGGCGTGCTGGTGCCCGACGTG
AACCCCAAGGACATTCCGCCCCACACCGACTTTTCGATCCGCGCGGGCAG
TTTCTTGGACGCGTACGACGGGCACGACAGTAGCTGGGACGCTGTGGTGA
GCTCGATGGCATTCGACCTCGGCGAGTCGGTGATCGCGCACGTGCGCAGA
GTATCGCAAATTTTGAAACCAGGCGGCGTGTGGGCGTTCGTGGGACCCAT
GCCGTGCCTGGACGGCGGCCAGAACGACATGATTCACCTGTCGATTGGCG
AGTTCATGACGATAGTGAGAAAGGGCGGTTTCAAAATGGTGAAGCAGGAT
ATGGTTCGCTGCATGCATTCCAACGACCCCGCCTCCATGCGCGCGGTGCA
CGTGGAATGCCCTCTTGTAGTTGCTCTGAAGGTGCGACCAGCTCTCAAGT
GA
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protein sequence of Gcaud2624.t1

>Gcaud2624.t1 ID=Gcaud2624.t1|Name=Gcaud2624.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=384bp
MSVTSDHGISLQQFPAKALDAYGEVEFSRLDRKLSMFRALPQHDRDLLPE
FDQRLSALADCIEQNTRLLSVMVQSAASIRAPVAAAANEYNDAGDDAHEG
AKTANGGTGHDAVNDERKQYLARQVSRGFALLAKDWSADGAEQRATCYKP
LLEAVEHAYEEAARASRSLARKDFRVLVPGAGAGRLPWELVHRGFMVEGC
EANASALLVGNFVLNNCSHDDAITMYPFAHEHSNVRSRSQATRGVLVPDV
NPKDIPPHTDFSIRAGSFLDAYDGHDSSWDAVVSSMAFDLGESVIAHVRR
VSQILKPGGVWAFVGPMPCLDGGQNDMIHLSIGEFMTIVRKGGFKMVKQD
MVRCMHSNDPASMRAVHVECPLVVALKVRPALK*
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mRNA from alignment at NODE_205_length_37462_cov_4.544219:9109..10260-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2624.t1 ID=Gcaud2624.t1|Name=Gcaud2624.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1152bp|location=Sequence derived from alignment at NODE_205_length_37462_cov_4.544219:9109..10260- (Gracilaria caudata M_176_S67 male)
ATGAGCGTCACGTCCGACCATGGCATCAGTCTTCAGCAATTTCCGGCAAA
GGCGTTGGATGCATACGGCGAAGTGGAATTCTCGCGTCTCGATCGCAAGC
TCAGCATGTTCCGCGCGCTACCGCAGCACGACCGCGATCTTCTGCCGGAA
TTCGACCAACGTCTGTCTGCGCTTGCCGACTGCATCGAACAGAACACGCG
TCTGTTATCCGTCATGGTGCAGAGCGCCGCGTCGATACGAGCGCCCGTTG
CAGCTGCTGCTAACGAATACAACGACGCCGGTGACGACGCGCACGAAGGC
GCTAAGACGGCGAACGGTGGCACGGGACACGACGCTGTCAACGATGAGCG
TAAACAATACTTAGCGCGTCAAGTGAGTCGTGGATTTGCTCTGCTTGCGA
AGGATTGGAGCGCTGATGGAGCCGAGCAGCGTGCAACCTGTTACAAGCCT
TTGCTGGAAGCTGTGGAACACGCGTATGAGGAAGCGGCACGTGCCTCCAG
ATCTTTGGCTCGAAAGGATTTCCGCGTGCTGGTACCAGGTGCGGGCGCGG
GGCGATTACCGTGGGAGTTGGTTCATCGTGGCTTTATGGTGGAAGGGTGT
GAGGCGAACGCAAGCGCACTGTTGGTCGGAAATTTCGTGCTCAACAACTG
TAGCCATGATGACGCTATCACGATGTATCCGTTTGCTCATGAGCACTCTA
ACGTGAGATCAAGGTCGCAGGCCACTCGCGGCGTGCTGGTGCCCGACGTG
AACCCCAAGGACATTCCGCCCCACACCGACTTTTCGATCCGCGCGGGCAG
TTTCTTGGACGCGTACGACGGGCACGACAGTAGCTGGGACGCTGTGGTGA
GCTCGATGGCATTCGACCTCGGCGAGTCGGTGATCGCGCACGTGCGCAGA
GTATCGCAAATTTTGAAACCAGGCGGCGTGTGGGCGTTCGTGGGACCCAT
GCCGTGCCTGGACGGCGGCCAGAACGACATGATTCACCTGTCGATTGGCG
AGTTCATGACGATAGTGAGAAAGGGCGGTTTCAAAATGGTGAAGCAGGAT
ATGGTTCGCTGCATGCATTCCAACGACCCCGCCTCCATGCGCGCGGTGCA
CGTGGAATGCCCTCTTGTAGTTGCTCTGAAGGTGCGACCAGCTCTCAAGT
GA
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Coding sequence (CDS) from alignment at NODE_205_length_37462_cov_4.544219:9109..10260-

>Gcaud2624.t1 ID=Gcaud2624.t1|Name=Gcaud2624.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1152bp|location=Sequence derived from alignment at NODE_205_length_37462_cov_4.544219:9109..10260- (Gracilaria caudata M_176_S67 male)
ATGAGCGTCACGTCCGACCATGGCATCAGTCTTCAGCAATTTCCGGCAAA
GGCGTTGGATGCATACGGCGAAGTGGAATTCTCGCGTCTCGATCGCAAGC
TCAGCATGTTCCGCGCGCTACCGCAGCACGACCGCGATCTTCTGCCGGAA
TTCGACCAACGTCTGTCTGCGCTTGCCGACTGCATCGAACAGAACACGCG
TCTGTTATCCGTCATGGTGCAGAGCGCCGCGTCGATACGAGCGCCCGTTG
CAGCTGCTGCTAACGAATACAACGACGCCGGTGACGACGCGCACGAAGGC
GCTAAGACGGCGAACGGTGGCACGGGACACGACGCTGTCAACGATGAGCG
TAAACAATACTTAGCGCGTCAAGTGAGTCGTGGATTTGCTCTGCTTGCGA
AGGATTGGAGCGCTGATGGAGCCGAGCAGCGTGCAACCTGTTACAAGCCT
TTGCTGGAAGCTGTGGAACACGCGTATGAGGAAGCGGCACGTGCCTCCAG
ATCTTTGGCTCGAAAGGATTTCCGCGTGCTGGTACCAGGTGCGGGCGCGG
GGCGATTACCGTGGGAGTTGGTTCATCGTGGCTTTATGGTGGAAGGGTGT
GAGGCGAACGCAAGCGCACTGTTGGTCGGAAATTTCGTGCTCAACAACTG
TAGCCATGATGACGCTATCACGATGTATCCGTTTGCTCATGAGCACTCTA
ACGTGAGATCAAGGTCGCAGGCCACTCGCGGCGTGCTGGTGCCCGACGTG
AACCCCAAGGACATTCCGCCCCACACCGACTTTTCGATCCGCGCGGGCAG
TTTCTTGGACGCGTACGACGGGCACGACAGTAGCTGGGACGCTGTGGTGA
GCTCGATGGCATTCGACCTCGGCGAGTCGGTGATCGCGCACGTGCGCAGA
GTATCGCAAATTTTGAAACCAGGCGGCGTGTGGGCGTTCGTGGGACCCAT
GCCGTGCCTGGACGGCGGCCAGAACGACATGATTCACCTGTCGATTGGCG
AGTTCATGACGATAGTGAGAAAGGGCGGTTTCAAAATGGTGAAGCAGGAT
ATGGTTCGCTGCATGCATTCCAACGACCCCGCCTCCATGCGCGCGGTGCA
CGTGGAATGCCCTCTTGTAGTTGCTCTGAAGGTGCGACCAGCTCTCAAGT
GA
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