Gcaud2621.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2621.t1
Unique Name	Gcaud2621.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	753

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_205_length_37462_cov_4.544219	contig	NODE_205_length_37462_cov_4.544219:3955..6213 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703769.1
Preferred name	NSF
PFAMs	AAA,CDC48_2,CDC48_N
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K06027
KEGG TC	1.F.1.1
KEGG Pathway	ko04138,ko04721,ko04727,ko04962,map04138,map04721,map04727,map04962
GOs	GO:0002790,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005794,GO:0005886,GO:0005911,GO:0006810,GO:0006897,GO:0006909,GO:0006928,GO:0008104,GO:0008150,GO:0009306,GO:0009506,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030054,GO:0032940,GO:0033036,GO:0040011,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045184,GO:0046903,GO:0048870,GO:0051179,GO:0051234,GO:0051674,GO:0055044,GO:0071702,GO:0071705,GO:0071944,GO:0098657
Evalue	6.87e-280
EggNOG OGs	COG0464@1\|root,KOG0741@2759\|Eukaryota
EC	3.6.4.6
Description	SNARE complex disassembly
COG category	O
BRITE	ko00000,ko00001,ko01000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2621	Gcaud2621	Gracilaria caudata M_176_S67 male	gene	NODE_205_length_37462_cov_4.544219 3955..6213 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2621.t1.start1	Gcaud2621.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_205_length_37462_cov_4.544219 3955..3957 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2621.t1.CDS1	Gcaud2621.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_205_length_37462_cov_4.544219 3955..6213 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2621.t1.exon1	Gcaud2621.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_205_length_37462_cov_4.544219 3955..6213 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2621.t1.stop1	Gcaud2621.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_205_length_37462_cov_4.544219 6211..6213 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2621.t1	Gcaud2621.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_205_length_37462_cov_4.544219 3955..6213 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_205_length_37462_cov_4.544219:3955..6213+
coding sequence from alignment at NODE_205_length_37462_cov_4.544219:3955..6213+

mRNA sequence

>Gcaud2621.t1 ID=Gcaud2621.t1|Name=Gcaud2621.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=753bp
MSRWNFGSLGLSPATVKLIAASCPSNDLARTNKVFVNPSDLPSTTELAII
NTKFGYVVAAHNAVEPSKIGFNAIQRRELRLAIGDHVEITPFQWPKKISV
DCKAATFEIDLVSKKAGSIELDAEEVSPLCVRNLAGHIPTVGQSFVLDFY
GTSVLLKCSSLVSDGAVERAALTPETEFYFGKAPGSSVKIKGGDSRPKDV
FRSDFDFEKMGIGGLDKEFSDIFRRAFASRVFPPSVIQKLGIQHVKGMLL
YGPPGTGKTLIARQIGKMLNGKEPKVVNGPEILNKYVGQSEENIRNLFQD
AEAEYAENGDSSELHIIIFDEIDAICKQRGTTNSSSGVGDTVVNQLLSKI
DGVNALNNILVIGMTNRKDMIDEALLRPGRLEVHVEISLPDEAGRQQILR
IHTAKMKQNGMLDKGVSLGSLASQTKNYSGAEIEGLCKSAAAFALNRHVD
YRDLKKEVDTSGVLVTMNDFERALVEVQPAFGMGKDDFARCLLGGFLIHG
DRVRKSLNAGKLFRDEVATSDRSPLFSVLIEGPPGTGKTALAALLAVESG
FPFVRLITPESFVGYSDFSKCQALAKIFDDAHKSSLSVIVLDNIERIFEW
SPIGPRFTNSVLQTLMILTKQVPPKGRRLLILATTSNANVMEKLDYKQAF
SAVLSTKTLIREEIEAILDGTAESMNISQQADGNFASMHSSGLSPTYFRT
SRDREVAISLLENEQLGVKKLLMILNMARTTTPDGQTVMEMNRLHAVLED
VL*

spliced messenger RNA

>Gcaud2621.t1 ID=Gcaud2621.t1|Name=Gcaud2621.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2259bp|location=Sequence derived from alignment at NODE_205_length_37462_cov_4.544219:3955..6213+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCGATGGAACTTTGGAAGCCTTGGACTCAGCCCAGCAACTGTTAA
GCTTATCGCGGCGTCATGCCCGTCTAACGATTTAGCTAGAACTAACAAAG
TGTTCGTCAATCCATCAGATCTGCCTTCTACGACTGAGCTTGCGATTATC
AATACAAAGTTTGGCTACGTGGTGGCAGCTCACAACGCTGTCGAACCCTC
CAAAATCGGCTTTAATGCCATTCAACGCCGAGAACTTCGCCTAGCGATTG
GCGACCATGTCGAGATCACTCCGTTTCAGTGGCCAAAGAAGATTTCAGTT
GATTGCAAAGCGGCAACTTTCGAAATCGATCTTGTTTCAAAGAAGGCAGG
CTCAATTGAGTTAGATGCAGAAGAAGTGTCTCCTCTTTGCGTGCGAAACC
TCGCTGGACATATTCCTACAGTCGGCCAATCTTTTGTACTTGATTTCTAT
GGTACTTCAGTGCTGTTGAAATGCTCTTCATTAGTCTCTGATGGAGCTGT
TGAACGTGCGGCCTTGACGCCAGAAACTGAGTTCTACTTCGGGAAAGCAC
CTGGTTCCAGTGTTAAGATTAAAGGTGGCGACTCAAGACCAAAGGATGTT
TTTCGTTCAGACTTTGACTTCGAGAAGATGGGAATCGGCGGTCTCGATAA
GGAATTTTCCGACATTTTCCGGAGAGCGTTTGCTTCTCGTGTGTTTCCGC
CATCTGTGATTCAGAAATTGGGTATTCAACATGTGAAAGGTATGTTGCTT
TACGGGCCTCCAGGTACGGGTAAGACTCTTATTGCTCGGCAAATTGGCAA
GATGTTGAATGGAAAAGAGCCTAAGGTTGTGAACGGGCCAGAGATTCTCA
ACAAGTACGTCGGGCAAAGCGAAGAGAACATTCGAAACTTATTTCAAGAC
GCCGAGGCAGAATATGCGGAGAACGGGGACTCTTCTGAGCTTCATATAAT
CATCTTTGATGAGATCGATGCCATTTGCAAACAACGAGGAACGACTAATA
GCTCATCTGGTGTAGGGGATACAGTTGTTAACCAACTGCTATCCAAGATT
GATGGCGTTAATGCGTTGAACAATATTCTTGTTATTGGTATGACAAATCG
GAAGGACATGATAGACGAAGCATTACTGCGACCGGGTCGTTTGGAGGTGC
ATGTCGAAATCTCTTTGCCGGATGAAGCGGGACGGCAGCAGATTCTTCGG
ATTCACACAGCGAAGATGAAACAGAACGGAATGCTTGACAAAGGGGTGAG
TCTTGGAAGTTTGGCCTCCCAAACGAAGAACTACTCTGGAGCTGAAATCG
AAGGCCTGTGTAAGTCTGCGGCAGCATTTGCACTAAATCGCCATGTGGAC
TACAGGGATTTGAAGAAAGAGGTGGATACCTCTGGCGTTCTGGTGACAAT
GAACGACTTTGAGAGAGCACTTGTTGAAGTGCAGCCGGCTTTTGGTATGG
GTAAGGATGATTTCGCGCGCTGCTTACTTGGAGGGTTCCTTATTCATGGT
GACCGAGTTCGCAAATCACTGAACGCCGGTAAGCTTTTCAGGGACGAAGT
TGCGACATCAGACCGGTCACCGTTGTTTTCGGTCTTGATTGAAGGGCCTC
CTGGTACCGGTAAAACAGCTCTAGCAGCACTGCTGGCGGTGGAGTCAGGA
TTCCCGTTTGTGCGACTCATCACGCCCGAATCATTCGTTGGCTACTCGGA
CTTCTCAAAATGTCAGGCCTTGGCGAAAATTTTCGATGATGCGCACAAAT
CCTCTCTGTCCGTGATAGTTTTGGATAACATTGAGCGCATCTTTGAGTGG
TCTCCGATAGGGCCGCGATTTACGAACAGCGTTTTACAGACACTCATGAT
TCTCACGAAGCAGGTCCCACCGAAAGGAAGGCGCTTATTGATTCTGGCAA
CAACTAGTAATGCTAATGTGATGGAGAAGTTGGATTACAAGCAGGCGTTT
TCGGCAGTGTTATCAACGAAAACGCTGATCAGGGAAGAGATTGAAGCAAT
TCTGGATGGCACGGCGGAGTCGATGAATATAAGTCAGCAAGCCGACGGAA
ACTTTGCGTCCATGCATTCGTCAGGATTATCGCCAACTTATTTCAGAACT
TCGCGGGACAGGGAGGTAGCTATATCGTTGTTGGAAAACGAGCAGCTGGG
GGTGAAAAAGCTGCTGATGATTCTGAACATGGCCAGAACAACAACACCCG
ATGGACAGACCGTGATGGAGATGAATAGACTGCATGCGGTTCTGGAGGAC
GTGTTGTAG

protein sequence of Gcaud2621.t1

>Gcaud2621.t1 ID=Gcaud2621.t1|Name=Gcaud2621.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=753bp
MSRWNFGSLGLSPATVKLIAASCPSNDLARTNKVFVNPSDLPSTTELAII
NTKFGYVVAAHNAVEPSKIGFNAIQRRELRLAIGDHVEITPFQWPKKISV
DCKAATFEIDLVSKKAGSIELDAEEVSPLCVRNLAGHIPTVGQSFVLDFY
GTSVLLKCSSLVSDGAVERAALTPETEFYFGKAPGSSVKIKGGDSRPKDV
FRSDFDFEKMGIGGLDKEFSDIFRRAFASRVFPPSVIQKLGIQHVKGMLL
YGPPGTGKTLIARQIGKMLNGKEPKVVNGPEILNKYVGQSEENIRNLFQD
AEAEYAENGDSSELHIIIFDEIDAICKQRGTTNSSSGVGDTVVNQLLSKI
DGVNALNNILVIGMTNRKDMIDEALLRPGRLEVHVEISLPDEAGRQQILR
IHTAKMKQNGMLDKGVSLGSLASQTKNYSGAEIEGLCKSAAAFALNRHVD
YRDLKKEVDTSGVLVTMNDFERALVEVQPAFGMGKDDFARCLLGGFLIHG
DRVRKSLNAGKLFRDEVATSDRSPLFSVLIEGPPGTGKTALAALLAVESG
FPFVRLITPESFVGYSDFSKCQALAKIFDDAHKSSLSVIVLDNIERIFEW
SPIGPRFTNSVLQTLMILTKQVPPKGRRLLILATTSNANVMEKLDYKQAF
SAVLSTKTLIREEIEAILDGTAESMNISQQADGNFASMHSSGLSPTYFRT
SRDREVAISLLENEQLGVKKLLMILNMARTTTPDGQTVMEMNRLHAVLED
VL*

mRNA from alignment at NODE_205_length_37462_cov_4.544219:3955..6213+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2621.t1 ID=Gcaud2621.t1|Name=Gcaud2621.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2259bp|location=Sequence derived from alignment at NODE_205_length_37462_cov_4.544219:3955..6213+ (Gracilaria caudata M_176_S67 male)
ATGTCTCGATGGAACTTTGGAAGCCTTGGACTCAGCCCAGCAACTGTTAA
GCTTATCGCGGCGTCATGCCCGTCTAACGATTTAGCTAGAACTAACAAAG
TGTTCGTCAATCCATCAGATCTGCCTTCTACGACTGAGCTTGCGATTATC
AATACAAAGTTTGGCTACGTGGTGGCAGCTCACAACGCTGTCGAACCCTC
CAAAATCGGCTTTAATGCCATTCAACGCCGAGAACTTCGCCTAGCGATTG
GCGACCATGTCGAGATCACTCCGTTTCAGTGGCCAAAGAAGATTTCAGTT
GATTGCAAAGCGGCAACTTTCGAAATCGATCTTGTTTCAAAGAAGGCAGG
CTCAATTGAGTTAGATGCAGAAGAAGTGTCTCCTCTTTGCGTGCGAAACC
TCGCTGGACATATTCCTACAGTCGGCCAATCTTTTGTACTTGATTTCTAT
GGTACTTCAGTGCTGTTGAAATGCTCTTCATTAGTCTCTGATGGAGCTGT
TGAACGTGCGGCCTTGACGCCAGAAACTGAGTTCTACTTCGGGAAAGCAC
CTGGTTCCAGTGTTAAGATTAAAGGTGGCGACTCAAGACCAAAGGATGTT
TTTCGTTCAGACTTTGACTTCGAGAAGATGGGAATCGGCGGTCTCGATAA
GGAATTTTCCGACATTTTCCGGAGAGCGTTTGCTTCTCGTGTGTTTCCGC
CATCTGTGATTCAGAAATTGGGTATTCAACATGTGAAAGGTATGTTGCTT
TACGGGCCTCCAGGTACGGGTAAGACTCTTATTGCTCGGCAAATTGGCAA
GATGTTGAATGGAAAAGAGCCTAAGGTTGTGAACGGGCCAGAGATTCTCA
ACAAGTACGTCGGGCAAAGCGAAGAGAACATTCGAAACTTATTTCAAGAC
GCCGAGGCAGAATATGCGGAGAACGGGGACTCTTCTGAGCTTCATATAAT
CATCTTTGATGAGATCGATGCCATTTGCAAACAACGAGGAACGACTAATA
GCTCATCTGGTGTAGGGGATACAGTTGTTAACCAACTGCTATCCAAGATT
GATGGCGTTAATGCGTTGAACAATATTCTTGTTATTGGTATGACAAATCG
GAAGGACATGATAGACGAAGCATTACTGCGACCGGGTCGTTTGGAGGTGC
ATGTCGAAATCTCTTTGCCGGATGAAGCGGGACGGCAGCAGATTCTTCGG
ATTCACACAGCGAAGATGAAACAGAACGGAATGCTTGACAAAGGGGTGAG
TCTTGGAAGTTTGGCCTCCCAAACGAAGAACTACTCTGGAGCTGAAATCG
AAGGCCTGTGTAAGTCTGCGGCAGCATTTGCACTAAATCGCCATGTGGAC
TACAGGGATTTGAAGAAAGAGGTGGATACCTCTGGCGTTCTGGTGACAAT
GAACGACTTTGAGAGAGCACTTGTTGAAGTGCAGCCGGCTTTTGGTATGG
GTAAGGATGATTTCGCGCGCTGCTTACTTGGAGGGTTCCTTATTCATGGT
GACCGAGTTCGCAAATCACTGAACGCCGGTAAGCTTTTCAGGGACGAAGT
TGCGACATCAGACCGGTCACCGTTGTTTTCGGTCTTGATTGAAGGGCCTC
CTGGTACCGGTAAAACAGCTCTAGCAGCACTGCTGGCGGTGGAGTCAGGA
TTCCCGTTTGTGCGACTCATCACGCCCGAATCATTCGTTGGCTACTCGGA
CTTCTCAAAATGTCAGGCCTTGGCGAAAATTTTCGATGATGCGCACAAAT
CCTCTCTGTCCGTGATAGTTTTGGATAACATTGAGCGCATCTTTGAGTGG
TCTCCGATAGGGCCGCGATTTACGAACAGCGTTTTACAGACACTCATGAT
TCTCACGAAGCAGGTCCCACCGAAAGGAAGGCGCTTATTGATTCTGGCAA
CAACTAGTAATGCTAATGTGATGGAGAAGTTGGATTACAAGCAGGCGTTT
TCGGCAGTGTTATCAACGAAAACGCTGATCAGGGAAGAGATTGAAGCAAT
TCTGGATGGCACGGCGGAGTCGATGAATATAAGTCAGCAAGCCGACGGAA
ACTTTGCGTCCATGCATTCGTCAGGATTATCGCCAACTTATTTCAGAACT
TCGCGGGACAGGGAGGTAGCTATATCGTTGTTGGAAAACGAGCAGCTGGG
GGTGAAAAAGCTGCTGATGATTCTGAACATGGCCAGAACAACAACACCCG
ATGGACAGACCGTGATGGAGATGAATAGACTGCATGCGGTTCTGGAGGAC
GTGTTGTAG

Coding sequence (CDS) from alignment at NODE_205_length_37462_cov_4.544219:3955..6213+

>Gcaud2621.t1 ID=Gcaud2621.t1|Name=Gcaud2621.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2259bp|location=Sequence derived from alignment at NODE_205_length_37462_cov_4.544219:3955..6213+ (Gracilaria caudata M_176_S67 male)
ATGTCTCGATGGAACTTTGGAAGCCTTGGACTCAGCCCAGCAACTGTTAA
GCTTATCGCGGCGTCATGCCCGTCTAACGATTTAGCTAGAACTAACAAAG
TGTTCGTCAATCCATCAGATCTGCCTTCTACGACTGAGCTTGCGATTATC
AATACAAAGTTTGGCTACGTGGTGGCAGCTCACAACGCTGTCGAACCCTC
CAAAATCGGCTTTAATGCCATTCAACGCCGAGAACTTCGCCTAGCGATTG
GCGACCATGTCGAGATCACTCCGTTTCAGTGGCCAAAGAAGATTTCAGTT
GATTGCAAAGCGGCAACTTTCGAAATCGATCTTGTTTCAAAGAAGGCAGG
CTCAATTGAGTTAGATGCAGAAGAAGTGTCTCCTCTTTGCGTGCGAAACC
TCGCTGGACATATTCCTACAGTCGGCCAATCTTTTGTACTTGATTTCTAT
GGTACTTCAGTGCTGTTGAAATGCTCTTCATTAGTCTCTGATGGAGCTGT
TGAACGTGCGGCCTTGACGCCAGAAACTGAGTTCTACTTCGGGAAAGCAC
CTGGTTCCAGTGTTAAGATTAAAGGTGGCGACTCAAGACCAAAGGATGTT
TTTCGTTCAGACTTTGACTTCGAGAAGATGGGAATCGGCGGTCTCGATAA
GGAATTTTCCGACATTTTCCGGAGAGCGTTTGCTTCTCGTGTGTTTCCGC
CATCTGTGATTCAGAAATTGGGTATTCAACATGTGAAAGGTATGTTGCTT
TACGGGCCTCCAGGTACGGGTAAGACTCTTATTGCTCGGCAAATTGGCAA
GATGTTGAATGGAAAAGAGCCTAAGGTTGTGAACGGGCCAGAGATTCTCA
ACAAGTACGTCGGGCAAAGCGAAGAGAACATTCGAAACTTATTTCAAGAC
GCCGAGGCAGAATATGCGGAGAACGGGGACTCTTCTGAGCTTCATATAAT
CATCTTTGATGAGATCGATGCCATTTGCAAACAACGAGGAACGACTAATA
GCTCATCTGGTGTAGGGGATACAGTTGTTAACCAACTGCTATCCAAGATT
GATGGCGTTAATGCGTTGAACAATATTCTTGTTATTGGTATGACAAATCG
GAAGGACATGATAGACGAAGCATTACTGCGACCGGGTCGTTTGGAGGTGC
ATGTCGAAATCTCTTTGCCGGATGAAGCGGGACGGCAGCAGATTCTTCGG
ATTCACACAGCGAAGATGAAACAGAACGGAATGCTTGACAAAGGGGTGAG
TCTTGGAAGTTTGGCCTCCCAAACGAAGAACTACTCTGGAGCTGAAATCG
AAGGCCTGTGTAAGTCTGCGGCAGCATTTGCACTAAATCGCCATGTGGAC
TACAGGGATTTGAAGAAAGAGGTGGATACCTCTGGCGTTCTGGTGACAAT
GAACGACTTTGAGAGAGCACTTGTTGAAGTGCAGCCGGCTTTTGGTATGG
GTAAGGATGATTTCGCGCGCTGCTTACTTGGAGGGTTCCTTATTCATGGT
GACCGAGTTCGCAAATCACTGAACGCCGGTAAGCTTTTCAGGGACGAAGT
TGCGACATCAGACCGGTCACCGTTGTTTTCGGTCTTGATTGAAGGGCCTC
CTGGTACCGGTAAAACAGCTCTAGCAGCACTGCTGGCGGTGGAGTCAGGA
TTCCCGTTTGTGCGACTCATCACGCCCGAATCATTCGTTGGCTACTCGGA
CTTCTCAAAATGTCAGGCCTTGGCGAAAATTTTCGATGATGCGCACAAAT
CCTCTCTGTCCGTGATAGTTTTGGATAACATTGAGCGCATCTTTGAGTGG
TCTCCGATAGGGCCGCGATTTACGAACAGCGTTTTACAGACACTCATGAT
TCTCACGAAGCAGGTCCCACCGAAAGGAAGGCGCTTATTGATTCTGGCAA
CAACTAGTAATGCTAATGTGATGGAGAAGTTGGATTACAAGCAGGCGTTT
TCGGCAGTGTTATCAACGAAAACGCTGATCAGGGAAGAGATTGAAGCAAT
TCTGGATGGCACGGCGGAGTCGATGAATATAAGTCAGCAAGCCGACGGAA
ACTTTGCGTCCATGCATTCGTCAGGATTATCGCCAACTTATTTCAGAACT
TCGCGGGACAGGGAGGTAGCTATATCGTTGTTGGAAAACGAGCAGCTGGG
GGTGAAAAAGCTGCTGATGATTCTGAACATGGCCAGAACAACAACACCCG
ATGGACAGACCGTGATGGAGATGAATAGACTGCATGCGGTTCTGGAGGAC
GTGTTGTAG