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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 88036.EFJ22300 |
| PFAMs | GFO_IDH_MocA,GFO_IDH_MocA_C |
| Max annot lvl | 35493|Streptophyta |
| GOs | GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006740,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009987,GO:0016491,GO:0019362,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0046496,GO:0051186,GO:0055086,GO:0055114,GO:0071704,GO:0072524,GO:1901360,GO:1901564 |
| Evalue | 9.28e-17 |
| EggNOG OGs | COG0673@1|root,KOG2742@2759|Eukaryota,37MM9@33090|Viridiplantae,3GD1J@35493|Streptophyta |
| Description | Oxidoreductase family, NAD-binding Rossmann fold |
| COG category | KL |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud2618.t1.intron1 | Gcaud2618.t1.intron1 | Gracilaria caudata M_176_S67 male | intron | NODE_4221_length_2451_cov_7.056780 1800..1895 - |
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud2618.t1.start1 | Gcaud2618.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_4221_length_2451_cov_7.056780 2362..2364 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud2618.t1 ID=Gcaud2618.t1|Name=Gcaud2618.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=228bp
MILAEGIHVLAEKPLAADLKSARLLLQEPERSNAIHAIAENFRFEPVFKK
AHELLKGVCGNNISVQLMAQTPMPPGSRYGREWRLYLTGTGILLDGMVHH
IAGMRVVLGADITRVCAICMKPAQVFSGPDTVNGAVEFLQMECLGLYLSH
TQGIRFRKNEVTEEHLSFSGIDSEFREFIESCHSGAVHPDLDSEVAYNDL
ATVCALVSSSDLKQWVDVDHWECSNVIX back to topspliced messenger RNA >Gcaud2618.t1 ID=Gcaud2618.t1|Name=Gcaud2618.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=683bp|location=Sequence derived from alignment at NODE_4221_length_2451_cov_7.056780:1586..2364- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGATTCTCGCAGAAGGAATTCACGTTCTTGCGGAAAAGCCGCTTGCAGC
TGACCTAAAATCCGCAAGACTACTGTTACAGGAGCCTGAGAGGAGTAATG
CAATTCATGCCATAGCTGAAAACTTTCGTTTTGAGCCTGTGTTCAAGAAA
GCACACGAGCTCTTGAAAGGTGTATGTGGGAATAACATTTCTGTGCAGCT
TATGGCTCAAACCCCCATGCCACCAGGTAGCCGATACGGAAGAGAGTGGC
GCCTATATCTAACGGGTACAGGTATACTGCTCGATGGAATGGTTCATCAC
ATAGCCGGCATGAGGGTCGTTCTTGGAGCTGATATTACACGCGTCTGTGC
GATTTGCATGAAACCAGCTCAAGTGTTTTCTGGTCCTGACACTGTGAACG
GTGCAGTCGAATTTTTGCAAATGGAATGCCTGGGACTATATTTGTCACAT
ACGCAGGGAATACGTTTTCGAAAGAATGAAGTGACCGAGGAACACCTCTC
GTTCTCTGGAATCGACTCCGAATTTAGGGAGTTCATAGAATCTTGTCACA
GTGGTGCAGTTCATCCAGATTTGGATTCAGAAGTAGCCTATAATGATCTT
GCTACGGTATGCGCTCTTGTTTCATCTTCGGACCTCAAGCAATGGGTTGA
TGTCGATCACTGGGAGTGCAGTAATGTCATTTG back to topprotein sequence of Gcaud2618.t1 >Gcaud2618.t1 ID=Gcaud2618.t1|Name=Gcaud2618.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=228bp
MILAEGIHVLAEKPLAADLKSARLLLQEPERSNAIHAIAENFRFEPVFKK
AHELLKGVCGNNISVQLMAQTPMPPGSRYGREWRLYLTGTGILLDGMVHH
IAGMRVVLGADITRVCAICMKPAQVFSGPDTVNGAVEFLQMECLGLYLSH
TQGIRFRKNEVTEEHLSFSGIDSEFREFIESCHSGAVHPDLDSEVAYNDL
ATVCALVSSSDLKQWVDVDHWECSNVIX back to topmRNA from alignment at NODE_4221_length_2451_cov_7.056780:1586..2364- Legend: polypeptideCDSexonstart_codonintron Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud2618.t1 ID=Gcaud2618.t1|Name=Gcaud2618.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=779bp|location=Sequence derived from alignment at NODE_4221_length_2451_cov_7.056780:1586..2364- (Gracilaria caudata M_176_S67 male)
ATGATTCTCGCAGAAGGAATTCACGTTCTTGCGGAAAAGCCGCTTGCAGC
TGACCTAAAATCCGCAAGACTACTGTTACAGGAGCCTGAGAGGAGTAATG
CAATTCATGCCATAGCTGAAAACTTTCGTTTTGAGCCTGTGTTCAAGAAA
GCACACGAGCTCTTGAAAGGTGTATGTGGGAATAACATTTCTGTGCAGCT
TATGGCTCAAACCCCCATGCCACCAGGTAGCCGATACGGAAGAGAGTGGC
GCCTATATCTAACGGGTACAGGTATACTGCTCGATGGAATGGTTCATCAC
ATAGCCGGCATGAGGGTCGTTCTTGGAGCTGATATTACACGCGTCTGTGC
GATTTGCATGAAACCAGCTCAAGTGTTTTCTGGTCCTGACACTGTGAACG
GTGCAGTCGAATTTTTGCAAATGGAATGCCTGGGACTATATTTGTCACAT
ACGCAGGGAATACGTTTTCGTGGTTCTTAGAGTGATAGGAACTGCAGGAG
ACGTTGTTGTGCAAAGATCTTTTCCACGACCAGGGTACAGCTTTCGACAA
TTTGTAAGGTGAAAGGAAAGAATGAAGTGACCGAGGAACACCTCTCGTTC
TCTGGAATCGACTCCGAATTTAGGGAGTTCATAGAATCTTGTCACAGTGG
TGCAGTTCATCCAGATTTGGATTCAGAAGTAGCCTATAATGATCTTGCTA
CGGTATGCGCTCTTGTTTCATCTTCGGACCTCAAGCAATGGGTTGATGTC
GATCACTGGGAGTGCAGTAATGTCATTTG back to topCoding sequence (CDS) from alignment at NODE_4221_length_2451_cov_7.056780:1586..2364- >Gcaud2618.t1 ID=Gcaud2618.t1|Name=Gcaud2618.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=683bp|location=Sequence derived from alignment at NODE_4221_length_2451_cov_7.056780:1586..2364- (Gracilaria caudata M_176_S67 male)
ATGATTCTCGCAGAAGGAATTCACGTTCTTGCGGAAAAGCCGCTTGCAGC
TGACCTAAAATCCGCAAGACTACTGTTACAGGAGCCTGAGAGGAGTAATG
CAATTCATGCCATAGCTGAAAACTTTCGTTTTGAGCCTGTGTTCAAGAAA
GCACACGAGCTCTTGAAAGGTGTATGTGGGAATAACATTTCTGTGCAGCT
TATGGCTCAAACCCCCATGCCACCAGGTAGCCGATACGGAAGAGAGTGGC
GCCTATATCTAACGGGTACAGGTATACTGCTCGATGGAATGGTTCATCAC
ATAGCCGGCATGAGGGTCGTTCTTGGAGCTGATATTACACGCGTCTGTGC
GATTTGCATGAAACCAGCTCAAGTGTTTTCTGGTCCTGACACTGTGAACG
GTGCAGTCGAATTTTTGCAAATGGAATGCCTGGGACTATATTTGTCACAT
ACGCAGGGAATACGTTTTCGAAAGAATGAAGTGACCGAGGAACACCTCTC
GTTCTCTGGAATCGACTCCGAATTTAGGGAGTTCATAGAATCTTGTCACA
GTGGTGCAGTTCATCCAGATTTGGATTCAGAAGTAGCCTATAATGATCTT
GCTACGGTATGCGCTCTTGTTTCATCTTCGGACCTCAAGCAATGGGTTGA
TGTCGATCACTGGGAGTGCAGTAATGTCATTTG back to top
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