Gcaud2617.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2617.t1
Unique Name	Gcaud2617.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	424

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2616_length_5163_cov_4.087737	contig	NODE_2616_length_5163_cov_4.087737:3703..4974 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705872.1
PFAMs	PP2C
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K04403,ko:K14803,ko:K17500
KEGG Pathway	ko04010,ko04064,ko04380,ko04620,ko04621,ko04668,ko05140,ko05145,ko05168,ko05169,map04010,map04064,map04380,map04620,map04621,map04668,map05140,map05145,map05168,map05169
KEGG Module	M00686
Evalue	5.01e-76
EggNOG OGs	COG0631@1\|root,KOG0698@2759\|Eukaryota
EC	3.1.3.16
Description	protein serine/threonine phosphatase activity
COG category	T
BRITE	ko00000,ko00001,ko00002,ko01000,ko01009,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2617	Gcaud2617	Gracilaria caudata M_176_S67 male	gene	NODE_2616_length_5163_cov_4.087737 3703..4974 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2617.t1.stop1	Gcaud2617.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2616_length_5163_cov_4.087737 3703..3705 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2617.t1.CDS1	Gcaud2617.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2616_length_5163_cov_4.087737 3703..4974 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2617.t1.exon1	Gcaud2617.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2616_length_5163_cov_4.087737 3703..4974 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2617.t1.start1	Gcaud2617.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2616_length_5163_cov_4.087737 4972..4974 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2617.t1	Gcaud2617.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2616_length_5163_cov_4.087737 3703..4974 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2616_length_5163_cov_4.087737:3703..4974-
coding sequence from alignment at NODE_2616_length_5163_cov_4.087737:3703..4974-

mRNA sequence

>Gcaud2617.t1 ID=Gcaud2617.t1|Name=Gcaud2617.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=424bp
LDGELPPNAIRPDDPNNDLEEETLREGLIDFIPDAFTKPIDVSACSKAGW
EPLRDSAMPVAPMHTVEVRKENQDAFCALAPFVIVPTAPNDSKGQRQIFL
GVFDGHGAEGRPIAHYARDFIVATAREAAPSLAYAHSHKQHPVPAQLHRD
RLNVLKAAFSRAERALTESDPPIDHVFSGTTAVVSWMFGRDVYTAWTGDS
RCVIGRVWSVEHGRVRFKAIDLSHDQKPTRVDEKRRVRAAGGRIARWHRN
SGPLRVWLPRDWTPGLAMTRSIGDTVLSEYGVSPVPEVSYTTLSAHDSFI
VLASDGVWEFMTSQEVVEFIGRMRREGQSANDAAEALVREAVRRWRRNEV
VVDDTTAVVVWLALDDEGEEDKKSSDSPLSRHRRMFSMARARVGKHHSHG
VHIVCDDGHLAEFHCKNDLLQGM*

spliced messenger RNA

>Gcaud2617.t1 ID=Gcaud2617.t1|Name=Gcaud2617.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1272bp|location=Sequence derived from alignment at NODE_2616_length_5163_cov_4.087737:3703..4974- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGGACGGCGAGTTGCCGCCCAACGCCATCCGCCCCGATGACCCGAACAA
CGACCTCGAGGAGGAGACGCTGCGCGAGGGCTTGATCGACTTCATTCCCG
ACGCCTTCACCAAGCCCATCGACGTATCCGCCTGCTCCAAAGCCGGTTGG
GAACCCTTGCGAGATTCGGCTATGCCCGTTGCCCCGATGCATACCGTCGA
GGTTCGCAAGGAGAATCAGGACGCTTTTTGTGCCTTGGCCCCGTTTGTCA
TAGTTCCAACTGCCCCCAACGACTCCAAGGGCCAGCGTCAAATCTTTCTC
GGAGTGTTTGACGGCCACGGCGCGGAGGGGCGTCCAATTGCCCATTACGC
GCGCGATTTCATCGTGGCTACCGCGCGCGAGGCCGCACCCTCACTTGCTT
ACGCCCACTCGCACAAGCAACACCCGGTGCCCGCGCAGCTGCACCGCGAC
CGTCTCAACGTGCTCAAGGCCGCCTTCTCACGCGCCGAGCGCGCTCTCAC
CGAGTCCGACCCGCCCATTGACCACGTGTTTTCCGGCACCACCGCCGTGG
TGTCGTGGATGTTTGGACGCGACGTCTACACCGCGTGGACTGGCGACTCT
AGATGTGTGATTGGAAGAGTGTGGTCCGTGGAACATGGACGAGTGCGTTT
CAAGGCGATTGACCTCAGTCATGATCAGAAACCTACGCGCGTGGACGAGA
AGCGTCGCGTGCGTGCCGCTGGGGGCCGAATCGCGAGGTGGCATAGAAAT
TCTGGGCCGTTACGTGTGTGGTTGCCGCGTGACTGGACGCCTGGATTGGC
TATGACGCGCAGCATCGGGGACACCGTGTTGAGCGAGTATGGTGTGAGCC
CGGTTCCGGAGGTTTCGTACACCACTTTGAGCGCACATGACAGCTTTATT
GTACTTGCTAGTGATGGGGTGTGGGAGTTCATGACCAGCCAGGAAGTGGT
GGAGTTCATCGGGCGCATGCGGAGAGAAGGGCAGAGCGCTAATGATGCTG
CTGAAGCACTTGTACGGGAGGCAGTGCGGAGGTGGCGGCGCAACGAAGTG
GTTGTAGATGACACAACGGCTGTGGTGGTGTGGCTGGCACTGGATGATGA
GGGCGAGGAAGACAAGAAGTCAAGCGATTCGCCGTTGTCAAGACATCGAA
GGATGTTCTCGATGGCGAGAGCAAGAGTGGGGAAACATCACTCGCACGGT
GTGCATATTGTGTGCGATGACGGACATCTGGCGGAGTTCCATTGTAAGAA
TGATCTTTTGCAAGGCATGTGA

protein sequence of Gcaud2617.t1

>Gcaud2617.t1 ID=Gcaud2617.t1|Name=Gcaud2617.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=424bp
LDGELPPNAIRPDDPNNDLEEETLREGLIDFIPDAFTKPIDVSACSKAGW
EPLRDSAMPVAPMHTVEVRKENQDAFCALAPFVIVPTAPNDSKGQRQIFL
GVFDGHGAEGRPIAHYARDFIVATAREAAPSLAYAHSHKQHPVPAQLHRD
RLNVLKAAFSRAERALTESDPPIDHVFSGTTAVVSWMFGRDVYTAWTGDS
RCVIGRVWSVEHGRVRFKAIDLSHDQKPTRVDEKRRVRAAGGRIARWHRN
SGPLRVWLPRDWTPGLAMTRSIGDTVLSEYGVSPVPEVSYTTLSAHDSFI
VLASDGVWEFMTSQEVVEFIGRMRREGQSANDAAEALVREAVRRWRRNEV
VVDDTTAVVVWLALDDEGEEDKKSSDSPLSRHRRMFSMARARVGKHHSHG
VHIVCDDGHLAEFHCKNDLLQGM*

mRNA from alignment at NODE_2616_length_5163_cov_4.087737:3703..4974-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2617.t1 ID=Gcaud2617.t1|Name=Gcaud2617.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1272bp|location=Sequence derived from alignment at NODE_2616_length_5163_cov_4.087737:3703..4974- (Gracilaria caudata M_176_S67 male)
CTGGACGGCGAGTTGCCGCCCAACGCCATCCGCCCCGATGACCCGAACAA
CGACCTCGAGGAGGAGACGCTGCGCGAGGGCTTGATCGACTTCATTCCCG
ACGCCTTCACCAAGCCCATCGACGTATCCGCCTGCTCCAAAGCCGGTTGG
GAACCCTTGCGAGATTCGGCTATGCCCGTTGCCCCGATGCATACCGTCGA
GGTTCGCAAGGAGAATCAGGACGCTTTTTGTGCCTTGGCCCCGTTTGTCA
TAGTTCCAACTGCCCCCAACGACTCCAAGGGCCAGCGTCAAATCTTTCTC
GGAGTGTTTGACGGCCACGGCGCGGAGGGGCGTCCAATTGCCCATTACGC
GCGCGATTTCATCGTGGCTACCGCGCGCGAGGCCGCACCCTCACTTGCTT
ACGCCCACTCGCACAAGCAACACCCGGTGCCCGCGCAGCTGCACCGCGAC
CGTCTCAACGTGCTCAAGGCCGCCTTCTCACGCGCCGAGCGCGCTCTCAC
CGAGTCCGACCCGCCCATTGACCACGTGTTTTCCGGCACCACCGCCGTGG
TGTCGTGGATGTTTGGACGCGACGTCTACACCGCGTGGACTGGCGACTCT
AGATGTGTGATTGGAAGAGTGTGGTCCGTGGAACATGGACGAGTGCGTTT
CAAGGCGATTGACCTCAGTCATGATCAGAAACCTACGCGCGTGGACGAGA
AGCGTCGCGTGCGTGCCGCTGGGGGCCGAATCGCGAGGTGGCATAGAAAT
TCTGGGCCGTTACGTGTGTGGTTGCCGCGTGACTGGACGCCTGGATTGGC
TATGACGCGCAGCATCGGGGACACCGTGTTGAGCGAGTATGGTGTGAGCC
CGGTTCCGGAGGTTTCGTACACCACTTTGAGCGCACATGACAGCTTTATT
GTACTTGCTAGTGATGGGGTGTGGGAGTTCATGACCAGCCAGGAAGTGGT
GGAGTTCATCGGGCGCATGCGGAGAGAAGGGCAGAGCGCTAATGATGCTG
CTGAAGCACTTGTACGGGAGGCAGTGCGGAGGTGGCGGCGCAACGAAGTG
GTTGTAGATGACACAACGGCTGTGGTGGTGTGGCTGGCACTGGATGATGA
GGGCGAGGAAGACAAGAAGTCAAGCGATTCGCCGTTGTCAAGACATCGAA
GGATGTTCTCGATGGCGAGAGCAAGAGTGGGGAAACATCACTCGCACGGT
GTGCATATTGTGTGCGATGACGGACATCTGGCGGAGTTCCATTGTAAGAA
TGATCTTTTGCAAGGCATGTGA

Coding sequence (CDS) from alignment at NODE_2616_length_5163_cov_4.087737:3703..4974-

>Gcaud2617.t1 ID=Gcaud2617.t1|Name=Gcaud2617.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1272bp|location=Sequence derived from alignment at NODE_2616_length_5163_cov_4.087737:3703..4974- (Gracilaria caudata M_176_S67 male)
CTGGACGGCGAGTTGCCGCCCAACGCCATCCGCCCCGATGACCCGAACAA
CGACCTCGAGGAGGAGACGCTGCGCGAGGGCTTGATCGACTTCATTCCCG
ACGCCTTCACCAAGCCCATCGACGTATCCGCCTGCTCCAAAGCCGGTTGG
GAACCCTTGCGAGATTCGGCTATGCCCGTTGCCCCGATGCATACCGTCGA
GGTTCGCAAGGAGAATCAGGACGCTTTTTGTGCCTTGGCCCCGTTTGTCA
TAGTTCCAACTGCCCCCAACGACTCCAAGGGCCAGCGTCAAATCTTTCTC
GGAGTGTTTGACGGCCACGGCGCGGAGGGGCGTCCAATTGCCCATTACGC
GCGCGATTTCATCGTGGCTACCGCGCGCGAGGCCGCACCCTCACTTGCTT
ACGCCCACTCGCACAAGCAACACCCGGTGCCCGCGCAGCTGCACCGCGAC
CGTCTCAACGTGCTCAAGGCCGCCTTCTCACGCGCCGAGCGCGCTCTCAC
CGAGTCCGACCCGCCCATTGACCACGTGTTTTCCGGCACCACCGCCGTGG
TGTCGTGGATGTTTGGACGCGACGTCTACACCGCGTGGACTGGCGACTCT
AGATGTGTGATTGGAAGAGTGTGGTCCGTGGAACATGGACGAGTGCGTTT
CAAGGCGATTGACCTCAGTCATGATCAGAAACCTACGCGCGTGGACGAGA
AGCGTCGCGTGCGTGCCGCTGGGGGCCGAATCGCGAGGTGGCATAGAAAT
TCTGGGCCGTTACGTGTGTGGTTGCCGCGTGACTGGACGCCTGGATTGGC
TATGACGCGCAGCATCGGGGACACCGTGTTGAGCGAGTATGGTGTGAGCC
CGGTTCCGGAGGTTTCGTACACCACTTTGAGCGCACATGACAGCTTTATT
GTACTTGCTAGTGATGGGGTGTGGGAGTTCATGACCAGCCAGGAAGTGGT
GGAGTTCATCGGGCGCATGCGGAGAGAAGGGCAGAGCGCTAATGATGCTG
CTGAAGCACTTGTACGGGAGGCAGTGCGGAGGTGGCGGCGCAACGAAGTG
GTTGTAGATGACACAACGGCTGTGGTGGTGTGGCTGGCACTGGATGATGA
GGGCGAGGAAGACAAGAAGTCAAGCGATTCGCCGTTGTCAAGACATCGAA
GGATGTTCTCGATGGCGAGAGCAAGAGTGGGGAAACATCACTCGCACGGT
GTGCATATTGTGTGCGATGACGGACATCTGGCGGAGTTCCATTGTAAGAA
TGATCTTTTGCAAGGCATGTGA