Gcaud2615.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2615.t1
Unique Name	Gcaud2615.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	352

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2616_length_5163_cov_4.087737	contig	NODE_2616_length_5163_cov_4.087737:2..1055 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2615	Gcaud2615	Gracilaria caudata M_176_S67 male	gene	NODE_2616_length_5163_cov_4.087737 2..1055 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2615.t1.CDS1	Gcaud2615.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2616_length_5163_cov_4.087737 2..1055 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2615.t1.exon1	Gcaud2615.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2616_length_5163_cov_4.087737 2..1055 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2615.t1.stop1	Gcaud2615.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2616_length_5163_cov_4.087737 1053..1055 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2615.t1	Gcaud2615.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2616_length_5163_cov_4.087737 2..1055 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2616_length_5163_cov_4.087737:2..1055+
coding sequence from alignment at NODE_2616_length_5163_cov_4.087737:2..1055+

mRNA sequence

>Gcaud2615.t1 ID=Gcaud2615.t1|Name=Gcaud2615.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=352bp
XMQSVALVTDHRAQDDQPTCLRLSFRLEGARRRPHCIQLSVPSQHVSLQT
EHTSFQTFATALTVPSCPPSTSITLRLLNKNTILAAIPITYAALCSSLHL
RLKTPHGVIHALAAPHTPELATLRANLRVSSRGILNAARLSIIGDCVVSL
RYLWNGIWVQFYRSSTPHETQAGGELLSYGPEHGADTHIRIEAYRMTNTR
IHLVASVDTTLQHLLQINRQLPLLQNFASKGYVKTRDAQVDKCTARVALE
VFLYARPPDTGVPLPLTQTETETNPMYQSIPPGMTMRPSDFKHAAHKYDF
RAPGLRNFFRGLLGMNRRKKLQQAALMIARAVENDASANRSNTKQHIRSS
P*

spliced messenger RNA

>Gcaud2615.t1 ID=Gcaud2615.t1|Name=Gcaud2615.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1054bp|location=Sequence derived from alignment at NODE_2616_length_5163_cov_4.087737:2..1055+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CATGCAGTCTGTCGCGCTCGTCACAGACCACCGCGCGCAAGACGACCAGC
CCACCTGTCTGCGCCTCTCCTTCCGCCTGGAGGGTGCTCGTCGTCGCCCG
CACTGCATCCAACTCTCCGTGCCCTCGCAGCACGTTTCGTTGCAAACCGA
GCACACCTCCTTTCAAACCTTCGCAACCGCCCTCACTGTCCCGTCCTGTC
CGCCATCCACTTCAATAACTCTGCGTCTGCTCAACAAGAACACCATCCTC
GCCGCCATCCCCATCACCTACGCTGCCCTCTGCTCCTCTCTTCATCTTCG
CCTTAAGACACCGCACGGCGTAATCCACGCGCTAGCCGCCCCTCACACCC
CGGAACTGGCTACCTTGCGCGCCAACTTGCGCGTTTCATCGCGGGGAATT
TTGAATGCCGCGCGTCTCTCCATCATTGGCGATTGCGTCGTATCGCTGAG
ATATCTCTGGAACGGTATCTGGGTTCAATTCTACCGCTCCTCTACTCCGC
ATGAAACTCAAGCCGGCGGCGAGCTGCTGTCGTATGGACCAGAACATGGT
GCTGACACACACATCCGCATCGAAGCGTACCGAATGACCAACACTCGCAT
TCATCTCGTCGCTTCTGTTGATACCACTCTGCAGCACTTGCTACAAATTA
ACCGTCAACTTCCGCTGCTCCAAAACTTCGCGTCCAAGGGATACGTCAAG
ACCAGAGATGCGCAGGTGGATAAATGCACCGCTCGCGTCGCGTTGGAAGT
GTTCCTATACGCTCGTCCTCCAGACACCGGCGTGCCGTTGCCCTTGACTC
AAACCGAAACAGAAACTAACCCAATGTATCAATCAATTCCACCTGGTATG
ACCATGAGACCGTCGGACTTCAAACACGCAGCACATAAGTACGACTTTCG
TGCACCTGGTCTACGCAATTTCTTCAGGGGTTTGCTTGGTATGAACAGAC
GAAAGAAGCTTCAACAAGCTGCGCTCATGATTGCACGCGCCGTTGAGAAT
GATGCTAGTGCCAATCGTTCCAACACAAAACAACACATTCGTTCTTCACC
TTAG

protein sequence of Gcaud2615.t1

>Gcaud2615.t1 ID=Gcaud2615.t1|Name=Gcaud2615.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=352bp
XMQSVALVTDHRAQDDQPTCLRLSFRLEGARRRPHCIQLSVPSQHVSLQT
EHTSFQTFATALTVPSCPPSTSITLRLLNKNTILAAIPITYAALCSSLHL
RLKTPHGVIHALAAPHTPELATLRANLRVSSRGILNAARLSIIGDCVVSL
RYLWNGIWVQFYRSSTPHETQAGGELLSYGPEHGADTHIRIEAYRMTNTR
IHLVASVDTTLQHLLQINRQLPLLQNFASKGYVKTRDAQVDKCTARVALE
VFLYARPPDTGVPLPLTQTETETNPMYQSIPPGMTMRPSDFKHAAHKYDF
RAPGLRNFFRGLLGMNRRKKLQQAALMIARAVENDASANRSNTKQHIRSS
P*

mRNA from alignment at NODE_2616_length_5163_cov_4.087737:2..1055+

Legend: CDSpolypeptideexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2615.t1 ID=Gcaud2615.t1|Name=Gcaud2615.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1054bp|location=Sequence derived from alignment at NODE_2616_length_5163_cov_4.087737:2..1055+ (Gracilaria caudata M_176_S67 male)
CATGCAGTCTGTCGCGCTCGTCACAGACCACCGCGCGCAAGACGACCAGC
CCACCTGTCTGCGCCTCTCCTTCCGCCTGGAGGGTGCTCGTCGTCGCCCG
CACTGCATCCAACTCTCCGTGCCCTCGCAGCACGTTTCGTTGCAAACCGA
GCACACCTCCTTTCAAACCTTCGCAACCGCCCTCACTGTCCCGTCCTGTC
CGCCATCCACTTCAATAACTCTGCGTCTGCTCAACAAGAACACCATCCTC
GCCGCCATCCCCATCACCTACGCTGCCCTCTGCTCCTCTCTTCATCTTCG
CCTTAAGACACCGCACGGCGTAATCCACGCGCTAGCCGCCCCTCACACCC
CGGAACTGGCTACCTTGCGCGCCAACTTGCGCGTTTCATCGCGGGGAATT
TTGAATGCCGCGCGTCTCTCCATCATTGGCGATTGCGTCGTATCGCTGAG
ATATCTCTGGAACGGTATCTGGGTTCAATTCTACCGCTCCTCTACTCCGC
ATGAAACTCAAGCCGGCGGCGAGCTGCTGTCGTATGGACCAGAACATGGT
GCTGACACACACATCCGCATCGAAGCGTACCGAATGACCAACACTCGCAT
TCATCTCGTCGCTTCTGTTGATACCACTCTGCAGCACTTGCTACAAATTA
ACCGTCAACTTCCGCTGCTCCAAAACTTCGCGTCCAAGGGATACGTCAAG
ACCAGAGATGCGCAGGTGGATAAATGCACCGCTCGCGTCGCGTTGGAAGT
GTTCCTATACGCTCGTCCTCCAGACACCGGCGTGCCGTTGCCCTTGACTC
AAACCGAAACAGAAACTAACCCAATGTATCAATCAATTCCACCTGGTATG
ACCATGAGACCGTCGGACTTCAAACACGCAGCACATAAGTACGACTTTCG
TGCACCTGGTCTACGCAATTTCTTCAGGGGTTTGCTTGGTATGAACAGAC
GAAAGAAGCTTCAACAAGCTGCGCTCATGATTGCACGCGCCGTTGAGAAT
GATGCTAGTGCCAATCGTTCCAACACAAAACAACACATTCGTTCTTCACC
TTAG

Coding sequence (CDS) from alignment at NODE_2616_length_5163_cov_4.087737:2..1055+

>Gcaud2615.t1 ID=Gcaud2615.t1|Name=Gcaud2615.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1054bp|location=Sequence derived from alignment at NODE_2616_length_5163_cov_4.087737:2..1055+ (Gracilaria caudata M_176_S67 male)
CATGCAGTCTGTCGCGCTCGTCACAGACCACCGCGCGCAAGACGACCAGC
CCACCTGTCTGCGCCTCTCCTTCCGCCTGGAGGGTGCTCGTCGTCGCCCG
CACTGCATCCAACTCTCCGTGCCCTCGCAGCACGTTTCGTTGCAAACCGA
GCACACCTCCTTTCAAACCTTCGCAACCGCCCTCACTGTCCCGTCCTGTC
CGCCATCCACTTCAATAACTCTGCGTCTGCTCAACAAGAACACCATCCTC
GCCGCCATCCCCATCACCTACGCTGCCCTCTGCTCCTCTCTTCATCTTCG
CCTTAAGACACCGCACGGCGTAATCCACGCGCTAGCCGCCCCTCACACCC
CGGAACTGGCTACCTTGCGCGCCAACTTGCGCGTTTCATCGCGGGGAATT
TTGAATGCCGCGCGTCTCTCCATCATTGGCGATTGCGTCGTATCGCTGAG
ATATCTCTGGAACGGTATCTGGGTTCAATTCTACCGCTCCTCTACTCCGC
ATGAAACTCAAGCCGGCGGCGAGCTGCTGTCGTATGGACCAGAACATGGT
GCTGACACACACATCCGCATCGAAGCGTACCGAATGACCAACACTCGCAT
TCATCTCGTCGCTTCTGTTGATACCACTCTGCAGCACTTGCTACAAATTA
ACCGTCAACTTCCGCTGCTCCAAAACTTCGCGTCCAAGGGATACGTCAAG
ACCAGAGATGCGCAGGTGGATAAATGCACCGCTCGCGTCGCGTTGGAAGT
GTTCCTATACGCTCGTCCTCCAGACACCGGCGTGCCGTTGCCCTTGACTC
AAACCGAAACAGAAACTAACCCAATGTATCAATCAATTCCACCTGGTATG
ACCATGAGACCGTCGGACTTCAAACACGCAGCACATAAGTACGACTTTCG
TGCACCTGGTCTACGCAATTTCTTCAGGGGTTTGCTTGGTATGAACAGAC
GAAAGAAGCTTCAACAAGCTGCGCTCATGATTGCACGCGCCGTTGAGAAT
GATGCTAGTGCCAATCGTTCCAACACAAAACAACACATTCGTTCTTCACC
TTAG