Gcaud2614.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2614.t1
Unique Name	Gcaud2614.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	484

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_972_length_15628_cov_3.908026	contig	NODE_972_length_15628_cov_3.908026:11898..13349 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMN061CT
Preferred name	ned1
PFAMs	LNS2,Lipin_N,Lipin_mid
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00017
KEGG ko	ko:K15728
KEGG Reaction	R02239
KEGG Pathway	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110
GOs	GO:0000287,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003712,GO:0003713,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005773,GO:0005811,GO:0005829,GO:0006082,GO:0006091,GO:0006276,GO:0006355,GO:0006357,GO:0006629,GO:0006631,GO:0006638,GO:0006639,GO:0006641,GO:0006644,GO:0006793,GO:0006796,GO:0006996,GO:0006997,GO:0006998,GO:0007029,GO:0007033,GO:0008150,GO:0008152,GO:0008195,GO:0008610,GO:0008654,GO:0009056,GO:0009058,GO:0009060,GO:0009062,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0012505,GO:0015980,GO:0016020,GO:0016042,GO:0016043,GO:0016054,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019219,GO:0019222,GO:0019432,GO:0019637,GO:0019752,GO:0019898,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031965,GO:0031967,GO:0031975,GO:0032787,GO:0034389,GO:0042144,GO:0042578,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043436,GO:0044212,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0045333,GO:0045893,GO:0045935,GO:0045944,GO:0046395,GO:0046460,GO:0046463,GO:0046486,GO:0046872,GO:0048284,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0055114,GO:0060255,GO:0061024,GO:0061025,GO:0065007,GO:0071704,GO:0071763,GO:0071840,GO:0072329,GO:0080090,GO:0090407,GO:0097159,GO:0097576,GO:0140110,GO:1901363,GO:1901575,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Evalue	1.37e-81
EggNOG OGs	COG5083@1\|root,KOG2116@2759\|Eukaryota
EC	3.1.3.4
Description	phosphatidate phosphatase activity
COG category	C
BRITE	ko00000,ko00001,ko01000,ko01009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2614	Gcaud2614	Gracilaria caudata M_176_S67 male	gene	NODE_972_length_15628_cov_3.908026 11898..13349 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2614.t1.stop1	Gcaud2614.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_972_length_15628_cov_3.908026 11898..11900 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2614.t1.CDS1	Gcaud2614.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_972_length_15628_cov_3.908026 11898..13349 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2614.t1.exon1	Gcaud2614.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_972_length_15628_cov_3.908026 11898..13349 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2614.t1.start1	Gcaud2614.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_972_length_15628_cov_3.908026 13347..13349 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2614.t1	Gcaud2614.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_972_length_15628_cov_3.908026 11898..13349 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_972_length_15628_cov_3.908026:11898..13349-
coding sequence from alignment at NODE_972_length_15628_cov_3.908026:11898..13349-

mRNA sequence

>Gcaud2614.t1 ID=Gcaud2614.t1|Name=Gcaud2614.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=484bp
MTSEQSLSLFDEHRIPYEHFINNPEILYDPSLMFRIQDRLVSLKIAAPYV
FSAASFREQPDLDALTERVMREGEATDEAPKQPPPTPARRFRWFSWSNAP
AESNSNSNSNSNSAEERKDAENGEKAAPENRDVDGVADFQLDAGAPATAE
GEEQREILPQEESKAAQARSEQKEQRVNVQSEQAERSADTKESNDTPLET
ANVEVPGMISFSDIDPNSLSLIPTSEQLMQLELKPGANTIRFIVQSSSVE
LNCRIFLWSCHTKIVISDVDGTITRSDVLGHLLPAVGRDWSQVGVAGLYS
QIEKNGYKILYLTARPIGQASQTRAFLHSVTQGSAKLPNGPVLMSPNRLV
ESFAREVIRRRPHEFKIAALREVRSLFSPDYNPFHAGFGNRETDVISYRA
VGLIPQRIFVVNTRGELAVMKARYESTASYSSLQDLVENVFPDISGRTGF
EMIRAITDTATFNDWKWWKGSLPEVDFDALLGE*

spliced messenger RNA

>Gcaud2614.t1 ID=Gcaud2614.t1|Name=Gcaud2614.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1452bp|location=Sequence derived from alignment at NODE_972_length_15628_cov_3.908026:11898..13349- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTAGCGAGCAGTCGCTAAGCTTGTTTGATGAACATCGGATACCTTA
CGAGCACTTCATCAACAACCCTGAAATTTTGTACGACCCGTCGCTCATGT
TTCGCATCCAAGACAGACTGGTCAGCCTTAAAATCGCTGCGCCGTACGTG
TTCTCCGCAGCGTCGTTCAGAGAGCAACCGGATCTGGATGCACTCACAGA
ACGCGTGATGCGCGAGGGCGAAGCCACTGATGAGGCGCCCAAACAACCTC
CCCCCACGCCGGCGCGTCGTTTTCGATGGTTCTCGTGGTCCAATGCGCCG
GCTGAGAGCAACAGCAACAGCAACAGCAACAGCAACAGTGCCGAAGAACG
TAAAGACGCCGAAAATGGTGAAAAAGCGGCGCCAGAGAACAGAGACGTAG
ACGGCGTGGCCGATTTTCAGCTGGACGCCGGCGCCCCTGCCACAGCTGAA
GGTGAGGAACAGCGCGAAATATTACCACAAGAAGAGAGCAAAGCAGCACA
AGCGCGCTCAGAGCAAAAGGAGCAGCGCGTCAACGTTCAAAGCGAACAAG
CAGAGCGCAGCGCAGATACAAAAGAATCGAATGACACTCCGCTAGAGACG
GCAAACGTAGAGGTGCCGGGTATGATATCGTTCTCAGATATTGATCCAAA
TTCTTTGTCGTTGATACCCACATCGGAGCAATTGATGCAACTAGAACTGA
AACCCGGTGCAAATACAATACGCTTTATTGTACAATCCAGTTCGGTGGAA
CTCAACTGTCGCATATTTCTGTGGAGCTGTCACACGAAGATTGTGATATC
TGACGTGGACGGCACCATTACGCGCAGTGATGTGCTGGGTCATCTGCTGC
CGGCTGTGGGTCGCGACTGGAGCCAGGTGGGAGTGGCCGGTTTATACTCT
CAGATTGAGAAGAATGGGTACAAGATTCTGTATCTGACGGCGAGACCGAT
TGGACAGGCGAGTCAGACCAGAGCGTTCCTGCATAGCGTGACGCAGGGCA
GCGCAAAGCTTCCAAACGGACCAGTTTTGATGAGCCCCAACCGGCTGGTG
GAGAGCTTTGCGCGCGAGGTGATTCGACGACGTCCGCATGAGTTTAAGAT
CGCGGCGTTGCGAGAAGTGCGTAGCTTGTTCTCTCCGGATTACAACCCGT
TTCATGCGGGGTTTGGCAATCGTGAGACGGATGTGATCTCGTACAGAGCG
GTGGGATTGATTCCGCAGCGCATTTTTGTGGTGAACACTCGAGGAGAGTT
GGCGGTGATGAAGGCGCGCTACGAAAGCACGGCGTCGTATAGCTCGCTGC
AGGATTTGGTGGAAAATGTGTTTCCGGACATATCGGGACGCACTGGCTTT
GAGATGATTCGTGCAATCACGGACACTGCGACGTTCAATGACTGGAAGTG
GTGGAAAGGGTCGCTTCCGGAGGTGGATTTCGATGCGTTGCTCGGTGAAT
AG

protein sequence of Gcaud2614.t1

>Gcaud2614.t1 ID=Gcaud2614.t1|Name=Gcaud2614.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=484bp
MTSEQSLSLFDEHRIPYEHFINNPEILYDPSLMFRIQDRLVSLKIAAPYV
FSAASFREQPDLDALTERVMREGEATDEAPKQPPPTPARRFRWFSWSNAP
AESNSNSNSNSNSAEERKDAENGEKAAPENRDVDGVADFQLDAGAPATAE
GEEQREILPQEESKAAQARSEQKEQRVNVQSEQAERSADTKESNDTPLET
ANVEVPGMISFSDIDPNSLSLIPTSEQLMQLELKPGANTIRFIVQSSSVE
LNCRIFLWSCHTKIVISDVDGTITRSDVLGHLLPAVGRDWSQVGVAGLYS
QIEKNGYKILYLTARPIGQASQTRAFLHSVTQGSAKLPNGPVLMSPNRLV
ESFAREVIRRRPHEFKIAALREVRSLFSPDYNPFHAGFGNRETDVISYRA
VGLIPQRIFVVNTRGELAVMKARYESTASYSSLQDLVENVFPDISGRTGF
EMIRAITDTATFNDWKWWKGSLPEVDFDALLGE*

mRNA from alignment at NODE_972_length_15628_cov_3.908026:11898..13349-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2614.t1 ID=Gcaud2614.t1|Name=Gcaud2614.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1452bp|location=Sequence derived from alignment at NODE_972_length_15628_cov_3.908026:11898..13349- (Gracilaria caudata M_176_S67 male)
ATGACTAGCGAGCAGTCGCTAAGCTTGTTTGATGAACATCGGATACCTTA
CGAGCACTTCATCAACAACCCTGAAATTTTGTACGACCCGTCGCTCATGT
TTCGCATCCAAGACAGACTGGTCAGCCTTAAAATCGCTGCGCCGTACGTG
TTCTCCGCAGCGTCGTTCAGAGAGCAACCGGATCTGGATGCACTCACAGA
ACGCGTGATGCGCGAGGGCGAAGCCACTGATGAGGCGCCCAAACAACCTC
CCCCCACGCCGGCGCGTCGTTTTCGATGGTTCTCGTGGTCCAATGCGCCG
GCTGAGAGCAACAGCAACAGCAACAGCAACAGCAACAGTGCCGAAGAACG
TAAAGACGCCGAAAATGGTGAAAAAGCGGCGCCAGAGAACAGAGACGTAG
ACGGCGTGGCCGATTTTCAGCTGGACGCCGGCGCCCCTGCCACAGCTGAA
GGTGAGGAACAGCGCGAAATATTACCACAAGAAGAGAGCAAAGCAGCACA
AGCGCGCTCAGAGCAAAAGGAGCAGCGCGTCAACGTTCAAAGCGAACAAG
CAGAGCGCAGCGCAGATACAAAAGAATCGAATGACACTCCGCTAGAGACG
GCAAACGTAGAGGTGCCGGGTATGATATCGTTCTCAGATATTGATCCAAA
TTCTTTGTCGTTGATACCCACATCGGAGCAATTGATGCAACTAGAACTGA
AACCCGGTGCAAATACAATACGCTTTATTGTACAATCCAGTTCGGTGGAA
CTCAACTGTCGCATATTTCTGTGGAGCTGTCACACGAAGATTGTGATATC
TGACGTGGACGGCACCATTACGCGCAGTGATGTGCTGGGTCATCTGCTGC
CGGCTGTGGGTCGCGACTGGAGCCAGGTGGGAGTGGCCGGTTTATACTCT
CAGATTGAGAAGAATGGGTACAAGATTCTGTATCTGACGGCGAGACCGAT
TGGACAGGCGAGTCAGACCAGAGCGTTCCTGCATAGCGTGACGCAGGGCA
GCGCAAAGCTTCCAAACGGACCAGTTTTGATGAGCCCCAACCGGCTGGTG
GAGAGCTTTGCGCGCGAGGTGATTCGACGACGTCCGCATGAGTTTAAGAT
CGCGGCGTTGCGAGAAGTGCGTAGCTTGTTCTCTCCGGATTACAACCCGT
TTCATGCGGGGTTTGGCAATCGTGAGACGGATGTGATCTCGTACAGAGCG
GTGGGATTGATTCCGCAGCGCATTTTTGTGGTGAACACTCGAGGAGAGTT
GGCGGTGATGAAGGCGCGCTACGAAAGCACGGCGTCGTATAGCTCGCTGC
AGGATTTGGTGGAAAATGTGTTTCCGGACATATCGGGACGCACTGGCTTT
GAGATGATTCGTGCAATCACGGACACTGCGACGTTCAATGACTGGAAGTG
GTGGAAAGGGTCGCTTCCGGAGGTGGATTTCGATGCGTTGCTCGGTGAAT
AG

Coding sequence (CDS) from alignment at NODE_972_length_15628_cov_3.908026:11898..13349-

>Gcaud2614.t1 ID=Gcaud2614.t1|Name=Gcaud2614.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1452bp|location=Sequence derived from alignment at NODE_972_length_15628_cov_3.908026:11898..13349- (Gracilaria caudata M_176_S67 male)
ATGACTAGCGAGCAGTCGCTAAGCTTGTTTGATGAACATCGGATACCTTA
CGAGCACTTCATCAACAACCCTGAAATTTTGTACGACCCGTCGCTCATGT
TTCGCATCCAAGACAGACTGGTCAGCCTTAAAATCGCTGCGCCGTACGTG
TTCTCCGCAGCGTCGTTCAGAGAGCAACCGGATCTGGATGCACTCACAGA
ACGCGTGATGCGCGAGGGCGAAGCCACTGATGAGGCGCCCAAACAACCTC
CCCCCACGCCGGCGCGTCGTTTTCGATGGTTCTCGTGGTCCAATGCGCCG
GCTGAGAGCAACAGCAACAGCAACAGCAACAGCAACAGTGCCGAAGAACG
TAAAGACGCCGAAAATGGTGAAAAAGCGGCGCCAGAGAACAGAGACGTAG
ACGGCGTGGCCGATTTTCAGCTGGACGCCGGCGCCCCTGCCACAGCTGAA
GGTGAGGAACAGCGCGAAATATTACCACAAGAAGAGAGCAAAGCAGCACA
AGCGCGCTCAGAGCAAAAGGAGCAGCGCGTCAACGTTCAAAGCGAACAAG
CAGAGCGCAGCGCAGATACAAAAGAATCGAATGACACTCCGCTAGAGACG
GCAAACGTAGAGGTGCCGGGTATGATATCGTTCTCAGATATTGATCCAAA
TTCTTTGTCGTTGATACCCACATCGGAGCAATTGATGCAACTAGAACTGA
AACCCGGTGCAAATACAATACGCTTTATTGTACAATCCAGTTCGGTGGAA
CTCAACTGTCGCATATTTCTGTGGAGCTGTCACACGAAGATTGTGATATC
TGACGTGGACGGCACCATTACGCGCAGTGATGTGCTGGGTCATCTGCTGC
CGGCTGTGGGTCGCGACTGGAGCCAGGTGGGAGTGGCCGGTTTATACTCT
CAGATTGAGAAGAATGGGTACAAGATTCTGTATCTGACGGCGAGACCGAT
TGGACAGGCGAGTCAGACCAGAGCGTTCCTGCATAGCGTGACGCAGGGCA
GCGCAAAGCTTCCAAACGGACCAGTTTTGATGAGCCCCAACCGGCTGGTG
GAGAGCTTTGCGCGCGAGGTGATTCGACGACGTCCGCATGAGTTTAAGAT
CGCGGCGTTGCGAGAAGTGCGTAGCTTGTTCTCTCCGGATTACAACCCGT
TTCATGCGGGGTTTGGCAATCGTGAGACGGATGTGATCTCGTACAGAGCG
GTGGGATTGATTCCGCAGCGCATTTTTGTGGTGAACACTCGAGGAGAGTT
GGCGGTGATGAAGGCGCGCTACGAAAGCACGGCGTCGTATAGCTCGCTGC
AGGATTTGGTGGAAAATGTGTTTCCGGACATATCGGGACGCACTGGCTTT
GAGATGATTCGTGCAATCACGGACACTGCGACGTTCAATGACTGGAAGTG
GTGGAAAGGGTCGCTTCCGGAGGTGGATTTCGATGCGTTGCTCGGTGAAT
AG