Gcaud2612.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2612.t1
Unique Name	Gcaud2612.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	556

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_972_length_15628_cov_3.908026	contig	NODE_972_length_15628_cov_3.908026:8619..10286 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	325452.fgenesh_scip_prom.46568.2222
PFAMs	CAF1C_H4-bd,WD40
Max annot lvl	4776\|Peronosporales
KEGG ko	ko:K14848
Evalue	3.72e-80
EggNOG OGs	KOG0302@1\|root,KOG0302@2759\|Eukaryota,3Q7Z3@4776\|Peronosporales
Description	Histone-binding protein RBBP4 or subunit C of CAF1 complex
COG category	K
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2612	Gcaud2612	Gracilaria caudata M_176_S67 male	gene	NODE_972_length_15628_cov_3.908026 8619..10286 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2612.t1.start1	Gcaud2612.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_972_length_15628_cov_3.908026 8619..8621 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2612.t1.CDS1	Gcaud2612.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_972_length_15628_cov_3.908026 8619..10286 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2612.t1.exon1	Gcaud2612.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_972_length_15628_cov_3.908026 8619..10286 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2612.t1.stop1	Gcaud2612.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_972_length_15628_cov_3.908026 10284..10286 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2612.t1	Gcaud2612.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_972_length_15628_cov_3.908026 8619..10286 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_972_length_15628_cov_3.908026:8619..10286+
coding sequence from alignment at NODE_972_length_15628_cov_3.908026:8619..10286+

mRNA sequence

>Gcaud2612.t1 ID=Gcaud2612.t1|Name=Gcaud2612.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=556bp
MAGPKNRRGRGRGKPKMSRSQLRASVAASSNDAHASPASASRKRKAETEL
KKQHEEPDTEMVFEDPYGDDYEQEAQVEEDEQPRAEIRDPMMVNDAVVFR
PGKDKLAAGEKLVYDQSAYDQFHRFTTEWPSLSFDFVCSDASGEHSNISP
LLQQTYPMSTTLILGSQADANSKNKLVCLKVTNMHRTTRLRKGKPSAVKT
VGADGESSDDSSDEEDNEDESDEDESNLSLPSRNPVLQNVDIKFDSVANR
VRTMPQHPNIVAAWSSSGRFYIIDAAPALDVLSLDSRRRMRPPNSISPSN
IKPMYSFRGHGVEGYAMDWSRVAEGHLLTGALNGSMYLTQPSNREGAAFT
TSPDRYNGHRKPVEDIQWSPNEQNVFASCSSDKSIRIWDIRERRRSALGI
EKAHDTDVNVISWNRSETHLMVSGGDEGLVKVWDMRALTTAGDGAPKAAA
EFNQHTQAITSVQWNPTDSSMLCVGSEDGTVSIWDLAVERDAEEELREGV
VLSGADEFPPQLLFMHMGQKNVKEAQWHPSCPSLIVSTAEDGLNLFQASN
ITSPV*

spliced messenger RNA

>Gcaud2612.t1 ID=Gcaud2612.t1|Name=Gcaud2612.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1668bp|location=Sequence derived from alignment at NODE_972_length_15628_cov_3.908026:8619..10286+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGGCCCAAAGAACAGACGCGGCAGAGGGCGCGGAAAACCCAAAAT
GTCCCGCTCGCAGTTGCGAGCTTCTGTGGCCGCGTCGAGCAACGACGCTC
ACGCATCGCCCGCGTCCGCCTCGAGGAAGCGCAAGGCCGAAACCGAGTTG
AAAAAACAACACGAGGAACCGGACACTGAAATGGTGTTCGAAGACCCCTA
TGGAGATGATTACGAACAAGAAGCACAGGTTGAAGAGGACGAGCAACCGC
GCGCTGAGATTCGGGACCCGATGATGGTTAATGACGCAGTGGTGTTTAGA
CCGGGCAAAGATAAGCTTGCTGCTGGGGAGAAACTCGTGTATGACCAAAG
TGCGTACGATCAGTTTCATCGCTTTACTACCGAGTGGCCGTCTCTCTCAT
TTGACTTTGTATGTTCCGATGCCAGTGGTGAACATAGTAACATATCACCT
TTACTCCAACAAACCTATCCTATGAGCACCACCCTCATTCTTGGTTCTCA
AGCCGACGCAAACTCGAAGAACAAACTAGTCTGTCTCAAGGTCACCAACA
TGCATAGAACAACTCGCCTGCGAAAAGGAAAACCGAGCGCCGTCAAAACC
GTGGGTGCCGACGGTGAATCCTCTGACGATTCCTCAGACGAGGAAGACAA
CGAAGATGAAAGCGACGAAGATGAAAGCAATCTCTCACTTCCCAGTCGAA
ATCCGGTGCTTCAGAACGTCGACATCAAGTTCGACTCTGTTGCCAATCGC
GTCCGCACAATGCCTCAGCACCCAAACATCGTCGCCGCATGGAGTTCCTC
CGGTCGCTTTTATATCATAGATGCCGCGCCTGCATTAGACGTGTTGAGCC
TTGATAGTCGCCGAAGAATGAGACCTCCGAATTCCATTTCGCCGTCCAAT
ATCAAGCCCATGTACTCCTTCCGAGGTCACGGAGTAGAAGGTTATGCAAT
GGATTGGAGCCGTGTTGCTGAAGGACATCTGCTCACCGGCGCGTTGAATG
GAAGTATGTATTTGACCCAGCCATCAAATCGAGAAGGCGCCGCATTCACC
ACCTCTCCAGATCGTTACAACGGTCACCGCAAGCCCGTTGAAGATATTCA
ATGGTCTCCCAACGAACAAAACGTTTTTGCTAGCTGTAGTTCAGATAAGT
CAATACGCATTTGGGATATCCGGGAGCGAAGACGGAGCGCTCTTGGTATT
GAGAAAGCTCATGATACCGATGTGAACGTGATATCGTGGAACAGGAGCGA
AACGCATCTGATGGTGAGTGGAGGAGATGAGGGTTTGGTCAAAGTTTGGG
ATATGCGAGCGTTGACCACTGCAGGCGATGGGGCACCTAAGGCGGCTGCA
GAATTTAATCAGCATACGCAAGCAATAACGTCCGTGCAGTGGAACCCTAC
CGATTCGTCTATGCTGTGTGTTGGTTCTGAGGATGGGACTGTATCAATAT
GGGATCTGGCCGTCGAACGTGATGCAGAGGAAGAACTACGGGAGGGTGTT
GTACTTTCTGGAGCGGATGAATTTCCGCCTCAGTTGCTTTTCATGCACAT
GGGACAGAAGAATGTTAAAGAAGCGCAGTGGCATCCGTCATGTCCCTCAC
TGATCGTGAGTACCGCCGAGGATGGATTGAACTTGTTTCAAGCGTCCAAC
ATTACTTCGCCAGTATGA

protein sequence of Gcaud2612.t1

>Gcaud2612.t1 ID=Gcaud2612.t1|Name=Gcaud2612.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=556bp
MAGPKNRRGRGRGKPKMSRSQLRASVAASSNDAHASPASASRKRKAETEL
KKQHEEPDTEMVFEDPYGDDYEQEAQVEEDEQPRAEIRDPMMVNDAVVFR
PGKDKLAAGEKLVYDQSAYDQFHRFTTEWPSLSFDFVCSDASGEHSNISP
LLQQTYPMSTTLILGSQADANSKNKLVCLKVTNMHRTTRLRKGKPSAVKT
VGADGESSDDSSDEEDNEDESDEDESNLSLPSRNPVLQNVDIKFDSVANR
VRTMPQHPNIVAAWSSSGRFYIIDAAPALDVLSLDSRRRMRPPNSISPSN
IKPMYSFRGHGVEGYAMDWSRVAEGHLLTGALNGSMYLTQPSNREGAAFT
TSPDRYNGHRKPVEDIQWSPNEQNVFASCSSDKSIRIWDIRERRRSALGI
EKAHDTDVNVISWNRSETHLMVSGGDEGLVKVWDMRALTTAGDGAPKAAA
EFNQHTQAITSVQWNPTDSSMLCVGSEDGTVSIWDLAVERDAEEELREGV
VLSGADEFPPQLLFMHMGQKNVKEAQWHPSCPSLIVSTAEDGLNLFQASN
ITSPV*

mRNA from alignment at NODE_972_length_15628_cov_3.908026:8619..10286+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2612.t1 ID=Gcaud2612.t1|Name=Gcaud2612.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1668bp|location=Sequence derived from alignment at NODE_972_length_15628_cov_3.908026:8619..10286+ (Gracilaria caudata M_176_S67 male)
ATGGCCGGCCCAAAGAACAGACGCGGCAGAGGGCGCGGAAAACCCAAAAT
GTCCCGCTCGCAGTTGCGAGCTTCTGTGGCCGCGTCGAGCAACGACGCTC
ACGCATCGCCCGCGTCCGCCTCGAGGAAGCGCAAGGCCGAAACCGAGTTG
AAAAAACAACACGAGGAACCGGACACTGAAATGGTGTTCGAAGACCCCTA
TGGAGATGATTACGAACAAGAAGCACAGGTTGAAGAGGACGAGCAACCGC
GCGCTGAGATTCGGGACCCGATGATGGTTAATGACGCAGTGGTGTTTAGA
CCGGGCAAAGATAAGCTTGCTGCTGGGGAGAAACTCGTGTATGACCAAAG
TGCGTACGATCAGTTTCATCGCTTTACTACCGAGTGGCCGTCTCTCTCAT
TTGACTTTGTATGTTCCGATGCCAGTGGTGAACATAGTAACATATCACCT
TTACTCCAACAAACCTATCCTATGAGCACCACCCTCATTCTTGGTTCTCA
AGCCGACGCAAACTCGAAGAACAAACTAGTCTGTCTCAAGGTCACCAACA
TGCATAGAACAACTCGCCTGCGAAAAGGAAAACCGAGCGCCGTCAAAACC
GTGGGTGCCGACGGTGAATCCTCTGACGATTCCTCAGACGAGGAAGACAA
CGAAGATGAAAGCGACGAAGATGAAAGCAATCTCTCACTTCCCAGTCGAA
ATCCGGTGCTTCAGAACGTCGACATCAAGTTCGACTCTGTTGCCAATCGC
GTCCGCACAATGCCTCAGCACCCAAACATCGTCGCCGCATGGAGTTCCTC
CGGTCGCTTTTATATCATAGATGCCGCGCCTGCATTAGACGTGTTGAGCC
TTGATAGTCGCCGAAGAATGAGACCTCCGAATTCCATTTCGCCGTCCAAT
ATCAAGCCCATGTACTCCTTCCGAGGTCACGGAGTAGAAGGTTATGCAAT
GGATTGGAGCCGTGTTGCTGAAGGACATCTGCTCACCGGCGCGTTGAATG
GAAGTATGTATTTGACCCAGCCATCAAATCGAGAAGGCGCCGCATTCACC
ACCTCTCCAGATCGTTACAACGGTCACCGCAAGCCCGTTGAAGATATTCA
ATGGTCTCCCAACGAACAAAACGTTTTTGCTAGCTGTAGTTCAGATAAGT
CAATACGCATTTGGGATATCCGGGAGCGAAGACGGAGCGCTCTTGGTATT
GAGAAAGCTCATGATACCGATGTGAACGTGATATCGTGGAACAGGAGCGA
AACGCATCTGATGGTGAGTGGAGGAGATGAGGGTTTGGTCAAAGTTTGGG
ATATGCGAGCGTTGACCACTGCAGGCGATGGGGCACCTAAGGCGGCTGCA
GAATTTAATCAGCATACGCAAGCAATAACGTCCGTGCAGTGGAACCCTAC
CGATTCGTCTATGCTGTGTGTTGGTTCTGAGGATGGGACTGTATCAATAT
GGGATCTGGCCGTCGAACGTGATGCAGAGGAAGAACTACGGGAGGGTGTT
GTACTTTCTGGAGCGGATGAATTTCCGCCTCAGTTGCTTTTCATGCACAT
GGGACAGAAGAATGTTAAAGAAGCGCAGTGGCATCCGTCATGTCCCTCAC
TGATCGTGAGTACCGCCGAGGATGGATTGAACTTGTTTCAAGCGTCCAAC
ATTACTTCGCCAGTATGA

Coding sequence (CDS) from alignment at NODE_972_length_15628_cov_3.908026:8619..10286+

>Gcaud2612.t1 ID=Gcaud2612.t1|Name=Gcaud2612.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1668bp|location=Sequence derived from alignment at NODE_972_length_15628_cov_3.908026:8619..10286+ (Gracilaria caudata M_176_S67 male)
ATGGCCGGCCCAAAGAACAGACGCGGCAGAGGGCGCGGAAAACCCAAAAT
GTCCCGCTCGCAGTTGCGAGCTTCTGTGGCCGCGTCGAGCAACGACGCTC
ACGCATCGCCCGCGTCCGCCTCGAGGAAGCGCAAGGCCGAAACCGAGTTG
AAAAAACAACACGAGGAACCGGACACTGAAATGGTGTTCGAAGACCCCTA
TGGAGATGATTACGAACAAGAAGCACAGGTTGAAGAGGACGAGCAACCGC
GCGCTGAGATTCGGGACCCGATGATGGTTAATGACGCAGTGGTGTTTAGA
CCGGGCAAAGATAAGCTTGCTGCTGGGGAGAAACTCGTGTATGACCAAAG
TGCGTACGATCAGTTTCATCGCTTTACTACCGAGTGGCCGTCTCTCTCAT
TTGACTTTGTATGTTCCGATGCCAGTGGTGAACATAGTAACATATCACCT
TTACTCCAACAAACCTATCCTATGAGCACCACCCTCATTCTTGGTTCTCA
AGCCGACGCAAACTCGAAGAACAAACTAGTCTGTCTCAAGGTCACCAACA
TGCATAGAACAACTCGCCTGCGAAAAGGAAAACCGAGCGCCGTCAAAACC
GTGGGTGCCGACGGTGAATCCTCTGACGATTCCTCAGACGAGGAAGACAA
CGAAGATGAAAGCGACGAAGATGAAAGCAATCTCTCACTTCCCAGTCGAA
ATCCGGTGCTTCAGAACGTCGACATCAAGTTCGACTCTGTTGCCAATCGC
GTCCGCACAATGCCTCAGCACCCAAACATCGTCGCCGCATGGAGTTCCTC
CGGTCGCTTTTATATCATAGATGCCGCGCCTGCATTAGACGTGTTGAGCC
TTGATAGTCGCCGAAGAATGAGACCTCCGAATTCCATTTCGCCGTCCAAT
ATCAAGCCCATGTACTCCTTCCGAGGTCACGGAGTAGAAGGTTATGCAAT
GGATTGGAGCCGTGTTGCTGAAGGACATCTGCTCACCGGCGCGTTGAATG
GAAGTATGTATTTGACCCAGCCATCAAATCGAGAAGGCGCCGCATTCACC
ACCTCTCCAGATCGTTACAACGGTCACCGCAAGCCCGTTGAAGATATTCA
ATGGTCTCCCAACGAACAAAACGTTTTTGCTAGCTGTAGTTCAGATAAGT
CAATACGCATTTGGGATATCCGGGAGCGAAGACGGAGCGCTCTTGGTATT
GAGAAAGCTCATGATACCGATGTGAACGTGATATCGTGGAACAGGAGCGA
AACGCATCTGATGGTGAGTGGAGGAGATGAGGGTTTGGTCAAAGTTTGGG
ATATGCGAGCGTTGACCACTGCAGGCGATGGGGCACCTAAGGCGGCTGCA
GAATTTAATCAGCATACGCAAGCAATAACGTCCGTGCAGTGGAACCCTAC
CGATTCGTCTATGCTGTGTGTTGGTTCTGAGGATGGGACTGTATCAATAT
GGGATCTGGCCGTCGAACGTGATGCAGAGGAAGAACTACGGGAGGGTGTT
GTACTTTCTGGAGCGGATGAATTTCCGCCTCAGTTGCTTTTCATGCACAT
GGGACAGAAGAATGTTAAAGAAGCGCAGTGGCATCCGTCATGTCCCTCAC
TGATCGTGAGTACCGCCGAGGATGGATTGAACTTGTTTCAAGCGTCCAAC
ATTACTTCGCCAGTATGA