Gcaud2611.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2611.t1
Unique Name	Gcaud2611.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	409

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_972_length_15628_cov_3.908026	contig	NODE_972_length_15628_cov_3.908026:2312..3538 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMP085CT
PFAMs	ACT_6,HAD
Max annot lvl	2759\|Eukaryota
Evalue	6.11e-66
EggNOG OGs	COG0560@1\|root,KOG1615@2759\|Eukaryota
Description	phosphoserine phosphatase activity
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2611	Gcaud2611	Gracilaria caudata M_176_S67 male	gene	NODE_972_length_15628_cov_3.908026 2312..3538 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2611.t1.stop1	Gcaud2611.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_972_length_15628_cov_3.908026 2312..2314 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2611.t1.CDS1	Gcaud2611.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_972_length_15628_cov_3.908026 2312..3538 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2611.t1.exon1	Gcaud2611.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_972_length_15628_cov_3.908026 2312..3538 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2611.t1.start1	Gcaud2611.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_972_length_15628_cov_3.908026 3536..3538 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2611.t1	Gcaud2611.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_972_length_15628_cov_3.908026 2312..3538 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_972_length_15628_cov_3.908026:2312..3538-
coding sequence from alignment at NODE_972_length_15628_cov_3.908026:2312..3538-

mRNA sequence

>Gcaud2611.t1 ID=Gcaud2611.t1|Name=Gcaud2611.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=409bp
MANPQNVIVTLCGKQSPRALASVMHVLSTEDSELIDFGQLVVRNRFIATA
LISAKGAHDTVKEILFRAHKAEIQVHFNVPRGQSNMSTSSLSTQCDTKDQ
YILTVFSAGSIPPQLLAKVTRLLLGSGATIVSINRLTEEGDKYMCLEFTM
TVADELVIPKLQRQLFELGRTEFQCDLALQKANVSRKAKRMVVFDLSWTL
VQCDSINVLLHAAGIDVPSTEEQKFRNGEISGLEWVRFRVQLLKGLEADA
VNTKAVQSLVYTNGAMDLCKGLKRLGCKLAIVSSGSKDIAMAAKEALDLD
FVFGNVIEIDSAGKFTGTLKEPVVDAQRKSDLVAMLAMQERIDSEQVIAV
GDGPVSAKMLESVGMSIAFDQPDALDSVHSGRIGSKSLASVLYLLGVSGH
DFRTVTAS*

spliced messenger RNA

>Gcaud2611.t1 ID=Gcaud2611.t1|Name=Gcaud2611.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1227bp|location=Sequence derived from alignment at NODE_972_length_15628_cov_3.908026:2312..3538- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAATCCTCAAAACGTTATCGTCACCTTGTGCGGGAAGCAGTCGCC
AAGAGCGCTAGCGTCTGTTATGCATGTATTATCCACTGAAGACTCTGAGC
TCATCGACTTTGGCCAACTGGTCGTGCGCAATCGCTTCATCGCCACGGCG
CTCATATCCGCCAAGGGCGCTCATGACACAGTCAAGGAGATCCTCTTTCG
CGCCCACAAGGCTGAAATCCAGGTTCATTTCAATGTACCCCGTGGCCAGA
GCAATATGTCCACATCTTCTTTGTCCACACAATGCGACACCAAAGACCAA
TACATCCTCACAGTGTTTTCTGCGGGCTCTATTCCTCCGCAGCTACTTGC
AAAGGTAACTCGACTTTTGCTTGGCAGCGGCGCCACAATTGTCAGCATTA
ATCGCCTCACCGAGGAGGGCGATAAGTACATGTGCTTAGAATTCACCATG
ACCGTCGCGGACGAGTTAGTGATACCAAAGCTTCAACGTCAACTTTTTGA
GCTCGGCCGAACTGAGTTTCAATGCGATCTTGCCTTGCAAAAGGCAAATG
TGTCTCGCAAGGCCAAGAGAATGGTCGTGTTCGATCTGAGCTGGACGCTT
GTTCAATGTGATTCCATCAACGTCTTGCTTCACGCAGCCGGTATAGATGT
ACCGTCGACGGAGGAACAAAAGTTCCGCAACGGAGAGATCAGTGGCTTGG
AGTGGGTACGCTTCAGGGTACAGTTGCTGAAGGGATTAGAGGCCGACGCA
GTGAATACCAAAGCAGTCCAAAGCCTGGTTTACACAAATGGCGCCATGGA
CTTGTGCAAGGGCTTGAAGCGGCTAGGATGCAAGCTTGCCATTGTGTCCT
CGGGTTCAAAAGATATCGCCATGGCAGCAAAAGAAGCTCTCGACCTTGAC
TTTGTGTTTGGAAATGTTATTGAAATCGATTCGGCAGGCAAGTTTACTGG
CACTCTCAAGGAACCTGTTGTTGATGCTCAGCGAAAGTCAGACCTAGTTG
CAATGCTGGCGATGCAAGAACGTATAGACAGCGAACAAGTCATTGCCGTG
GGCGACGGTCCGGTGAGTGCGAAGATGCTCGAAAGCGTGGGCATGAGCAT
TGCTTTTGACCAACCTGATGCGTTGGATTCAGTGCACAGCGGCAGAATTG
GTAGCAAGAGCCTCGCGAGCGTTCTCTATCTACTTGGTGTTTCCGGTCAT
GACTTCCGCACGGTTACTGCTAGCTAG

protein sequence of Gcaud2611.t1

>Gcaud2611.t1 ID=Gcaud2611.t1|Name=Gcaud2611.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=409bp
MANPQNVIVTLCGKQSPRALASVMHVLSTEDSELIDFGQLVVRNRFIATA
LISAKGAHDTVKEILFRAHKAEIQVHFNVPRGQSNMSTSSLSTQCDTKDQ
YILTVFSAGSIPPQLLAKVTRLLLGSGATIVSINRLTEEGDKYMCLEFTM
TVADELVIPKLQRQLFELGRTEFQCDLALQKANVSRKAKRMVVFDLSWTL
VQCDSINVLLHAAGIDVPSTEEQKFRNGEISGLEWVRFRVQLLKGLEADA
VNTKAVQSLVYTNGAMDLCKGLKRLGCKLAIVSSGSKDIAMAAKEALDLD
FVFGNVIEIDSAGKFTGTLKEPVVDAQRKSDLVAMLAMQERIDSEQVIAV
GDGPVSAKMLESVGMSIAFDQPDALDSVHSGRIGSKSLASVLYLLGVSGH
DFRTVTAS*

mRNA from alignment at NODE_972_length_15628_cov_3.908026:2312..3538-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2611.t1 ID=Gcaud2611.t1|Name=Gcaud2611.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1227bp|location=Sequence derived from alignment at NODE_972_length_15628_cov_3.908026:2312..3538- (Gracilaria caudata M_176_S67 male)
ATGGCCAATCCTCAAAACGTTATCGTCACCTTGTGCGGGAAGCAGTCGCC
AAGAGCGCTAGCGTCTGTTATGCATGTATTATCCACTGAAGACTCTGAGC
TCATCGACTTTGGCCAACTGGTCGTGCGCAATCGCTTCATCGCCACGGCG
CTCATATCCGCCAAGGGCGCTCATGACACAGTCAAGGAGATCCTCTTTCG
CGCCCACAAGGCTGAAATCCAGGTTCATTTCAATGTACCCCGTGGCCAGA
GCAATATGTCCACATCTTCTTTGTCCACACAATGCGACACCAAAGACCAA
TACATCCTCACAGTGTTTTCTGCGGGCTCTATTCCTCCGCAGCTACTTGC
AAAGGTAACTCGACTTTTGCTTGGCAGCGGCGCCACAATTGTCAGCATTA
ATCGCCTCACCGAGGAGGGCGATAAGTACATGTGCTTAGAATTCACCATG
ACCGTCGCGGACGAGTTAGTGATACCAAAGCTTCAACGTCAACTTTTTGA
GCTCGGCCGAACTGAGTTTCAATGCGATCTTGCCTTGCAAAAGGCAAATG
TGTCTCGCAAGGCCAAGAGAATGGTCGTGTTCGATCTGAGCTGGACGCTT
GTTCAATGTGATTCCATCAACGTCTTGCTTCACGCAGCCGGTATAGATGT
ACCGTCGACGGAGGAACAAAAGTTCCGCAACGGAGAGATCAGTGGCTTGG
AGTGGGTACGCTTCAGGGTACAGTTGCTGAAGGGATTAGAGGCCGACGCA
GTGAATACCAAAGCAGTCCAAAGCCTGGTTTACACAAATGGCGCCATGGA
CTTGTGCAAGGGCTTGAAGCGGCTAGGATGCAAGCTTGCCATTGTGTCCT
CGGGTTCAAAAGATATCGCCATGGCAGCAAAAGAAGCTCTCGACCTTGAC
TTTGTGTTTGGAAATGTTATTGAAATCGATTCGGCAGGCAAGTTTACTGG
CACTCTCAAGGAACCTGTTGTTGATGCTCAGCGAAAGTCAGACCTAGTTG
CAATGCTGGCGATGCAAGAACGTATAGACAGCGAACAAGTCATTGCCGTG
GGCGACGGTCCGGTGAGTGCGAAGATGCTCGAAAGCGTGGGCATGAGCAT
TGCTTTTGACCAACCTGATGCGTTGGATTCAGTGCACAGCGGCAGAATTG
GTAGCAAGAGCCTCGCGAGCGTTCTCTATCTACTTGGTGTTTCCGGTCAT
GACTTCCGCACGGTTACTGCTAGCTAG

Coding sequence (CDS) from alignment at NODE_972_length_15628_cov_3.908026:2312..3538-

>Gcaud2611.t1 ID=Gcaud2611.t1|Name=Gcaud2611.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1227bp|location=Sequence derived from alignment at NODE_972_length_15628_cov_3.908026:2312..3538- (Gracilaria caudata M_176_S67 male)
ATGGCCAATCCTCAAAACGTTATCGTCACCTTGTGCGGGAAGCAGTCGCC
AAGAGCGCTAGCGTCTGTTATGCATGTATTATCCACTGAAGACTCTGAGC
TCATCGACTTTGGCCAACTGGTCGTGCGCAATCGCTTCATCGCCACGGCG
CTCATATCCGCCAAGGGCGCTCATGACACAGTCAAGGAGATCCTCTTTCG
CGCCCACAAGGCTGAAATCCAGGTTCATTTCAATGTACCCCGTGGCCAGA
GCAATATGTCCACATCTTCTTTGTCCACACAATGCGACACCAAAGACCAA
TACATCCTCACAGTGTTTTCTGCGGGCTCTATTCCTCCGCAGCTACTTGC
AAAGGTAACTCGACTTTTGCTTGGCAGCGGCGCCACAATTGTCAGCATTA
ATCGCCTCACCGAGGAGGGCGATAAGTACATGTGCTTAGAATTCACCATG
ACCGTCGCGGACGAGTTAGTGATACCAAAGCTTCAACGTCAACTTTTTGA
GCTCGGCCGAACTGAGTTTCAATGCGATCTTGCCTTGCAAAAGGCAAATG
TGTCTCGCAAGGCCAAGAGAATGGTCGTGTTCGATCTGAGCTGGACGCTT
GTTCAATGTGATTCCATCAACGTCTTGCTTCACGCAGCCGGTATAGATGT
ACCGTCGACGGAGGAACAAAAGTTCCGCAACGGAGAGATCAGTGGCTTGG
AGTGGGTACGCTTCAGGGTACAGTTGCTGAAGGGATTAGAGGCCGACGCA
GTGAATACCAAAGCAGTCCAAAGCCTGGTTTACACAAATGGCGCCATGGA
CTTGTGCAAGGGCTTGAAGCGGCTAGGATGCAAGCTTGCCATTGTGTCCT
CGGGTTCAAAAGATATCGCCATGGCAGCAAAAGAAGCTCTCGACCTTGAC
TTTGTGTTTGGAAATGTTATTGAAATCGATTCGGCAGGCAAGTTTACTGG
CACTCTCAAGGAACCTGTTGTTGATGCTCAGCGAAAGTCAGACCTAGTTG
CAATGCTGGCGATGCAAGAACGTATAGACAGCGAACAAGTCATTGCCGTG
GGCGACGGTCCGGTGAGTGCGAAGATGCTCGAAAGCGTGGGCATGAGCAT
TGCTTTTGACCAACCTGATGCGTTGGATTCAGTGCACAGCGGCAGAATTG
GTAGCAAGAGCCTCGCGAGCGTTCTCTATCTACTTGGTGTTTCCGGTCAT
GACTTCCGCACGGTTACTGCTAGCTAG