Gcaud2610.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2610.t1
Unique NameGcaud2610.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length226
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_972_length_15628_cov_3.908026contigNODE_972_length_15628_cov_3.908026:878..1555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog471856.Jden_1927
PFAMsAlpha-amylase,Alpha-amylase_C,CBM_20,CBM_25
Max annot lvl201174|Actinobacteria
KEGG koko:K01176
KEGG ReactionR02108,R02112,R11262
KEGG Pathwayko00500,ko01100,ko04973,map00500,map01100,map04973
Evalue0.000144
EggNOG OGsCOG0366@1|root,COG0366@2|Bacteria,2GKK1@201174|Actinobacteria
EC3.2.1.1
DescriptionBelongs to the glycosyl hydrolase 13 family
COG categoryG
CAZyGH13
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2610Gcaud2610Gracilaria caudata M_176_S67 malegeneNODE_972_length_15628_cov_3.908026 878..1555 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2610.t1.start1Gcaud2610.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_972_length_15628_cov_3.908026 878..880 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2610.t1.CDS1Gcaud2610.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_972_length_15628_cov_3.908026 878..1555 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2610.t1.exon1Gcaud2610.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_972_length_15628_cov_3.908026 878..1555 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2610.t1.stop1Gcaud2610.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_972_length_15628_cov_3.908026 1553..1555 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2610.t1Gcaud2610.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_972_length_15628_cov_3.908026 878..1555 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2610.t1 ID=Gcaud2610.t1|Name=Gcaud2610.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=226bp
MRYCYLLEKLPDGTFSKPSLDNRLRDASHIRDGFRVFRLPFRRIEFVLTN
GTLRNWEDNNGNNYVIDVPGRYVVEHGIRRVADADANECYQTVNRPNDRF
IQLSFRADLWQQCYCSFQSDDNEWTKPPGKPMAVMQREQPGRYFELVVEA
SRMACAFNDGGENWDSRLNKNYLIGCHGKYEVCDGSAKYISPSDKDLQAT
PAVETLPVSAAANFVRASPALPEVV*
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spliced messenger RNA

>Gcaud2610.t1 ID=Gcaud2610.t1|Name=Gcaud2610.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=678bp|location=Sequence derived from alignment at NODE_972_length_15628_cov_3.908026:878..1555+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTACTGCTACCTGTTGGAAAAGTTACCCGATGGGACCTTTTCAAA
GCCCTCGCTGGACAACCGTCTGCGAGACGCCTCTCACATTCGTGACGGCT
TTCGCGTGTTTCGACTGCCGTTTCGACGCATAGAGTTTGTGCTTACCAAT
GGTACTCTTCGCAACTGGGAGGATAACAACGGCAACAACTACGTCATCGA
TGTACCCGGTCGTTACGTCGTCGAACATGGCATTCGTCGCGTGGCCGATG
CCGACGCAAACGAATGTTATCAAACCGTAAATCGTCCCAACGATCGTTTC
ATTCAGCTTTCGTTCAGAGCCGATTTATGGCAGCAATGTTATTGTTCTTT
TCAGAGTGACGATAATGAATGGACGAAACCGCCTGGAAAGCCCATGGCTG
TCATGCAAAGGGAACAACCAGGCCGCTACTTTGAGCTGGTTGTAGAGGCT
TCTCGAATGGCATGTGCGTTCAATGATGGCGGCGAAAACTGGGACTCTAG
ATTAAACAAGAACTATCTTATCGGTTGTCATGGCAAATACGAAGTTTGTG
ACGGCTCTGCCAAGTATATCTCGCCATCTGATAAGGATCTTCAGGCCACG
CCTGCTGTGGAAACGCTTCCAGTATCCGCTGCTGCCAATTTCGTCCGAGC
TTCTCCAGCGCTTCCGGAGGTTGTATAG
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protein sequence of Gcaud2610.t1

>Gcaud2610.t1 ID=Gcaud2610.t1|Name=Gcaud2610.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=226bp
MRYCYLLEKLPDGTFSKPSLDNRLRDASHIRDGFRVFRLPFRRIEFVLTN
GTLRNWEDNNGNNYVIDVPGRYVVEHGIRRVADADANECYQTVNRPNDRF
IQLSFRADLWQQCYCSFQSDDNEWTKPPGKPMAVMQREQPGRYFELVVEA
SRMACAFNDGGENWDSRLNKNYLIGCHGKYEVCDGSAKYISPSDKDLQAT
PAVETLPVSAAANFVRASPALPEVV*
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mRNA from alignment at NODE_972_length_15628_cov_3.908026:878..1555+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2610.t1 ID=Gcaud2610.t1|Name=Gcaud2610.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=678bp|location=Sequence derived from alignment at NODE_972_length_15628_cov_3.908026:878..1555+ (Gracilaria caudata M_176_S67 male)
ATGCGCTACTGCTACCTGTTGGAAAAGTTACCCGATGGGACCTTTTCAAA
GCCCTCGCTGGACAACCGTCTGCGAGACGCCTCTCACATTCGTGACGGCT
TTCGCGTGTTTCGACTGCCGTTTCGACGCATAGAGTTTGTGCTTACCAAT
GGTACTCTTCGCAACTGGGAGGATAACAACGGCAACAACTACGTCATCGA
TGTACCCGGTCGTTACGTCGTCGAACATGGCATTCGTCGCGTGGCCGATG
CCGACGCAAACGAATGTTATCAAACCGTAAATCGTCCCAACGATCGTTTC
ATTCAGCTTTCGTTCAGAGCCGATTTATGGCAGCAATGTTATTGTTCTTT
TCAGAGTGACGATAATGAATGGACGAAACCGCCTGGAAAGCCCATGGCTG
TCATGCAAAGGGAACAACCAGGCCGCTACTTTGAGCTGGTTGTAGAGGCT
TCTCGAATGGCATGTGCGTTCAATGATGGCGGCGAAAACTGGGACTCTAG
ATTAAACAAGAACTATCTTATCGGTTGTCATGGCAAATACGAAGTTTGTG
ACGGCTCTGCCAAGTATATCTCGCCATCTGATAAGGATCTTCAGGCCACG
CCTGCTGTGGAAACGCTTCCAGTATCCGCTGCTGCCAATTTCGTCCGAGC
TTCTCCAGCGCTTCCGGAGGTTGTATAG
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Coding sequence (CDS) from alignment at NODE_972_length_15628_cov_3.908026:878..1555+

>Gcaud2610.t1 ID=Gcaud2610.t1|Name=Gcaud2610.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=678bp|location=Sequence derived from alignment at NODE_972_length_15628_cov_3.908026:878..1555+ (Gracilaria caudata M_176_S67 male)
ATGCGCTACTGCTACCTGTTGGAAAAGTTACCCGATGGGACCTTTTCAAA
GCCCTCGCTGGACAACCGTCTGCGAGACGCCTCTCACATTCGTGACGGCT
TTCGCGTGTTTCGACTGCCGTTTCGACGCATAGAGTTTGTGCTTACCAAT
GGTACTCTTCGCAACTGGGAGGATAACAACGGCAACAACTACGTCATCGA
TGTACCCGGTCGTTACGTCGTCGAACATGGCATTCGTCGCGTGGCCGATG
CCGACGCAAACGAATGTTATCAAACCGTAAATCGTCCCAACGATCGTTTC
ATTCAGCTTTCGTTCAGAGCCGATTTATGGCAGCAATGTTATTGTTCTTT
TCAGAGTGACGATAATGAATGGACGAAACCGCCTGGAAAGCCCATGGCTG
TCATGCAAAGGGAACAACCAGGCCGCTACTTTGAGCTGGTTGTAGAGGCT
TCTCGAATGGCATGTGCGTTCAATGATGGCGGCGAAAACTGGGACTCTAG
ATTAAACAAGAACTATCTTATCGGTTGTCATGGCAAATACGAAGTTTGTG
ACGGCTCTGCCAAGTATATCTCGCCATCTGATAAGGATCTTCAGGCCACG
CCTGCTGTGGAAACGCTTCCAGTATCCGCTGCTGCCAATTTCGTCCGAGC
TTCTCCAGCGCTTCCGGAGGTTGTATAG
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