Gcaud2608.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2608.t1
Unique NameGcaud2608.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length215
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_53_length_63756_cov_4.464180contigNODE_53_length_63756_cov_4.464180:61372..62016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog82508.K1VA36
PFAMsDUF1771,Smr
Max annot lvl4751|Fungi
GOsGO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016788,GO:0019205,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046404,GO:0046483,GO:0050896,GO:0051716,GO:0051731,GO:0051733,GO:0051734,GO:0071704,GO:0071944,GO:0090304,GO:0090305,GO:1901360
Evalue1.89e-07
EggNOG OGsKOG2401@1|root,KOG2401@2759|Eukaryota,39MCW@33154|Opisthokonta,3NX3G@4751|Fungi,3V192@5204|Basidiomycota,3VFJM@5234|Tremellales
DescriptionCytoplasm protein
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2608Gcaud2608Gracilaria caudata M_176_S67 malegeneNODE_53_length_63756_cov_4.464180 61372..62016 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2608.t1.stop1Gcaud2608.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_53_length_63756_cov_4.464180 61372..61374 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2608.t1.CDS1Gcaud2608.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_53_length_63756_cov_4.464180 61372..62016 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2608.t1.exon1Gcaud2608.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_53_length_63756_cov_4.464180 61372..62016 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2608.t1.start1Gcaud2608.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_53_length_63756_cov_4.464180 62014..62016 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2608.t1Gcaud2608.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_53_length_63756_cov_4.464180 61372..62016 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2608.t1 ID=Gcaud2608.t1|Name=Gcaud2608.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=215bp
MPRENIRRLLHQYEGCIELVEEQILLQFPVDQPQAFASAPAPVAPSSHAA
RQQAMAESLRRQDAAEIAHQAAAARADDSSFEQLRQRLWQQRKALSRTNV
LANHTRNKAHRESASRIESEVNELSARVLHCLRHSEQYRRGELDLHGLTK
EEAIQLVEWKLLDAGRRRFRVITGKGIHSHNEQAVLRPALEKHFREQRIS
FTRYQDGVLSVIPR*
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spliced messenger RNA

>Gcaud2608.t1 ID=Gcaud2608.t1|Name=Gcaud2608.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=645bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:61372..62016- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCGCGAGAACATTCGTCGTTTACTGCACCAGTACGAAGGCTGCAT
CGAGCTGGTGGAGGAGCAAATTCTGCTCCAATTTCCGGTTGACCAACCGC
AAGCGTTTGCGTCTGCGCCTGCGCCCGTTGCGCCGTCGTCGCACGCGGCG
CGTCAACAGGCCATGGCGGAGTCGTTGCGCCGCCAGGATGCTGCTGAGAT
TGCGCATCAGGCCGCTGCTGCTCGTGCCGATGATAGTTCGTTCGAGCAGT
TGCGACAGCGCCTGTGGCAACAACGAAAAGCGTTGTCCAGAACCAATGTG
CTCGCCAATCACACGCGCAACAAGGCCCATCGCGAAAGCGCCAGCCGGAT
TGAGAGCGAGGTCAACGAGTTGTCGGCGCGCGTGCTGCATTGCTTGCGAC
ATTCGGAGCAGTACAGGAGGGGAGAGCTTGACTTGCACGGTCTTACCAAG
GAAGAGGCCATTCAATTGGTGGAGTGGAAGCTGTTGGACGCTGGGCGACG
TCGTTTCCGAGTCATCACCGGTAAGGGAATACACAGTCACAACGAGCAAG
CCGTGTTACGCCCCGCGCTCGAGAAACATTTTCGAGAACAGCGCATCTCG
TTCACGCGCTACCAGGACGGTGTGCTCTCGGTGATTCCGCGATGA
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protein sequence of Gcaud2608.t1

>Gcaud2608.t1 ID=Gcaud2608.t1|Name=Gcaud2608.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=215bp
MPRENIRRLLHQYEGCIELVEEQILLQFPVDQPQAFASAPAPVAPSSHAA
RQQAMAESLRRQDAAEIAHQAAAARADDSSFEQLRQRLWQQRKALSRTNV
LANHTRNKAHRESASRIESEVNELSARVLHCLRHSEQYRRGELDLHGLTK
EEAIQLVEWKLLDAGRRRFRVITGKGIHSHNEQAVLRPALEKHFREQRIS
FTRYQDGVLSVIPR*
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mRNA from alignment at NODE_53_length_63756_cov_4.464180:61372..62016-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2608.t1 ID=Gcaud2608.t1|Name=Gcaud2608.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=645bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:61372..62016- (Gracilaria caudata M_176_S67 male)
ATGCCGCGCGAGAACATTCGTCGTTTACTGCACCAGTACGAAGGCTGCAT
CGAGCTGGTGGAGGAGCAAATTCTGCTCCAATTTCCGGTTGACCAACCGC
AAGCGTTTGCGTCTGCGCCTGCGCCCGTTGCGCCGTCGTCGCACGCGGCG
CGTCAACAGGCCATGGCGGAGTCGTTGCGCCGCCAGGATGCTGCTGAGAT
TGCGCATCAGGCCGCTGCTGCTCGTGCCGATGATAGTTCGTTCGAGCAGT
TGCGACAGCGCCTGTGGCAACAACGAAAAGCGTTGTCCAGAACCAATGTG
CTCGCCAATCACACGCGCAACAAGGCCCATCGCGAAAGCGCCAGCCGGAT
TGAGAGCGAGGTCAACGAGTTGTCGGCGCGCGTGCTGCATTGCTTGCGAC
ATTCGGAGCAGTACAGGAGGGGAGAGCTTGACTTGCACGGTCTTACCAAG
GAAGAGGCCATTCAATTGGTGGAGTGGAAGCTGTTGGACGCTGGGCGACG
TCGTTTCCGAGTCATCACCGGTAAGGGAATACACAGTCACAACGAGCAAG
CCGTGTTACGCCCCGCGCTCGAGAAACATTTTCGAGAACAGCGCATCTCG
TTCACGCGCTACCAGGACGGTGTGCTCTCGGTGATTCCGCGATGA
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Coding sequence (CDS) from alignment at NODE_53_length_63756_cov_4.464180:61372..62016-

>Gcaud2608.t1 ID=Gcaud2608.t1|Name=Gcaud2608.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=645bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:61372..62016- (Gracilaria caudata M_176_S67 male)
ATGCCGCGCGAGAACATTCGTCGTTTACTGCACCAGTACGAAGGCTGCAT
CGAGCTGGTGGAGGAGCAAATTCTGCTCCAATTTCCGGTTGACCAACCGC
AAGCGTTTGCGTCTGCGCCTGCGCCCGTTGCGCCGTCGTCGCACGCGGCG
CGTCAACAGGCCATGGCGGAGTCGTTGCGCCGCCAGGATGCTGCTGAGAT
TGCGCATCAGGCCGCTGCTGCTCGTGCCGATGATAGTTCGTTCGAGCAGT
TGCGACAGCGCCTGTGGCAACAACGAAAAGCGTTGTCCAGAACCAATGTG
CTCGCCAATCACACGCGCAACAAGGCCCATCGCGAAAGCGCCAGCCGGAT
TGAGAGCGAGGTCAACGAGTTGTCGGCGCGCGTGCTGCATTGCTTGCGAC
ATTCGGAGCAGTACAGGAGGGGAGAGCTTGACTTGCACGGTCTTACCAAG
GAAGAGGCCATTCAATTGGTGGAGTGGAAGCTGTTGGACGCTGGGCGACG
TCGTTTCCGAGTCATCACCGGTAAGGGAATACACAGTCACAACGAGCAAG
CCGTGTTACGCCCCGCGCTCGAGAAACATTTTCGAGAACAGCGCATCTCG
TTCACGCGCTACCAGGACGGTGTGCTCTCGGTGATTCCGCGATGA
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