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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 130081.XP_005702723.1 |
| PFAMs | Cullin_binding,UBA_4 |
| Max annot lvl | 2759|Eukaryota |
| KEGG rclass | RC00005 |
| KEGG ko | ko:K00721,ko:K17822 |
| KEGG Reaction | R01009 |
| KEGG Pathway | ko00510,ko01100,map00510,map01100 |
| Evalue | 2.54e-57 |
| EggNOG OGs | KOG3077@1|root,KOG3077@2759|Eukaryota |
| EC | 2.4.1.83 |
| Description | cullin family protein binding |
| COG category | S |
| CAZy | GT2 |
| BRITE | ko00000,ko00001,ko01000,ko01003,ko04121 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud2606.t1.stop1 | Gcaud2606.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_53_length_63756_cov_4.464180 58896..58898 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud2606.t1.start1 | Gcaud2606.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_53_length_63756_cov_4.464180 59820..59822 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud2606.t1 ID=Gcaud2606.t1|Name=Gcaud2606.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=247bp
MGGASRGRVVKKQRSSKHRAEVLPQSASRAMRRGFNRVSRVQSAARPAVD
YAAIEDMFTSCRDADADKIGPEGIQALFERLEIDILDISTLIFAWKLQAK
VPFEFSKKEFVDGCANLRADSWDKLKKAIPSLRAAITDAKDFRSFYMYAF
EYNKPPEQRSLPIETARQLFPLIFAGRFKHLQLWMDFLKNRRQAISRDTY
TLLLDFVNTIDESMSNYDEENGAWPVLLDEFVDFAKPRLNQQNVAQ* back to topspliced messenger RNA >Gcaud2606.t1 ID=Gcaud2606.t1|Name=Gcaud2606.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=741bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:58896..59822- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGGCGGTGCTTCGAGAGGTCGTGTGGTGAAGAAACAACGATCGTCTAA
ACATCGTGCTGAAGTGCTTCCTCAATCAGCCTCTCGCGCCATGAGGCGCG
GGTTTAATCGCGTCTCTAGGGTGCAGTCTGCTGCGAGACCTGCTGTCGAT
TACGCGGCCATCGAGGATATGTTCACCTCTTGTCGTGACGCGGACGCGGA
CAAGATTGGACCGGAGGGTATTCAGGCGTTGTTCGAACGCTTGGAAATAG
ATATCCTTGATATTTCTACGTTGATATTTGCGTGGAAGCTGCAAGCAAAA
GTGCCGTTTGAGTTTTCGAAGAAGGAGTTTGTGGATGGATGCGCCAATCT
ACGCGCCGATTCGTGGGACAAGCTCAAGAAAGCCATACCGTCGTTGAGAG
CGGCCATCACGGACGCAAAGGACTTTCGAAGCTTTTACATGTACGCGTTT
GAGTACAACAAGCCGCCGGAGCAGAGAAGCCTGCCCATTGAAACGGCGAG
ACAACTGTTCCCGCTCATATTTGCGGGGCGCTTCAAGCACCTGCAGCTGT
GGATGGACTTTCTGAAGAACCGACGTCAAGCGATTTCGCGCGACACGTAC
ACGCTGTTGCTGGATTTCGTGAATACTATTGATGAGAGCATGAGCAATTA
CGACGAGGAGAACGGCGCGTGGCCGGTGCTGTTGGATGAGTTTGTAGATT
TTGCAAAGCCAAGACTCAACCAACAGAACGTGGCGCAATGA back to topprotein sequence of Gcaud2606.t1 >Gcaud2606.t1 ID=Gcaud2606.t1|Name=Gcaud2606.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=247bp
MGGASRGRVVKKQRSSKHRAEVLPQSASRAMRRGFNRVSRVQSAARPAVD
YAAIEDMFTSCRDADADKIGPEGIQALFERLEIDILDISTLIFAWKLQAK
VPFEFSKKEFVDGCANLRADSWDKLKKAIPSLRAAITDAKDFRSFYMYAF
EYNKPPEQRSLPIETARQLFPLIFAGRFKHLQLWMDFLKNRRQAISRDTY
TLLLDFVNTIDESMSNYDEENGAWPVLLDEFVDFAKPRLNQQNVAQ* back to topmRNA from alignment at NODE_53_length_63756_cov_4.464180:58896..59822- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud2606.t1 ID=Gcaud2606.t1|Name=Gcaud2606.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=927bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:58896..59822- (Gracilaria caudata M_176_S67 male)
ATGGGCGGTGCTTCGAGAGGTCGTGTGGTGAAGAAACAACGATCGTCTAA
ACATCGTGCTGAAGTGCTTCCTCAATCAGCCTCTCGCGCCATGAGGCGCG
GGTTTAATCGCGTCTCTAGGGTGCAGTCTGCTGCGAGACCTGCTGTCGAT
TACGCGGCCATCGAGGATATGTTCACCTCTTGTCGTGACGCGGACGGTGT
GTTGTTTGCTCTTTTTTTCTGTGTTTATCTGTGTGTGCTGTTTGGTGGTA
ACTGACCCGTTGTGTTGTGTGTGTTGCGTAGCGGACAAGATTGGACCGGA
GGGTATTCAGGCGTTGTTCGAACGCTTGGAAATAGATATCCTTGATATTT
CTACGTTGATATTTGCGTGGAAGCTGCAAGCAAAAGTGCCGTTTGAGTTT
TCGAAGAAGGAGTTTGTGGATGGATGCGCCAATCTACGCGCCGATTCGTG
GGACAAGCTCAAGAAAGCCATACGTAAGTTGCCCACAAGACACTATTGCA
CCTGAAACCAAAGAGCTGGCTTCAAAAGGAAAAAAAGAAAAAGTGCTGAC
TAGCGAATGCCAAACACTGTTCAGCGTCGTTGAGAGCGGCCATCACGGAC
GCAAAGGACTTTCGAAGCTTTTACATGTACGCGTTTGAGTACAACAAGCC
GCCGGAGCAGAGAAGCCTGCCCATTGAAACGGCGAGACAACTGTTCCCGC
TCATATTTGCGGGGCGCTTCAAGCACCTGCAGCTGTGGATGGACTTTCTG
AAGAACCGACGTCAAGCGATTTCGCGCGACACGTACACGCTGTTGCTGGA
TTTCGTGAATACTATTGATGAGAGCATGAGCAATTACGACGAGGAGAACG
GCGCGTGGCCGGTGCTGTTGGATGAGTTTGTAGATTTTGCAAAGCCAAGA
CTCAACCAACAGAACGTGGCGCAATGA back to topCoding sequence (CDS) from alignment at NODE_53_length_63756_cov_4.464180:58896..59822- >Gcaud2606.t1 ID=Gcaud2606.t1|Name=Gcaud2606.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=741bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:58896..59822- (Gracilaria caudata M_176_S67 male)
ATGGGCGGTGCTTCGAGAGGTCGTGTGGTGAAGAAACAACGATCGTCTAA
ACATCGTGCTGAAGTGCTTCCTCAATCAGCCTCTCGCGCCATGAGGCGCG
GGTTTAATCGCGTCTCTAGGGTGCAGTCTGCTGCGAGACCTGCTGTCGAT
TACGCGGCCATCGAGGATATGTTCACCTCTTGTCGTGACGCGGACGCGGA
CAAGATTGGACCGGAGGGTATTCAGGCGTTGTTCGAACGCTTGGAAATAG
ATATCCTTGATATTTCTACGTTGATATTTGCGTGGAAGCTGCAAGCAAAA
GTGCCGTTTGAGTTTTCGAAGAAGGAGTTTGTGGATGGATGCGCCAATCT
ACGCGCCGATTCGTGGGACAAGCTCAAGAAAGCCATACCGTCGTTGAGAG
CGGCCATCACGGACGCAAAGGACTTTCGAAGCTTTTACATGTACGCGTTT
GAGTACAACAAGCCGCCGGAGCAGAGAAGCCTGCCCATTGAAACGGCGAG
ACAACTGTTCCCGCTCATATTTGCGGGGCGCTTCAAGCACCTGCAGCTGT
GGATGGACTTTCTGAAGAACCGACGTCAAGCGATTTCGCGCGACACGTAC
ACGCTGTTGCTGGATTTCGTGAATACTATTGATGAGAGCATGAGCAATTA
CGACGAGGAGAACGGCGCGTGGCCGGTGCTGTTGGATGAGTTTGTAGATT
TTGCAAAGCCAAGACTCAACCAACAGAACGTGGCGCAATGA back to top
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