Gcaud2604.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2604.t1
Unique Name	Gcaud2604.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	533

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_53_length_63756_cov_4.464180	contig	NODE_53_length_63756_cov_4.464180:55967..57565 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	91464.S7335_3776
PFAMs	Big_5,GSDH,Malectin,TIG
Max annot lvl	1117\|Cyanobacteria
Evalue	5.28e-16
EggNOG OGs	COG2133@1\|root,COG2374@1\|root,COG2931@1\|root,COG3055@1\|root,COG2133@2\|Bacteria,COG2374@2\|Bacteria,COG2931@2\|Bacteria,COG3055@2\|Bacteria,1G17Y@1117\|Cyanobacteria
Description	Glucose / Sorbosone dehydrogenase
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2604	Gcaud2604	Gracilaria caudata M_176_S67 male	gene	NODE_53_length_63756_cov_4.464180 55967..57565 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2604.t1.start1	Gcaud2604.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_53_length_63756_cov_4.464180 55967..55969 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2604.t1.CDS1	Gcaud2604.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_53_length_63756_cov_4.464180 55967..57565 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2604.t1.exon1	Gcaud2604.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_53_length_63756_cov_4.464180 55967..57565 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2604.t1.stop1	Gcaud2604.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_53_length_63756_cov_4.464180 57563..57565 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2604.t1	Gcaud2604.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_53_length_63756_cov_4.464180 55967..57565 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_53_length_63756_cov_4.464180:55967..57565+
coding sequence from alignment at NODE_53_length_63756_cov_4.464180:55967..57565+

mRNA sequence

>Gcaud2604.t1 ID=Gcaud2604.t1|Name=Gcaud2604.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=533bp
MEFFIRTSCTLLPLFAFLLCPVVSSETEAKFVDTVLTLANGTEYTVQSPS
SVEFIRGDTSRLLIGTVLGTIQLILIDQVKPTQYIFVRTLHEISVGAGRS
ILGITSDPFVPDTYYVSTSSLQWRAQGFPESGWQNGKVEKLRFDAYSDRI
EVVGAAVKGLPVSLDTGAVYGTVVDPVSTNLFVSVATFNNGGAASSVQGD
LPDCIYSSAILKADVRKENVSGVLEWTSDDPSTARLAQTAEESGVSLYAE
GIRSAFQPIILLSGDLIAIDGGANLNSGPKSISCTESVPFEVAEPDKVIR
VEQGRFYGMANRARDQCVFVPARLSAEEARALVPELALPLFTNAEARAQN
VVIGSPTGALEYTAAWFSSLRGSVLGIEEDPFEDRGEFVPGTSSYNLETG
EIVRVSNVSGIWAVMDVYGSVFTADFERNRIAVAVPNVTRKMREQSAIRV
VWPSKGLQGSKVHIVVTRSYSREVTIGGYRAKCRKGARQINKMREAFSVR
VLTCAVPFGRFPRSAVTVTVGNEQLASAFVVV*

spliced messenger RNA

>Gcaud2604.t1 ID=Gcaud2604.t1|Name=Gcaud2604.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1599bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:55967..57565+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTTCTTCATCCGAACCTCATGTACTCTGCTGCCGCTGTTCGCCTT
CCTACTTTGCCCAGTTGTCTCTTCGGAAACGGAAGCTAAGTTCGTCGACA
CCGTTCTCACGCTCGCAAACGGAACAGAATACACAGTTCAAAGTCCCAGT
TCTGTCGAGTTCATTCGCGGAGATACTTCTCGTTTACTCATCGGCACGGT
GCTAGGAACCATTCAATTGATTCTCATTGATCAAGTGAAGCCCACTCAAT
ACATATTTGTTCGCACATTGCACGAGATCTCTGTTGGCGCAGGTCGTAGT
ATTCTCGGCATTACGTCAGACCCATTTGTTCCAGACACGTATTACGTTTC
AACAAGTTCTTTACAATGGAGGGCTCAGGGGTTTCCCGAATCTGGCTGGC
AGAACGGCAAGGTTGAGAAGCTACGCTTTGATGCATATTCCGATCGCATT
GAAGTGGTGGGTGCAGCTGTAAAGGGTCTTCCAGTGTCTCTGGACACTGG
AGCAGTGTACGGCACAGTGGTGGATCCTGTGTCGACGAACTTGTTTGTGT
CAGTGGCCACGTTCAACAACGGAGGTGCCGCATCATCTGTGCAAGGCGAC
CTTCCAGATTGCATCTACTCGTCAGCCATTCTGAAGGCGGACGTGAGGAA
AGAAAACGTGAGTGGTGTGTTGGAATGGACATCGGATGACCCTTCAACTG
CCCGTCTTGCACAGACAGCCGAAGAATCGGGTGTGTCTTTATACGCAGAG
GGGATTCGCAGCGCGTTCCAACCTATTATACTTCTATCGGGGGATTTAAT
TGCGATCGATGGAGGTGCGAATTTGAATTCGGGTCCGAAGAGCATTTCAT
GCACGGAGTCTGTTCCGTTTGAAGTGGCGGAGCCGGACAAGGTGATTCGG
GTGGAACAAGGAAGATTCTACGGAATGGCGAATCGAGCGAGGGATCAATG
CGTGTTCGTACCAGCGCGTCTGTCCGCAGAAGAAGCTCGTGCGCTGGTGC
CAGAACTTGCGCTGCCGTTGTTCACAAACGCAGAGGCCAGAGCACAGAAT
GTTGTGATAGGCAGTCCAACTGGAGCGCTCGAATACACGGCGGCGTGGTT
TAGTTCTCTGCGGGGGAGTGTGCTGGGAATCGAAGAAGACCCTTTTGAGG
ATCGAGGAGAGTTTGTGCCTGGTACATCGTCTTATAATCTGGAGACGGGG
GAGATCGTTCGGGTGTCAAACGTCTCAGGGATATGGGCGGTAATGGATGT
GTATGGAAGCGTATTCACGGCGGATTTCGAAAGAAATCGGATCGCAGTTG
CGGTACCGAACGTGACGCGCAAGATGAGAGAACAAAGCGCGATTCGAGTG
GTGTGGCCTTCAAAAGGGTTGCAGGGAAGCAAGGTGCACATCGTGGTGAC
AAGAAGCTACTCTCGTGAGGTGACCATCGGGGGATACAGAGCAAAGTGTA
GAAAGGGAGCGCGTCAAATTAACAAGATGCGCGAAGCGTTCTCTGTGCGA
GTGTTGACGTGTGCGGTGCCTTTCGGAAGGTTCCCAAGGAGCGCCGTGAC
GGTGACGGTAGGAAACGAACAGTTAGCCAGCGCGTTCGTAGTTGTATGA

protein sequence of Gcaud2604.t1

>Gcaud2604.t1 ID=Gcaud2604.t1|Name=Gcaud2604.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=533bp
MEFFIRTSCTLLPLFAFLLCPVVSSETEAKFVDTVLTLANGTEYTVQSPS
SVEFIRGDTSRLLIGTVLGTIQLILIDQVKPTQYIFVRTLHEISVGAGRS
ILGITSDPFVPDTYYVSTSSLQWRAQGFPESGWQNGKVEKLRFDAYSDRI
EVVGAAVKGLPVSLDTGAVYGTVVDPVSTNLFVSVATFNNGGAASSVQGD
LPDCIYSSAILKADVRKENVSGVLEWTSDDPSTARLAQTAEESGVSLYAE
GIRSAFQPIILLSGDLIAIDGGANLNSGPKSISCTESVPFEVAEPDKVIR
VEQGRFYGMANRARDQCVFVPARLSAEEARALVPELALPLFTNAEARAQN
VVIGSPTGALEYTAAWFSSLRGSVLGIEEDPFEDRGEFVPGTSSYNLETG
EIVRVSNVSGIWAVMDVYGSVFTADFERNRIAVAVPNVTRKMREQSAIRV
VWPSKGLQGSKVHIVVTRSYSREVTIGGYRAKCRKGARQINKMREAFSVR
VLTCAVPFGRFPRSAVTVTVGNEQLASAFVVV*

mRNA from alignment at NODE_53_length_63756_cov_4.464180:55967..57565+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2604.t1 ID=Gcaud2604.t1|Name=Gcaud2604.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1599bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:55967..57565+ (Gracilaria caudata M_176_S67 male)
ATGGAGTTCTTCATCCGAACCTCATGTACTCTGCTGCCGCTGTTCGCCTT
CCTACTTTGCCCAGTTGTCTCTTCGGAAACGGAAGCTAAGTTCGTCGACA
CCGTTCTCACGCTCGCAAACGGAACAGAATACACAGTTCAAAGTCCCAGT
TCTGTCGAGTTCATTCGCGGAGATACTTCTCGTTTACTCATCGGCACGGT
GCTAGGAACCATTCAATTGATTCTCATTGATCAAGTGAAGCCCACTCAAT
ACATATTTGTTCGCACATTGCACGAGATCTCTGTTGGCGCAGGTCGTAGT
ATTCTCGGCATTACGTCAGACCCATTTGTTCCAGACACGTATTACGTTTC
AACAAGTTCTTTACAATGGAGGGCTCAGGGGTTTCCCGAATCTGGCTGGC
AGAACGGCAAGGTTGAGAAGCTACGCTTTGATGCATATTCCGATCGCATT
GAAGTGGTGGGTGCAGCTGTAAAGGGTCTTCCAGTGTCTCTGGACACTGG
AGCAGTGTACGGCACAGTGGTGGATCCTGTGTCGACGAACTTGTTTGTGT
CAGTGGCCACGTTCAACAACGGAGGTGCCGCATCATCTGTGCAAGGCGAC
CTTCCAGATTGCATCTACTCGTCAGCCATTCTGAAGGCGGACGTGAGGAA
AGAAAACGTGAGTGGTGTGTTGGAATGGACATCGGATGACCCTTCAACTG
CCCGTCTTGCACAGACAGCCGAAGAATCGGGTGTGTCTTTATACGCAGAG
GGGATTCGCAGCGCGTTCCAACCTATTATACTTCTATCGGGGGATTTAAT
TGCGATCGATGGAGGTGCGAATTTGAATTCGGGTCCGAAGAGCATTTCAT
GCACGGAGTCTGTTCCGTTTGAAGTGGCGGAGCCGGACAAGGTGATTCGG
GTGGAACAAGGAAGATTCTACGGAATGGCGAATCGAGCGAGGGATCAATG
CGTGTTCGTACCAGCGCGTCTGTCCGCAGAAGAAGCTCGTGCGCTGGTGC
CAGAACTTGCGCTGCCGTTGTTCACAAACGCAGAGGCCAGAGCACAGAAT
GTTGTGATAGGCAGTCCAACTGGAGCGCTCGAATACACGGCGGCGTGGTT
TAGTTCTCTGCGGGGGAGTGTGCTGGGAATCGAAGAAGACCCTTTTGAGG
ATCGAGGAGAGTTTGTGCCTGGTACATCGTCTTATAATCTGGAGACGGGG
GAGATCGTTCGGGTGTCAAACGTCTCAGGGATATGGGCGGTAATGGATGT
GTATGGAAGCGTATTCACGGCGGATTTCGAAAGAAATCGGATCGCAGTTG
CGGTACCGAACGTGACGCGCAAGATGAGAGAACAAAGCGCGATTCGAGTG
GTGTGGCCTTCAAAAGGGTTGCAGGGAAGCAAGGTGCACATCGTGGTGAC
AAGAAGCTACTCTCGTGAGGTGACCATCGGGGGATACAGAGCAAAGTGTA
GAAAGGGAGCGCGTCAAATTAACAAGATGCGCGAAGCGTTCTCTGTGCGA
GTGTTGACGTGTGCGGTGCCTTTCGGAAGGTTCCCAAGGAGCGCCGTGAC
GGTGACGGTAGGAAACGAACAGTTAGCCAGCGCGTTCGTAGTTGTATGA

Coding sequence (CDS) from alignment at NODE_53_length_63756_cov_4.464180:55967..57565+

>Gcaud2604.t1 ID=Gcaud2604.t1|Name=Gcaud2604.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1599bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:55967..57565+ (Gracilaria caudata M_176_S67 male)
ATGGAGTTCTTCATCCGAACCTCATGTACTCTGCTGCCGCTGTTCGCCTT
CCTACTTTGCCCAGTTGTCTCTTCGGAAACGGAAGCTAAGTTCGTCGACA
CCGTTCTCACGCTCGCAAACGGAACAGAATACACAGTTCAAAGTCCCAGT
TCTGTCGAGTTCATTCGCGGAGATACTTCTCGTTTACTCATCGGCACGGT
GCTAGGAACCATTCAATTGATTCTCATTGATCAAGTGAAGCCCACTCAAT
ACATATTTGTTCGCACATTGCACGAGATCTCTGTTGGCGCAGGTCGTAGT
ATTCTCGGCATTACGTCAGACCCATTTGTTCCAGACACGTATTACGTTTC
AACAAGTTCTTTACAATGGAGGGCTCAGGGGTTTCCCGAATCTGGCTGGC
AGAACGGCAAGGTTGAGAAGCTACGCTTTGATGCATATTCCGATCGCATT
GAAGTGGTGGGTGCAGCTGTAAAGGGTCTTCCAGTGTCTCTGGACACTGG
AGCAGTGTACGGCACAGTGGTGGATCCTGTGTCGACGAACTTGTTTGTGT
CAGTGGCCACGTTCAACAACGGAGGTGCCGCATCATCTGTGCAAGGCGAC
CTTCCAGATTGCATCTACTCGTCAGCCATTCTGAAGGCGGACGTGAGGAA
AGAAAACGTGAGTGGTGTGTTGGAATGGACATCGGATGACCCTTCAACTG
CCCGTCTTGCACAGACAGCCGAAGAATCGGGTGTGTCTTTATACGCAGAG
GGGATTCGCAGCGCGTTCCAACCTATTATACTTCTATCGGGGGATTTAAT
TGCGATCGATGGAGGTGCGAATTTGAATTCGGGTCCGAAGAGCATTTCAT
GCACGGAGTCTGTTCCGTTTGAAGTGGCGGAGCCGGACAAGGTGATTCGG
GTGGAACAAGGAAGATTCTACGGAATGGCGAATCGAGCGAGGGATCAATG
CGTGTTCGTACCAGCGCGTCTGTCCGCAGAAGAAGCTCGTGCGCTGGTGC
CAGAACTTGCGCTGCCGTTGTTCACAAACGCAGAGGCCAGAGCACAGAAT
GTTGTGATAGGCAGTCCAACTGGAGCGCTCGAATACACGGCGGCGTGGTT
TAGTTCTCTGCGGGGGAGTGTGCTGGGAATCGAAGAAGACCCTTTTGAGG
ATCGAGGAGAGTTTGTGCCTGGTACATCGTCTTATAATCTGGAGACGGGG
GAGATCGTTCGGGTGTCAAACGTCTCAGGGATATGGGCGGTAATGGATGT
GTATGGAAGCGTATTCACGGCGGATTTCGAAAGAAATCGGATCGCAGTTG
CGGTACCGAACGTGACGCGCAAGATGAGAGAACAAAGCGCGATTCGAGTG
GTGTGGCCTTCAAAAGGGTTGCAGGGAAGCAAGGTGCACATCGTGGTGAC
AAGAAGCTACTCTCGTGAGGTGACCATCGGGGGATACAGAGCAAAGTGTA
GAAAGGGAGCGCGTCAAATTAACAAGATGCGCGAAGCGTTCTCTGTGCGA
GTGTTGACGTGTGCGGTGCCTTTCGGAAGGTTCCCAAGGAGCGCCGTGAC
GGTGACGGTAGGAAACGAACAGTTAGCCAGCGCGTTCGTAGTTGTATGA