Gcaud2603.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2603.t1
Unique NameGcaud2603.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length240
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_53_length_63756_cov_4.464180contigNODE_53_length_63756_cov_4.464180:53685..54404 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog61853.ENSNLEP00000018332
Preferred nameTHTPA
PFAMsCYTH
Max annot lvl33208|Metazoa
KEGG rclassRC00002
KEGG koko:K05307
KEGG ReactionR00618
KEGG Pathwayko00730,ko01100,map00730,map01100
GOsGO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006091,GO:0006725,GO:0006732,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0017144,GO:0019637,GO:0034641,GO:0042357,GO:0042723,GO:0043167,GO:0043169,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0050333,GO:0051186,GO:0071704,GO:0072527,GO:1901360,GO:1901564
Evalue1.37e-11
EggNOG OGs2DAPC@1|root,2S5G9@2759|Eukaryota,3A0GW@33154|Opisthokonta,3BHKC@33208|Metazoa,3CZTQ@33213|Bilateria,48ANH@7711|Chordata,490XV@7742|Vertebrata,3JD2A@40674|Mammalia,35KE0@314146|Euarchontoglires,4ME0Y@9443|Primates
EC3.6.1.28
Descriptionthiamin-triphosphatase activity
COG categoryF
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2603Gcaud2603Gracilaria caudata M_176_S67 malegeneNODE_53_length_63756_cov_4.464180 53685..54404 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2603.t1.stop1Gcaud2603.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_53_length_63756_cov_4.464180 53685..53687 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2603.t1.CDS1Gcaud2603.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_53_length_63756_cov_4.464180 53685..54404 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2603.t1.exon1Gcaud2603.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_53_length_63756_cov_4.464180 53685..54404 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2603.t1.start1Gcaud2603.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_53_length_63756_cov_4.464180 54402..54404 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2603.t1Gcaud2603.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_53_length_63756_cov_4.464180 53685..54404 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2603.t1 ID=Gcaud2603.t1|Name=Gcaud2603.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=240bp
MLAFLPATSPFLARHVVRRSTWKCCTSSFLKRPIHAKAAQDLIEVESRFH
VTPQAKRAFNVLAGDCKQIRFKDRYYCEQLALLDKWLRQRDHQWELKIPV
NVRASTSHRGAVAYKELLGNAALQHVNALGFSTKEMKVYACITTVRSMWK
FDSRMPWGDYDMQITADECFADDGFKYNIGEIEVLVTDDEHVDGATKALE
RTCQQLKLEKIGSSGGKLMRYLYEKKPELYQTLHANGVV*
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spliced messenger RNA

>Gcaud2603.t1 ID=Gcaud2603.t1|Name=Gcaud2603.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=720bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:53685..54404- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTAGCCTTCCTTCCCGCCACCTCTCCTTTTCTCGCTCGCCACGTTGT
GCGACGCTCAACCTGGAAGTGCTGCACATCCTCATTTCTCAAACGTCCAA
TACACGCCAAAGCAGCGCAAGATCTCATCGAAGTTGAATCGCGATTTCAT
GTCACCCCACAAGCAAAACGAGCGTTCAACGTACTCGCCGGAGATTGCAA
GCAGATTCGCTTCAAAGATCGATACTATTGCGAACAGTTAGCGTTGCTGG
ACAAATGGTTACGCCAACGAGATCATCAGTGGGAACTTAAGATCCCCGTC
AACGTCCGTGCTTCTACCTCGCATCGTGGAGCCGTTGCGTACAAAGAACT
GCTTGGAAACGCCGCTTTACAACATGTTAATGCGCTTGGGTTTTCGACGA
AGGAAATGAAAGTTTATGCTTGTATCACTACTGTGCGAAGTATGTGGAAG
TTCGATTCACGAATGCCGTGGGGAGATTATGATATGCAAATCACTGCAGA
TGAATGTTTCGCAGATGACGGATTCAAGTATAACATCGGTGAAATTGAGG
TTCTTGTGACTGACGATGAACACGTTGATGGTGCCACAAAAGCTCTGGAA
CGTACCTGTCAGCAACTGAAACTTGAGAAGATTGGAAGCAGCGGCGGTAA
GCTGATGCGCTACTTGTATGAAAAGAAACCAGAGCTCTACCAAACCCTGC
ATGCGAACGGCGTCGTGTGA
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protein sequence of Gcaud2603.t1

>Gcaud2603.t1 ID=Gcaud2603.t1|Name=Gcaud2603.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=240bp
MLAFLPATSPFLARHVVRRSTWKCCTSSFLKRPIHAKAAQDLIEVESRFH
VTPQAKRAFNVLAGDCKQIRFKDRYYCEQLALLDKWLRQRDHQWELKIPV
NVRASTSHRGAVAYKELLGNAALQHVNALGFSTKEMKVYACITTVRSMWK
FDSRMPWGDYDMQITADECFADDGFKYNIGEIEVLVTDDEHVDGATKALE
RTCQQLKLEKIGSSGGKLMRYLYEKKPELYQTLHANGVV*
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mRNA from alignment at NODE_53_length_63756_cov_4.464180:53685..54404-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2603.t1 ID=Gcaud2603.t1|Name=Gcaud2603.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=720bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:53685..54404- (Gracilaria caudata M_176_S67 male)
ATGTTAGCCTTCCTTCCCGCCACCTCTCCTTTTCTCGCTCGCCACGTTGT
GCGACGCTCAACCTGGAAGTGCTGCACATCCTCATTTCTCAAACGTCCAA
TACACGCCAAAGCAGCGCAAGATCTCATCGAAGTTGAATCGCGATTTCAT
GTCACCCCACAAGCAAAACGAGCGTTCAACGTACTCGCCGGAGATTGCAA
GCAGATTCGCTTCAAAGATCGATACTATTGCGAACAGTTAGCGTTGCTGG
ACAAATGGTTACGCCAACGAGATCATCAGTGGGAACTTAAGATCCCCGTC
AACGTCCGTGCTTCTACCTCGCATCGTGGAGCCGTTGCGTACAAAGAACT
GCTTGGAAACGCCGCTTTACAACATGTTAATGCGCTTGGGTTTTCGACGA
AGGAAATGAAAGTTTATGCTTGTATCACTACTGTGCGAAGTATGTGGAAG
TTCGATTCACGAATGCCGTGGGGAGATTATGATATGCAAATCACTGCAGA
TGAATGTTTCGCAGATGACGGATTCAAGTATAACATCGGTGAAATTGAGG
TTCTTGTGACTGACGATGAACACGTTGATGGTGCCACAAAAGCTCTGGAA
CGTACCTGTCAGCAACTGAAACTTGAGAAGATTGGAAGCAGCGGCGGTAA
GCTGATGCGCTACTTGTATGAAAAGAAACCAGAGCTCTACCAAACCCTGC
ATGCGAACGGCGTCGTGTGA
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Coding sequence (CDS) from alignment at NODE_53_length_63756_cov_4.464180:53685..54404-

>Gcaud2603.t1 ID=Gcaud2603.t1|Name=Gcaud2603.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=720bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:53685..54404- (Gracilaria caudata M_176_S67 male)
ATGTTAGCCTTCCTTCCCGCCACCTCTCCTTTTCTCGCTCGCCACGTTGT
GCGACGCTCAACCTGGAAGTGCTGCACATCCTCATTTCTCAAACGTCCAA
TACACGCCAAAGCAGCGCAAGATCTCATCGAAGTTGAATCGCGATTTCAT
GTCACCCCACAAGCAAAACGAGCGTTCAACGTACTCGCCGGAGATTGCAA
GCAGATTCGCTTCAAAGATCGATACTATTGCGAACAGTTAGCGTTGCTGG
ACAAATGGTTACGCCAACGAGATCATCAGTGGGAACTTAAGATCCCCGTC
AACGTCCGTGCTTCTACCTCGCATCGTGGAGCCGTTGCGTACAAAGAACT
GCTTGGAAACGCCGCTTTACAACATGTTAATGCGCTTGGGTTTTCGACGA
AGGAAATGAAAGTTTATGCTTGTATCACTACTGTGCGAAGTATGTGGAAG
TTCGATTCACGAATGCCGTGGGGAGATTATGATATGCAAATCACTGCAGA
TGAATGTTTCGCAGATGACGGATTCAAGTATAACATCGGTGAAATTGAGG
TTCTTGTGACTGACGATGAACACGTTGATGGTGCCACAAAAGCTCTGGAA
CGTACCTGTCAGCAACTGAAACTTGAGAAGATTGGAAGCAGCGGCGGTAA
GCTGATGCGCTACTTGTATGAAAAGAAACCAGAGCTCTACCAAACCCTGC
ATGCGAACGGCGTCGTGTGA
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