Gcaud2602.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2602.t1
Unique NameGcaud2602.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length221
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_53_length_63756_cov_4.464180contigNODE_53_length_63756_cov_4.464180:51239..51901 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2602Gcaud2602Gracilaria caudata M_176_S67 malegeneNODE_53_length_63756_cov_4.464180 51239..51901 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2602.t1.stop1Gcaud2602.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_53_length_63756_cov_4.464180 51239..51241 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2602.t1.CDS1Gcaud2602.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_53_length_63756_cov_4.464180 51239..51901 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2602.t1.exon1Gcaud2602.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_53_length_63756_cov_4.464180 51239..51901 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2602.t1.start1Gcaud2602.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_53_length_63756_cov_4.464180 51899..51901 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2602.t1Gcaud2602.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_53_length_63756_cov_4.464180 51239..51901 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2602.t1 ID=Gcaud2602.t1|Name=Gcaud2602.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=221bp
MAALSHSELILEKERQKFVRRSEYRIKKYSCEQSMVDLALLIFLDSDDRS
KDQYGIQLCERAIKQHNSASAMFALAQHFYLDGTEEQKQRLSPLLEASVK
LHPSKETLYFLGKVLFYGKFGQTDRLRGTSLLQRALKVGDDYIVMGSLAK
MYLLHPNPVVKKKEALQMFKRAIEIGNDPYHMRQLARLYETGTLVLKACE
RCRLKWTQRADECEQNGGAW*
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spliced messenger RNA

>Gcaud2602.t1 ID=Gcaud2602.t1|Name=Gcaud2602.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=663bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:51239..51901- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCACTATCACACTCAGAGCTGATATTGGAGAAAGAGCGTCAAAA
ATTCGTTCGCCGGAGCGAGTACAGAATCAAAAAGTACAGTTGTGAACAAT
CTATGGTAGATCTGGCCTTGCTCATCTTTCTGGACTCTGACGACCGTAGC
AAAGATCAATATGGTATACAACTATGCGAACGTGCAATCAAACAACATAA
CAGCGCTTCGGCGATGTTTGCGCTTGCACAACATTTCTACCTCGACGGTA
CGGAAGAACAGAAACAGCGGTTGAGTCCTTTGCTCGAAGCGTCGGTTAAG
CTACATCCGAGCAAAGAAACGCTGTATTTCTTGGGCAAGGTTTTGTTTTA
TGGCAAGTTCGGTCAAACAGATAGACTGCGAGGGACCTCTCTGCTTCAAC
GTGCACTAAAGGTGGGTGACGATTATATTGTGATGGGCAGTCTGGCTAAG
ATGTACTTGCTGCACCCAAATCCAGTGGTGAAGAAGAAGGAGGCGCTTCA
AATGTTTAAAAGGGCGATTGAAATAGGTAATGACCCGTATCACATGCGGC
AGCTGGCAAGACTGTACGAAACTGGCACGCTAGTGTTGAAGGCCTGTGAG
AGGTGCCGACTGAAATGGACGCAAAGGGCTGACGAATGTGAACAGAATGG
CGGTGCTTGGTGA
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protein sequence of Gcaud2602.t1

>Gcaud2602.t1 ID=Gcaud2602.t1|Name=Gcaud2602.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=221bp
MAALSHSELILEKERQKFVRRSEYRIKKYSCEQSMVDLALLIFLDSDDRS
KDQYGIQLCERAIKQHNSASAMFALAQHFYLDGTEEQKQRLSPLLEASVK
LHPSKETLYFLGKVLFYGKFGQTDRLRGTSLLQRALKVGDDYIVMGSLAK
MYLLHPNPVVKKKEALQMFKRAIEIGNDPYHMRQLARLYETGTLVLKACE
RCRLKWTQRADECEQNGGAW*
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mRNA from alignment at NODE_53_length_63756_cov_4.464180:51239..51901-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2602.t1 ID=Gcaud2602.t1|Name=Gcaud2602.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=663bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:51239..51901- (Gracilaria caudata M_176_S67 male)
ATGGCCGCACTATCACACTCAGAGCTGATATTGGAGAAAGAGCGTCAAAA
ATTCGTTCGCCGGAGCGAGTACAGAATCAAAAAGTACAGTTGTGAACAAT
CTATGGTAGATCTGGCCTTGCTCATCTTTCTGGACTCTGACGACCGTAGC
AAAGATCAATATGGTATACAACTATGCGAACGTGCAATCAAACAACATAA
CAGCGCTTCGGCGATGTTTGCGCTTGCACAACATTTCTACCTCGACGGTA
CGGAAGAACAGAAACAGCGGTTGAGTCCTTTGCTCGAAGCGTCGGTTAAG
CTACATCCGAGCAAAGAAACGCTGTATTTCTTGGGCAAGGTTTTGTTTTA
TGGCAAGTTCGGTCAAACAGATAGACTGCGAGGGACCTCTCTGCTTCAAC
GTGCACTAAAGGTGGGTGACGATTATATTGTGATGGGCAGTCTGGCTAAG
ATGTACTTGCTGCACCCAAATCCAGTGGTGAAGAAGAAGGAGGCGCTTCA
AATGTTTAAAAGGGCGATTGAAATAGGTAATGACCCGTATCACATGCGGC
AGCTGGCAAGACTGTACGAAACTGGCACGCTAGTGTTGAAGGCCTGTGAG
AGGTGCCGACTGAAATGGACGCAAAGGGCTGACGAATGTGAACAGAATGG
CGGTGCTTGGTGA
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Coding sequence (CDS) from alignment at NODE_53_length_63756_cov_4.464180:51239..51901-

>Gcaud2602.t1 ID=Gcaud2602.t1|Name=Gcaud2602.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=663bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:51239..51901- (Gracilaria caudata M_176_S67 male)
ATGGCCGCACTATCACACTCAGAGCTGATATTGGAGAAAGAGCGTCAAAA
ATTCGTTCGCCGGAGCGAGTACAGAATCAAAAAGTACAGTTGTGAACAAT
CTATGGTAGATCTGGCCTTGCTCATCTTTCTGGACTCTGACGACCGTAGC
AAAGATCAATATGGTATACAACTATGCGAACGTGCAATCAAACAACATAA
CAGCGCTTCGGCGATGTTTGCGCTTGCACAACATTTCTACCTCGACGGTA
CGGAAGAACAGAAACAGCGGTTGAGTCCTTTGCTCGAAGCGTCGGTTAAG
CTACATCCGAGCAAAGAAACGCTGTATTTCTTGGGCAAGGTTTTGTTTTA
TGGCAAGTTCGGTCAAACAGATAGACTGCGAGGGACCTCTCTGCTTCAAC
GTGCACTAAAGGTGGGTGACGATTATATTGTGATGGGCAGTCTGGCTAAG
ATGTACTTGCTGCACCCAAATCCAGTGGTGAAGAAGAAGGAGGCGCTTCA
AATGTTTAAAAGGGCGATTGAAATAGGTAATGACCCGTATCACATGCGGC
AGCTGGCAAGACTGTACGAAACTGGCACGCTAGTGTTGAAGGCCTGTGAG
AGGTGCCGACTGAAATGGACGCAAAGGGCTGACGAATGTGAACAGAATGG
CGGTGCTTGGTGA
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