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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 159749.K0RN92 |
| Preferred name | CMPK2 |
| PFAMs | Thymidylate_kin |
| Max annot lvl | 2759|Eukaryota |
| KEGG rclass | RC00002 |
| KEGG ko | ko:K13809 |
| KEGG Reaction | R00158,R00512,R01665 |
| KEGG Pathway | ko00240,ko01100,map00240,map01100 |
| KEGG Module | M00052 |
| GOs | GO:0002237,GO:0003674,GO:0003824,GO:0004127,GO:0004550,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006165,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0010033,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0032496,GO:0033862,GO:0033993,GO:0034641,GO:0034654,GO:0042221,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046939,GO:0046940,GO:0050145,GO:0050896,GO:0051704,GO:0051707,GO:0051716,GO:0055086,GO:0070887,GO:0071216,GO:0071219,GO:0071222,GO:0071310,GO:0071396,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1901701 |
| Evalue | 5.53e-100 |
| EggNOG OGs | COG0125@1|root,KOG3327@2759|Eukaryota,2XDRK@2836|Bacillariophyta |
| EC | 2.7.4.14 |
| Description | dTDP metabolic process |
| COG category | F |
| BRITE | ko00000,ko00001,ko00002,ko01000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2601.t1.start1 | Gcaud2601.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_53_length_63756_cov_4.464180 46783..46785 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2601.t1.stop1 | Gcaud2601.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_53_length_63756_cov_4.464180 48997..48999 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud2601.t1 ID=Gcaud2601.t1|Name=Gcaud2601.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=739bp METNVDVETQNVKGLFSDFLAAVTILNNSKKLNQLDKRLEKQEGSLDAFF DLLNVVGYNLFKKPTNPPFVVVIEGLDGTGKTTLVNSLAEQVYEIEGQKF NGHAVGTPTASVASIRDIFDKCGGLVSRAFYMVTNYILQHEMRVESERDP FAIFFVDRWYSSTCAYSIGWKNTSGGPESVDGLDSSLFEWPKDLDVPNLM IVLQVDGKIRKERIRRRGKLLNYNPWDDRLTKDDNLGKRIVRAWERISGP REAVHLSANSSKQDVLRESREIVRENMLRHFLPGLYFRQNPLGLFRWISS YLGQCHEKTGLRSGHTTWSFQICANNTENREVALQSHEIQMVGEDSILSF SSDLFQGQQKSCRNAMASAAWIQGEYPNEYRWRADGVTCMVTESECNLMG ISPCPSVMIYAHTSICERQEHNDKFQEENEMIRSSHREGISQQNALHELK TGNFVSRFVPLRMKLTIGSLDRHEELRSYEWVRKRSDLENGWSVPEQGIP LPLSHDFLNGRTLLPVTLAFLGTHTSGKKTLGERLANIYEWSFQPELGDI LRDKDKIVAAGHRTGDGKAEKDSSGKEWDDRIHEAECERDRASTFSRVVE TWHVGNTAWALFRKSLAVSEQNAEEFIDRAREAIKFELSKSVVLLVHLRI DVQTSLRRRQLEENSKRIPMKSEHEECAELHEALDVKGVQLLSEFRGLSI PVLQIDNCEDGEQAIDKSVQQIVHFVNCNLWRKVRVLP* back to topspliced messenger RNA >Gcaud2601.t1 ID=Gcaud2601.t1|Name=Gcaud2601.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2217bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:46783..48999+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGAAACAAACGTTGACGTTGAGACCCAGAACGTGAAGGGTTTATTCAG CGATTTCTTAGCAGCCGTAACCATTCTTAACAACAGCAAGAAGTTGAATC AACTTGACAAGCGACTTGAGAAGCAAGAGGGCAGTCTAGATGCTTTCTTC GATCTTCTCAACGTCGTCGGATACAATCTGTTTAAGAAGCCCACCAACCC ACCCTTTGTTGTGGTAATAGAAGGTCTTGATGGTACTGGAAAAACTACTC TTGTCAATTCCCTCGCAGAACAAGTATATGAGATAGAGGGACAGAAATTC AATGGACATGCAGTGGGAACGCCGACTGCTTCCGTTGCTTCAATCCGAGA TATTTTCGATAAATGTGGGGGTTTGGTATCCAGGGCGTTCTATATGGTGA CCAACTACATCTTGCAACACGAAATGCGTGTCGAGTCTGAAAGAGACCCT TTTGCCATCTTTTTTGTTGATCGTTGGTATTCCTCAACGTGTGCCTACTC CATAGGATGGAAAAACACTTCTGGCGGACCCGAGTCTGTTGATGGATTAG ATTCTTCTCTTTTCGAATGGCCGAAGGACTTGGACGTTCCAAACCTAATG ATTGTGCTCCAAGTTGACGGTAAAATCAGGAAAGAGCGAATCCGCCGACG GGGAAAACTCTTGAACTACAATCCATGGGATGATCGTCTCACCAAGGATG ATAATCTCGGAAAGCGTATCGTGAGAGCGTGGGAACGAATCTCTGGCCCT CGAGAAGCCGTTCACCTATCTGCAAATTCTTCAAAGCAAGACGTTCTGAG AGAAAGTCGAGAGATTGTAAGGGAAAATATGCTCCGTCACTTTCTACCTG GACTGTACTTTCGGCAGAATCCTCTGGGATTGTTTCGATGGATTTCGTCA TATCTTGGACAATGCCACGAAAAGACTGGACTAAGAAGCGGGCACACGAC GTGGAGTTTTCAAATCTGCGCAAACAATACAGAAAATAGGGAGGTAGCTT TGCAGAGCCACGAGATTCAGATGGTCGGTGAAGATAGTATTCTTTCATTC TCGAGCGACCTCTTCCAAGGCCAGCAAAAGTCTTGCAGAAACGCCATGGC CTCTGCTGCCTGGATTCAAGGAGAATATCCGAATGAGTACCGCTGGAGAG CAGACGGGGTAACGTGTATGGTTACAGAATCGGAGTGCAACCTAATGGGC ATATCTCCGTGCCCGAGTGTAATGATTTATGCCCATACATCGATCTGCGA ACGACAGGAGCACAATGACAAGTTTCAAGAGGAGAACGAAATGATACGCT CGTCACACCGTGAAGGCATCTCGCAGCAAAACGCGCTGCACGAACTCAAG ACCGGAAACTTTGTCTCGAGATTTGTCCCATTGCGAATGAAACTTACAAT TGGAAGCCTCGATCGTCATGAGGAACTGCGTTCGTACGAGTGGGTCCGCA AGCGCAGCGATTTGGAAAATGGATGGTCTGTCCCAGAACAAGGTATTCCC TTACCATTGTCACATGATTTTCTCAACGGTAGGACTTTGCTACCCGTTAC GCTCGCCTTTCTTGGCACGCATACTTCTGGCAAAAAAACGCTCGGAGAGC GTCTGGCAAACATTTATGAGTGGTCATTTCAACCTGAACTTGGCGACATT CTACGAGACAAGGACAAGATTGTTGCGGCTGGCCATAGAACTGGAGACGG TAAAGCAGAAAAAGATTCCTCAGGAAAGGAATGGGACGACAGAATTCACG AAGCGGAATGCGAACGGGACAGAGCGTCCACGTTTTCGCGAGTCGTGGAG ACTTGGCATGTAGGCAACACTGCATGGGCTTTGTTTCGAAAATCGTTAGC CGTATCGGAACAGAACGCCGAAGAATTCATCGATAGAGCTAGGGAGGCGA TTAAGTTCGAACTCAGCAAGTCTGTTGTCCTTCTCGTTCATTTGAGAATT GATGTGCAAACATCACTTCGCCGCCGACAGCTCGAAGAAAATTCCAAACG CATACCGATGAAAAGTGAACATGAAGAATGTGCTGAGCTCCACGAGGCTT TGGACGTGAAAGGTGTTCAGCTTCTTTCAGAATTCCGAGGTCTGAGCATT CCTGTGCTTCAAATAGACAACTGTGAAGATGGGGAGCAAGCGATAGACAA ATCTGTGCAGCAGATAGTTCACTTTGTGAACTGCAACCTATGGCGTAAGG TGAGAGTGTTACCGTAG back to topprotein sequence of Gcaud2601.t1 >Gcaud2601.t1 ID=Gcaud2601.t1|Name=Gcaud2601.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=739bp
METNVDVETQNVKGLFSDFLAAVTILNNSKKLNQLDKRLEKQEGSLDAFF DLLNVVGYNLFKKPTNPPFVVVIEGLDGTGKTTLVNSLAEQVYEIEGQKF NGHAVGTPTASVASIRDIFDKCGGLVSRAFYMVTNYILQHEMRVESERDP FAIFFVDRWYSSTCAYSIGWKNTSGGPESVDGLDSSLFEWPKDLDVPNLM IVLQVDGKIRKERIRRRGKLLNYNPWDDRLTKDDNLGKRIVRAWERISGP REAVHLSANSSKQDVLRESREIVRENMLRHFLPGLYFRQNPLGLFRWISS YLGQCHEKTGLRSGHTTWSFQICANNTENREVALQSHEIQMVGEDSILSF SSDLFQGQQKSCRNAMASAAWIQGEYPNEYRWRADGVTCMVTESECNLMG ISPCPSVMIYAHTSICERQEHNDKFQEENEMIRSSHREGISQQNALHELK TGNFVSRFVPLRMKLTIGSLDRHEELRSYEWVRKRSDLENGWSVPEQGIP LPLSHDFLNGRTLLPVTLAFLGTHTSGKKTLGERLANIYEWSFQPELGDI LRDKDKIVAAGHRTGDGKAEKDSSGKEWDDRIHEAECERDRASTFSRVVE TWHVGNTAWALFRKSLAVSEQNAEEFIDRAREAIKFELSKSVVLLVHLRI DVQTSLRRRQLEENSKRIPMKSEHEECAELHEALDVKGVQLLSEFRGLSI PVLQIDNCEDGEQAIDKSVQQIVHFVNCNLWRKVRVLP* back to topmRNA from alignment at NODE_53_length_63756_cov_4.464180:46783..48999+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud2601.t1 ID=Gcaud2601.t1|Name=Gcaud2601.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2217bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:46783..48999+ (Gracilaria caudata M_176_S67 male) ATGGAAACAAACGTTGACGTTGAGACCCAGAACGTGAAGGGTTTATTCAG
CGATTTCTTAGCAGCCGTAACCATTCTTAACAACAGCAAGAAGTTGAATC
AACTTGACAAGCGACTTGAGAAGCAAGAGGGCAGTCTAGATGCTTTCTTC
GATCTTCTCAACGTCGTCGGATACAATCTGTTTAAGAAGCCCACCAACCC
ACCCTTTGTTGTGGTAATAGAAGGTCTTGATGGTACTGGAAAAACTACTC
TTGTCAATTCCCTCGCAGAACAAGTATATGAGATAGAGGGACAGAAATTC
AATGGACATGCAGTGGGAACGCCGACTGCTTCCGTTGCTTCAATCCGAGA
TATTTTCGATAAATGTGGGGGTTTGGTATCCAGGGCGTTCTATATGGTGA
CCAACTACATCTTGCAACACGAAATGCGTGTCGAGTCTGAAAGAGACCCT
TTTGCCATCTTTTTTGTTGATCGTTGGTATTCCTCAACGTGTGCCTACTC
CATAGGATGGAAAAACACTTCTGGCGGACCCGAGTCTGTTGATGGATTAG
ATTCTTCTCTTTTCGAATGGCCGAAGGACTTGGACGTTCCAAACCTAATG
ATTGTGCTCCAAGTTGACGGTAAAATCAGGAAAGAGCGAATCCGCCGACG
GGGAAAACTCTTGAACTACAATCCATGGGATGATCGTCTCACCAAGGATG
ATAATCTCGGAAAGCGTATCGTGAGAGCGTGGGAACGAATCTCTGGCCCT
CGAGAAGCCGTTCACCTATCTGCAAATTCTTCAAAGCAAGACGTTCTGAG
AGAAAGTCGAGAGATTGTAAGGGAAAATATGCTCCGTCACTTTCTACCTG
GACTGTACTTTCGGCAGAATCCTCTGGGATTGTTTCGATGGATTTCGTCA
TATCTTGGACAATGCCACGAAAAGACTGGACTAAGAAGCGGGCACACGAC
GTGGAGTTTTCAAATCTGCGCAAACAATACAGAAAATAGGGAGGTAGCTT
TGCAGAGCCACGAGATTCAGATGGTCGGTGAAGATAGTATTCTTTCATTC
TCGAGCGACCTCTTCCAAGGCCAGCAAAAGTCTTGCAGAAACGCCATGGC
CTCTGCTGCCTGGATTCAAGGAGAATATCCGAATGAGTACCGCTGGAGAG
CAGACGGGGTAACGTGTATGGTTACAGAATCGGAGTGCAACCTAATGGGC
ATATCTCCGTGCCCGAGTGTAATGATTTATGCCCATACATCGATCTGCGA
ACGACAGGAGCACAATGACAAGTTTCAAGAGGAGAACGAAATGATACGCT
CGTCACACCGTGAAGGCATCTCGCAGCAAAACGCGCTGCACGAACTCAAG
ACCGGAAACTTTGTCTCGAGATTTGTCCCATTGCGAATGAAACTTACAAT
TGGAAGCCTCGATCGTCATGAGGAACTGCGTTCGTACGAGTGGGTCCGCA
AGCGCAGCGATTTGGAAAATGGATGGTCTGTCCCAGAACAAGGTATTCCC
TTACCATTGTCACATGATTTTCTCAACGGTAGGACTTTGCTACCCGTTAC
GCTCGCCTTTCTTGGCACGCATACTTCTGGCAAAAAAACGCTCGGAGAGC
GTCTGGCAAACATTTATGAGTGGTCATTTCAACCTGAACTTGGCGACATT
CTACGAGACAAGGACAAGATTGTTGCGGCTGGCCATAGAACTGGAGACGG
TAAAGCAGAAAAAGATTCCTCAGGAAAGGAATGGGACGACAGAATTCACG
AAGCGGAATGCGAACGGGACAGAGCGTCCACGTTTTCGCGAGTCGTGGAG
ACTTGGCATGTAGGCAACACTGCATGGGCTTTGTTTCGAAAATCGTTAGC
CGTATCGGAACAGAACGCCGAAGAATTCATCGATAGAGCTAGGGAGGCGA
TTAAGTTCGAACTCAGCAAGTCTGTTGTCCTTCTCGTTCATTTGAGAATT
GATGTGCAAACATCACTTCGCCGCCGACAGCTCGAAGAAAATTCCAAACG
CATACCGATGAAAAGTGAACATGAAGAATGTGCTGAGCTCCACGAGGCTT
TGGACGTGAAAGGTGTTCAGCTTCTTTCAGAATTCCGAGGTCTGAGCATT
CCTGTGCTTCAAATAGACAACTGTGAAGATGGGGAGCAAGCGATAGACAA
ATCTGTGCAGCAGATAGTTCACTTTGTGAACTGCAACCTATGGCGTAAGG
TGAGAGTGTTACCGTAG back to topCoding sequence (CDS) from alignment at NODE_53_length_63756_cov_4.464180:46783..48999+ >Gcaud2601.t1 ID=Gcaud2601.t1|Name=Gcaud2601.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2217bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:46783..48999+ (Gracilaria caudata M_176_S67 male) ATGGAAACAAACGTTGACGTTGAGACCCAGAACGTGAAGGGTTTATTCAG CGATTTCTTAGCAGCCGTAACCATTCTTAACAACAGCAAGAAGTTGAATC AACTTGACAAGCGACTTGAGAAGCAAGAGGGCAGTCTAGATGCTTTCTTC GATCTTCTCAACGTCGTCGGATACAATCTGTTTAAGAAGCCCACCAACCC ACCCTTTGTTGTGGTAATAGAAGGTCTTGATGGTACTGGAAAAACTACTC TTGTCAATTCCCTCGCAGAACAAGTATATGAGATAGAGGGACAGAAATTC AATGGACATGCAGTGGGAACGCCGACTGCTTCCGTTGCTTCAATCCGAGA TATTTTCGATAAATGTGGGGGTTTGGTATCCAGGGCGTTCTATATGGTGA CCAACTACATCTTGCAACACGAAATGCGTGTCGAGTCTGAAAGAGACCCT TTTGCCATCTTTTTTGTTGATCGTTGGTATTCCTCAACGTGTGCCTACTC CATAGGATGGAAAAACACTTCTGGCGGACCCGAGTCTGTTGATGGATTAG ATTCTTCTCTTTTCGAATGGCCGAAGGACTTGGACGTTCCAAACCTAATG ATTGTGCTCCAAGTTGACGGTAAAATCAGGAAAGAGCGAATCCGCCGACG GGGAAAACTCTTGAACTACAATCCATGGGATGATCGTCTCACCAAGGATG ATAATCTCGGAAAGCGTATCGTGAGAGCGTGGGAACGAATCTCTGGCCCT CGAGAAGCCGTTCACCTATCTGCAAATTCTTCAAAGCAAGACGTTCTGAG AGAAAGTCGAGAGATTGTAAGGGAAAATATGCTCCGTCACTTTCTACCTG GACTGTACTTTCGGCAGAATCCTCTGGGATTGTTTCGATGGATTTCGTCA TATCTTGGACAATGCCACGAAAAGACTGGACTAAGAAGCGGGCACACGAC GTGGAGTTTTCAAATCTGCGCAAACAATACAGAAAATAGGGAGGTAGCTT TGCAGAGCCACGAGATTCAGATGGTCGGTGAAGATAGTATTCTTTCATTC TCGAGCGACCTCTTCCAAGGCCAGCAAAAGTCTTGCAGAAACGCCATGGC CTCTGCTGCCTGGATTCAAGGAGAATATCCGAATGAGTACCGCTGGAGAG CAGACGGGGTAACGTGTATGGTTACAGAATCGGAGTGCAACCTAATGGGC ATATCTCCGTGCCCGAGTGTAATGATTTATGCCCATACATCGATCTGCGA ACGACAGGAGCACAATGACAAGTTTCAAGAGGAGAACGAAATGATACGCT CGTCACACCGTGAAGGCATCTCGCAGCAAAACGCGCTGCACGAACTCAAG ACCGGAAACTTTGTCTCGAGATTTGTCCCATTGCGAATGAAACTTACAAT TGGAAGCCTCGATCGTCATGAGGAACTGCGTTCGTACGAGTGGGTCCGCA AGCGCAGCGATTTGGAAAATGGATGGTCTGTCCCAGAACAAGGTATTCCC TTACCATTGTCACATGATTTTCTCAACGGTAGGACTTTGCTACCCGTTAC GCTCGCCTTTCTTGGCACGCATACTTCTGGCAAAAAAACGCTCGGAGAGC GTCTGGCAAACATTTATGAGTGGTCATTTCAACCTGAACTTGGCGACATT CTACGAGACAAGGACAAGATTGTTGCGGCTGGCCATAGAACTGGAGACGG TAAAGCAGAAAAAGATTCCTCAGGAAAGGAATGGGACGACAGAATTCACG AAGCGGAATGCGAACGGGACAGAGCGTCCACGTTTTCGCGAGTCGTGGAG ACTTGGCATGTAGGCAACACTGCATGGGCTTTGTTTCGAAAATCGTTAGC CGTATCGGAACAGAACGCCGAAGAATTCATCGATAGAGCTAGGGAGGCGA TTAAGTTCGAACTCAGCAAGTCTGTTGTCCTTCTCGTTCATTTGAGAATT GATGTGCAAACATCACTTCGCCGCCGACAGCTCGAAGAAAATTCCAAACG CATACCGATGAAAAGTGAACATGAAGAATGTGCTGAGCTCCACGAGGCTT TGGACGTGAAAGGTGTTCAGCTTCTTTCAGAATTCCGAGGTCTGAGCATT CCTGTGCTTCAAATAGACAACTGTGAAGATGGGGAGCAAGCGATAGACAA ATCTGTGCAGCAGATAGTTCACTTTGTGAACTGCAACCTATGGCGTAAGG TGAGAGTGTTACCGTAG back to top
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