Gcaud2600.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2600.t1
Unique Name	Gcaud2600.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	249

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_53_length_63756_cov_4.464180	contig	NODE_53_length_63756_cov_4.464180:44976..45722 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	159749.K0RST8
Preferred name	RSAD2
PFAMs	Fer4_12,Fer4_14,Radical_SAM
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15045
KEGG Pathway	ko05164,map05164
GOs	GO:0001503,GO:0001650,GO:0001775,GO:0001817,GO:0001819,GO:0002252,GO:0002376,GO:0002520,GO:0002521,GO:0002682,GO:0002684,GO:0002697,GO:0002699,GO:0002700,GO:0002702,GO:0002703,GO:0002705,GO:0002706,GO:0002708,GO:0002709,GO:0002711,GO:0002718,GO:0002720,GO:0002724,GO:0002726,GO:0002791,GO:0002792,GO:0002819,GO:0002821,GO:0002822,GO:0002824,GO:0002828,GO:0002830,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005743,GO:0005783,GO:0005789,GO:0005811,GO:0006950,GO:0006952,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0008150,GO:0009605,GO:0009607,GO:0009615,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010646,GO:0010647,GO:0012505,GO:0016020,GO:0019221,GO:0019866,GO:0019867,GO:0023051,GO:0023052,GO:0023056,GO:0030097,GO:0030098,GO:0030154,GO:0030217,GO:0030278,GO:0031090,GO:0031347,GO:0031349,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0034097,GO:0034121,GO:0034123,GO:0034155,GO:0034157,GO:0034163,GO:0034165,GO:0034340,GO:0035710,GO:0042110,GO:0042175,GO:0042221,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043367,GO:0043621,GO:0043900,GO:0043901,GO:0043903,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044432,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045069,GO:0045071,GO:0045087,GO:0045088,GO:0045089,GO:0045321,GO:0046631,GO:0046632,GO:0046649,GO:0048037,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048525,GO:0048534,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0048869,GO:0050708,GO:0050709,GO:0050776,GO:0050778,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051046,GO:0051048,GO:0051049,GO:0051051,GO:0051223,GO:0051224,GO:0051239,GO:0051240,GO:0051536,GO:0051539,GO:0051540,GO:0051607,GO:0051704,GO:0051707,GO:0051716,GO:0060337,GO:0065007,GO:0070013,GO:0070201,GO:0070887,GO:0071310,GO:0071345,GO:0071357,GO:0080134,GO:0090087,GO:0098542,GO:0098588,GO:0098805,GO:0098827,GO:1903530,GO:1903531,GO:1903900,GO:1903901,GO:1904950,GO:2000551,GO:2000553
Evalue	3.07e-111
EggNOG OGs	28IB0@1\|root,2QQMH@2759\|Eukaryota
Description	positive regulation of toll-like receptor 7 signaling pathway
COG category	O
BRITE	ko00000,ko00001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2600	Gcaud2600	Gracilaria caudata M_176_S67 male	gene	NODE_53_length_63756_cov_4.464180 44976..45722 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2600.t1.start1	Gcaud2600.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_53_length_63756_cov_4.464180 44976..44978 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2600.t1.CDS1	Gcaud2600.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_53_length_63756_cov_4.464180 44976..45722 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2600.t1.exon1	Gcaud2600.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_53_length_63756_cov_4.464180 44976..45722 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2600.t1.stop1	Gcaud2600.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_53_length_63756_cov_4.464180 45720..45722 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2600.t1	Gcaud2600.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_53_length_63756_cov_4.464180 44976..45722 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_53_length_63756_cov_4.464180:44976..45722+
coding sequence from alignment at NODE_53_length_63756_cov_4.464180:44976..45722+

mRNA sequence

>Gcaud2600.t1 ID=Gcaud2600.t1|Name=Gcaud2600.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=249bp
MLRKAGTEKINFAGGEPFLQHELLGELCKTSHELGMAVSIISNGSLITQK
WMQEYGSYVDILGVSVDSFDPKTNAAIGRGGDANNKHVERILRVRDQCEK
HSIKFKMNTVVCSLNWEEDMNAHVRKLDPMRWKVFQVLILKDENSGLPGE
LRDARPLVVSGRQYQSFVFRHSDFKQLVAEPNNVMQNSYLLLDEELRFLD
CSSGGKVPSASILDVGVYEAIAHSGFDQNMFDERGGVYGWKRARAEQN*

spliced messenger RNA

>Gcaud2600.t1 ID=Gcaud2600.t1|Name=Gcaud2600.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=747bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:44976..45722+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTACGAAAGGCTGGAACAGAGAAGATTAACTTTGCAGGCGGAGAGCC
GTTTCTGCAACACGAACTGTTGGGTGAACTGTGCAAGACGAGCCATGAGC
TGGGGATGGCTGTTTCCATAATCAGCAATGGATCTCTCATCACTCAGAAG
TGGATGCAGGAATACGGGTCTTATGTGGATATCTTAGGGGTGTCTGTAGA
TTCGTTTGACCCGAAGACAAACGCCGCAATTGGACGAGGCGGTGACGCCA
ACAACAAGCATGTTGAACGCATTCTACGAGTGAGGGACCAATGTGAGAAG
CACAGCATCAAGTTCAAAATGAATACGGTTGTTTGTAGTCTTAACTGGGA
AGAAGACATGAACGCGCATGTGCGAAAGCTCGATCCCATGAGATGGAAAG
TGTTCCAAGTTCTCATTCTCAAAGACGAAAACTCAGGGCTTCCCGGAGAG
CTTCGTGATGCCCGCCCCCTTGTTGTGTCGGGTCGTCAGTATCAGAGCTT
TGTGTTTCGTCATTCAGATTTCAAACAGTTAGTTGCGGAACCTAACAATG
TGATGCAGAACTCTTACCTTCTATTGGACGAAGAACTCCGCTTCCTAGAT
TGCTCTAGTGGAGGAAAGGTTCCCAGTGCAAGCATTTTGGATGTTGGTGT
ATATGAAGCTATTGCACACAGTGGTTTTGATCAAAACATGTTTGACGAGC
GAGGCGGAGTGTACGGGTGGAAGCGAGCAAGAGCTGAGCAAAACTAG

protein sequence of Gcaud2600.t1

>Gcaud2600.t1 ID=Gcaud2600.t1|Name=Gcaud2600.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=249bp
MLRKAGTEKINFAGGEPFLQHELLGELCKTSHELGMAVSIISNGSLITQK
WMQEYGSYVDILGVSVDSFDPKTNAAIGRGGDANNKHVERILRVRDQCEK
HSIKFKMNTVVCSLNWEEDMNAHVRKLDPMRWKVFQVLILKDENSGLPGE
LRDARPLVVSGRQYQSFVFRHSDFKQLVAEPNNVMQNSYLLLDEELRFLD
CSSGGKVPSASILDVGVYEAIAHSGFDQNMFDERGGVYGWKRARAEQN*

mRNA from alignment at NODE_53_length_63756_cov_4.464180:44976..45722+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2600.t1 ID=Gcaud2600.t1|Name=Gcaud2600.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=747bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:44976..45722+ (Gracilaria caudata M_176_S67 male)
ATGCTACGAAAGGCTGGAACAGAGAAGATTAACTTTGCAGGCGGAGAGCC
GTTTCTGCAACACGAACTGTTGGGTGAACTGTGCAAGACGAGCCATGAGC
TGGGGATGGCTGTTTCCATAATCAGCAATGGATCTCTCATCACTCAGAAG
TGGATGCAGGAATACGGGTCTTATGTGGATATCTTAGGGGTGTCTGTAGA
TTCGTTTGACCCGAAGACAAACGCCGCAATTGGACGAGGCGGTGACGCCA
ACAACAAGCATGTTGAACGCATTCTACGAGTGAGGGACCAATGTGAGAAG
CACAGCATCAAGTTCAAAATGAATACGGTTGTTTGTAGTCTTAACTGGGA
AGAAGACATGAACGCGCATGTGCGAAAGCTCGATCCCATGAGATGGAAAG
TGTTCCAAGTTCTCATTCTCAAAGACGAAAACTCAGGGCTTCCCGGAGAG
CTTCGTGATGCCCGCCCCCTTGTTGTGTCGGGTCGTCAGTATCAGAGCTT
TGTGTTTCGTCATTCAGATTTCAAACAGTTAGTTGCGGAACCTAACAATG
TGATGCAGAACTCTTACCTTCTATTGGACGAAGAACTCCGCTTCCTAGAT
TGCTCTAGTGGAGGAAAGGTTCCCAGTGCAAGCATTTTGGATGTTGGTGT
ATATGAAGCTATTGCACACAGTGGTTTTGATCAAAACATGTTTGACGAGC
GAGGCGGAGTGTACGGGTGGAAGCGAGCAAGAGCTGAGCAAAACTAG

Coding sequence (CDS) from alignment at NODE_53_length_63756_cov_4.464180:44976..45722+

>Gcaud2600.t1 ID=Gcaud2600.t1|Name=Gcaud2600.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=747bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:44976..45722+ (Gracilaria caudata M_176_S67 male)
ATGCTACGAAAGGCTGGAACAGAGAAGATTAACTTTGCAGGCGGAGAGCC
GTTTCTGCAACACGAACTGTTGGGTGAACTGTGCAAGACGAGCCATGAGC
TGGGGATGGCTGTTTCCATAATCAGCAATGGATCTCTCATCACTCAGAAG
TGGATGCAGGAATACGGGTCTTATGTGGATATCTTAGGGGTGTCTGTAGA
TTCGTTTGACCCGAAGACAAACGCCGCAATTGGACGAGGCGGTGACGCCA
ACAACAAGCATGTTGAACGCATTCTACGAGTGAGGGACCAATGTGAGAAG
CACAGCATCAAGTTCAAAATGAATACGGTTGTTTGTAGTCTTAACTGGGA
AGAAGACATGAACGCGCATGTGCGAAAGCTCGATCCCATGAGATGGAAAG
TGTTCCAAGTTCTCATTCTCAAAGACGAAAACTCAGGGCTTCCCGGAGAG
CTTCGTGATGCCCGCCCCCTTGTTGTGTCGGGTCGTCAGTATCAGAGCTT
TGTGTTTCGTCATTCAGATTTCAAACAGTTAGTTGCGGAACCTAACAATG
TGATGCAGAACTCTTACCTTCTATTGGACGAAGAACTCCGCTTCCTAGAT
TGCTCTAGTGGAGGAAAGGTTCCCAGTGCAAGCATTTTGGATGTTGGTGT
ATATGAAGCTATTGCACACAGTGGTTTTGATCAAAACATGTTTGACGAGC
GAGGCGGAGTGTACGGGTGGAAGCGAGCAAGAGCTGAGCAAAACTAG