Gcaud26.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud26.t1
Unique NameGcaud26.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length359
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2048_length_7066_cov_4.792115contigNODE_2048_length_7066_cov_4.792115:2942..4018 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud26Gcaud26Gracilaria caudata M_176_S67 malegeneNODE_2048_length_7066_cov_4.792115 2942..4018 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud26.t1.stop1Gcaud26.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2048_length_7066_cov_4.792115 2942..2944 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud26.t1.CDS1Gcaud26.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2048_length_7066_cov_4.792115 2942..4018 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud26.t1.exon1Gcaud26.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2048_length_7066_cov_4.792115 2942..4018 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud26.t1.start1Gcaud26.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2048_length_7066_cov_4.792115 4016..4018 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud26.t1Gcaud26.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2048_length_7066_cov_4.792115 2942..4018 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud26.t1 ID=Gcaud26.t1|Name=Gcaud26.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=359bp
MPIMTSFTSSSDVYREVDVPDNVQFPVKRVLVPLHAKHLALKSVRETEEP
VRNEEMHKLTNAPGNVAKLPNYEALRKRTWRDKGQNRIKENANQRRRYKI
SRKSESPESKEARLQKRRHWYAKKKDSKKRKSSESLTHNSELNDTISSSS
DASIDSGSHDPSYTPSASFNSISQPSTESFSSATDDLCTSGEPGTQSTLS
SEDFLYEIRVQTHSVSVYHHLLIPVAEILDSDVKVLHVKDGEKSPLVPET
GHEISKISTEAGIAPSSPVDTGQVHITKSTTQQFQVSRIGEEGSEPNSET
GVKVVEIGRADEVLVDPCNPAPQEVTEAQQIMLDIFGPEGSEDELDPSVH
TRTTDRHV*
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spliced messenger RNA

>Gcaud26.t1 ID=Gcaud26.t1|Name=Gcaud26.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1077bp|location=Sequence derived from alignment at NODE_2048_length_7066_cov_4.792115:2942..4018- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGATAATGACATCATTTACGTCGTCTTCTGATGTTTACCGAGAAGT
AGACGTTCCAGATAATGTGCAATTCCCTGTCAAGAGGGTTTTGGTCCCTC
TGCATGCTAAACATTTGGCGCTGAAAAGTGTGAGAGAAACCGAAGAACCC
GTAAGAAACGAAGAGATGCACAAGCTGACCAACGCACCGGGTAACGTTGC
CAAATTACCGAATTACGAAGCGTTGCGGAAGAGAACATGGCGTGACAAAG
GCCAGAACCGAATTAAGGAAAACGCAAATCAGCGACGTAGGTACAAGATT
AGTAGAAAGTCTGAGTCACCGGAGTCCAAGGAAGCCCGTTTGCAGAAGCG
GCGTCATTGGTATGCGAAGAAAAAAGACTCCAAAAAGCGCAAGTCCAGTG
AATCATTGACCCACAATTCAGAGCTCAACGACACTATTTCTAGTTCTTCA
GATGCTTCTATCGATAGTGGTTCACATGATCCTAGTTACACACCAAGTGC
CTCATTTAATTCAATCTCTCAGCCAAGCACCGAAAGTTTCAGTAGTGCCA
CCGACGATTTGTGTACTTCTGGAGAGCCTGGGACGCAAAGTACTCTTTCA
AGTGAGGATTTCTTGTACGAGATACGCGTTCAAACGCACTCTGTAAGTGT
TTACCATCACTTGTTGATTCCTGTTGCTGAGATCCTAGACTCAGATGTGA
AGGTTTTACATGTGAAGGACGGCGAGAAGTCTCCGTTGGTACCTGAGACC
GGCCATGAAATTTCAAAGATCTCAACCGAAGCGGGAATCGCACCATCTTC
ACCAGTTGATACTGGTCAGGTGCACATCACGAAGAGTACCACGCAACAAT
TTCAAGTCTCCAGAATCGGTGAAGAAGGATCGGAGCCTAATTCAGAGACA
GGAGTAAAAGTTGTAGAGATTGGCCGGGCAGATGAAGTACTCGTAGATCC
GTGCAATCCCGCACCACAAGAAGTTACTGAAGCGCAGCAGATTATGCTGG
ACATCTTTGGACCCGAGGGATCTGAAGATGAGCTGGACCCTTCCGTGCAT
ACAAGAACTACTGATCGGCACGTTTGA
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protein sequence of Gcaud26.t1

>Gcaud26.t1 ID=Gcaud26.t1|Name=Gcaud26.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=359bp
MPIMTSFTSSSDVYREVDVPDNVQFPVKRVLVPLHAKHLALKSVRETEEP
VRNEEMHKLTNAPGNVAKLPNYEALRKRTWRDKGQNRIKENANQRRRYKI
SRKSESPESKEARLQKRRHWYAKKKDSKKRKSSESLTHNSELNDTISSSS
DASIDSGSHDPSYTPSASFNSISQPSTESFSSATDDLCTSGEPGTQSTLS
SEDFLYEIRVQTHSVSVYHHLLIPVAEILDSDVKVLHVKDGEKSPLVPET
GHEISKISTEAGIAPSSPVDTGQVHITKSTTQQFQVSRIGEEGSEPNSET
GVKVVEIGRADEVLVDPCNPAPQEVTEAQQIMLDIFGPEGSEDELDPSVH
TRTTDRHV*
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mRNA from alignment at NODE_2048_length_7066_cov_4.792115:2942..4018-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud26.t1 ID=Gcaud26.t1|Name=Gcaud26.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1077bp|location=Sequence derived from alignment at NODE_2048_length_7066_cov_4.792115:2942..4018- (Gracilaria caudata M_176_S67 male)
ATGCCGATAATGACATCATTTACGTCGTCTTCTGATGTTTACCGAGAAGT
AGACGTTCCAGATAATGTGCAATTCCCTGTCAAGAGGGTTTTGGTCCCTC
TGCATGCTAAACATTTGGCGCTGAAAAGTGTGAGAGAAACCGAAGAACCC
GTAAGAAACGAAGAGATGCACAAGCTGACCAACGCACCGGGTAACGTTGC
CAAATTACCGAATTACGAAGCGTTGCGGAAGAGAACATGGCGTGACAAAG
GCCAGAACCGAATTAAGGAAAACGCAAATCAGCGACGTAGGTACAAGATT
AGTAGAAAGTCTGAGTCACCGGAGTCCAAGGAAGCCCGTTTGCAGAAGCG
GCGTCATTGGTATGCGAAGAAAAAAGACTCCAAAAAGCGCAAGTCCAGTG
AATCATTGACCCACAATTCAGAGCTCAACGACACTATTTCTAGTTCTTCA
GATGCTTCTATCGATAGTGGTTCACATGATCCTAGTTACACACCAAGTGC
CTCATTTAATTCAATCTCTCAGCCAAGCACCGAAAGTTTCAGTAGTGCCA
CCGACGATTTGTGTACTTCTGGAGAGCCTGGGACGCAAAGTACTCTTTCA
AGTGAGGATTTCTTGTACGAGATACGCGTTCAAACGCACTCTGTAAGTGT
TTACCATCACTTGTTGATTCCTGTTGCTGAGATCCTAGACTCAGATGTGA
AGGTTTTACATGTGAAGGACGGCGAGAAGTCTCCGTTGGTACCTGAGACC
GGCCATGAAATTTCAAAGATCTCAACCGAAGCGGGAATCGCACCATCTTC
ACCAGTTGATACTGGTCAGGTGCACATCACGAAGAGTACCACGCAACAAT
TTCAAGTCTCCAGAATCGGTGAAGAAGGATCGGAGCCTAATTCAGAGACA
GGAGTAAAAGTTGTAGAGATTGGCCGGGCAGATGAAGTACTCGTAGATCC
GTGCAATCCCGCACCACAAGAAGTTACTGAAGCGCAGCAGATTATGCTGG
ACATCTTTGGACCCGAGGGATCTGAAGATGAGCTGGACCCTTCCGTGCAT
ACAAGAACTACTGATCGGCACGTTTGA
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Coding sequence (CDS) from alignment at NODE_2048_length_7066_cov_4.792115:2942..4018-

>Gcaud26.t1 ID=Gcaud26.t1|Name=Gcaud26.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1077bp|location=Sequence derived from alignment at NODE_2048_length_7066_cov_4.792115:2942..4018- (Gracilaria caudata M_176_S67 male)
ATGCCGATAATGACATCATTTACGTCGTCTTCTGATGTTTACCGAGAAGT
AGACGTTCCAGATAATGTGCAATTCCCTGTCAAGAGGGTTTTGGTCCCTC
TGCATGCTAAACATTTGGCGCTGAAAAGTGTGAGAGAAACCGAAGAACCC
GTAAGAAACGAAGAGATGCACAAGCTGACCAACGCACCGGGTAACGTTGC
CAAATTACCGAATTACGAAGCGTTGCGGAAGAGAACATGGCGTGACAAAG
GCCAGAACCGAATTAAGGAAAACGCAAATCAGCGACGTAGGTACAAGATT
AGTAGAAAGTCTGAGTCACCGGAGTCCAAGGAAGCCCGTTTGCAGAAGCG
GCGTCATTGGTATGCGAAGAAAAAAGACTCCAAAAAGCGCAAGTCCAGTG
AATCATTGACCCACAATTCAGAGCTCAACGACACTATTTCTAGTTCTTCA
GATGCTTCTATCGATAGTGGTTCACATGATCCTAGTTACACACCAAGTGC
CTCATTTAATTCAATCTCTCAGCCAAGCACCGAAAGTTTCAGTAGTGCCA
CCGACGATTTGTGTACTTCTGGAGAGCCTGGGACGCAAAGTACTCTTTCA
AGTGAGGATTTCTTGTACGAGATACGCGTTCAAACGCACTCTGTAAGTGT
TTACCATCACTTGTTGATTCCTGTTGCTGAGATCCTAGACTCAGATGTGA
AGGTTTTACATGTGAAGGACGGCGAGAAGTCTCCGTTGGTACCTGAGACC
GGCCATGAAATTTCAAAGATCTCAACCGAAGCGGGAATCGCACCATCTTC
ACCAGTTGATACTGGTCAGGTGCACATCACGAAGAGTACCACGCAACAAT
TTCAAGTCTCCAGAATCGGTGAAGAAGGATCGGAGCCTAATTCAGAGACA
GGAGTAAAAGTTGTAGAGATTGGCCGGGCAGATGAAGTACTCGTAGATCC
GTGCAATCCCGCACCACAAGAAGTTACTGAAGCGCAGCAGATTATGCTGG
ACATCTTTGGACCCGAGGGATCTGAAGATGAGCTGGACCCTTCCGTGCAT
ACAAGAACTACTGATCGGCACGTTTGA
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