Gcaud2598.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2598.t1
Unique Name	Gcaud2598.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	683

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_53_length_63756_cov_4.464180	contig	NODE_53_length_63756_cov_4.464180:38752..40800 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2598	Gcaud2598	Gracilaria caudata M_176_S67 male	gene	NODE_53_length_63756_cov_4.464180 38752..40800 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2598.t1.stop1	Gcaud2598.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_53_length_63756_cov_4.464180 38752..38754 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2598.t1.CDS1	Gcaud2598.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_53_length_63756_cov_4.464180 38752..40800 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2598.t1.exon1	Gcaud2598.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_53_length_63756_cov_4.464180 38752..40800 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2598.t1.start1	Gcaud2598.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_53_length_63756_cov_4.464180 40798..40800 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2598.t1	Gcaud2598.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_53_length_63756_cov_4.464180 38752..40800 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_53_length_63756_cov_4.464180:38752..40800-
coding sequence from alignment at NODE_53_length_63756_cov_4.464180:38752..40800-

mRNA sequence

>Gcaud2598.t1 ID=Gcaud2598.t1|Name=Gcaud2598.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=683bp
MSASPGDQLISAARNGDMSCALRLLEQNVDVDYQGAKRFTALLWAARCGH
VHIVNLLLQRKANVHHVNDLNRTALSQAAGFGQQAVVQALLQAGANVNHA
DRDGYTALRNAACYGHLSVTNMLIEAGADVNCVDKRGLSALITAARKQRP
HVLRALIDGGAQLEISDFCGRTALFTHHLACVDALCQAHANVHHVDHDGN
TPLSYAVRNADSSVVKRLLDAGSNPYHLNSYGATVLMSAAACGNEDTVDV
LIAANVNVNHANQQQSTALMWAAHHTQTSIVKTLLNADAHVNVIDKQGNT
ALHYVLDRCIIDRCHEVASVLVEHGADLLIVNCNNDTPLCLLPSTCNLRR
TLLEHFDDDVDKMWHRFMTGVQHTVTAEQLLGVLCGGNIRSLCSLLAAHN
LLLLLVRTSQFTQRELHCLKGSPGYLLQNVYLPVSKLRLTKEEHMVASVV
TRYAEAFGFIPECSAVWVNHAIEVRSEIRENRQLLQMVMEKVMDDICSLH
QRVYRLEEWTQHTADEFQRLAQNNEKMVNDMKQLSHNLNDLHRNLRQQQR
RLIYTAIARTVLSIVPVFGKALCDATYAGIELFCGLTTEDMVEIGTDVVK
GAVSLGIALDMSDPRYVRKLTSAAFLPQLEPIARERLEFVVAQSDFKSVE
ALHRELQEVEPMAMERLSQTRDAAEHQGANVS*

spliced messenger RNA

>Gcaud2598.t1 ID=Gcaud2598.t1|Name=Gcaud2598.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2049bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:38752..40800- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGCTTCGCCAGGGGACCAGCTTATCTCGGCCGCTCGCAATGGCGA
CATGTCTTGCGCGTTGCGTTTACTTGAGCAAAATGTTGACGTCGATTATC
AGGGCGCGAAGCGATTTACCGCTCTTCTTTGGGCTGCTCGTTGTGGACAT
GTGCACATTGTCAACTTGTTGCTGCAGCGAAAGGCAAATGTGCATCACGT
CAATGACCTCAATCGAACTGCTTTGAGTCAGGCAGCCGGTTTTGGTCAAC
AAGCAGTTGTCCAAGCTTTGTTACAAGCCGGTGCTAATGTCAATCATGCC
GATCGTGATGGATATACCGCGTTGAGAAACGCCGCTTGTTATGGACATCT
CTCTGTCACCAATATGTTGATTGAGGCCGGTGCCGATGTTAATTGTGTTG
ATAAGCGTGGACTCTCAGCTCTTATCACTGCTGCTCGGAAACAGCGTCCT
CATGTGCTTCGTGCCTTGATTGACGGCGGGGCTCAACTTGAGATTTCCGA
TTTTTGTGGACGTACCGCGCTTTTCACACATCATCTCGCTTGCGTCGATG
CCCTATGCCAGGCGCACGCTAACGTTCATCATGTGGATCATGATGGTAAC
ACCCCACTTAGCTATGCTGTGCGCAATGCAGATTCCTCAGTCGTCAAACG
CTTACTCGATGCTGGCTCTAATCCATACCATCTTAATTCGTATGGAGCAA
CAGTGTTAATGTCGGCTGCTGCTTGTGGAAATGAGGACACCGTCGATGTA
CTTATAGCGGCGAACGTAAATGTGAACCATGCTAATCAGCAGCAAAGCAC
TGCTCTCATGTGGGCTGCACATCACACGCAAACATCCATCGTGAAAACGT
TGTTGAACGCCGATGCGCACGTTAATGTTATTGATAAACAGGGTAATACC
GCTCTTCACTACGTACTTGATCGTTGCATCATTGACCGTTGCCACGAAGT
TGCAAGCGTTCTGGTCGAACATGGTGCAGATTTGCTTATCGTGAATTGCA
ACAACGATACTCCGCTTTGTCTCTTGCCGAGTACCTGCAACTTGCGCCGA
ACGTTGCTTGAACATTTTGATGACGATGTTGATAAGATGTGGCATCGATT
TATGACGGGCGTGCAGCATACCGTTACAGCTGAACAGCTGCTCGGCGTGT
TGTGCGGTGGTAACATACGCTCACTGTGTTCGTTATTGGCGGCTCACAAC
TTACTCCTCCTTCTTGTTCGTACAAGTCAGTTTACACAACGAGAACTGCA
CTGTTTAAAGGGATCACCTGGTTACTTGTTGCAAAACGTTTATCTCCCCG
TCTCCAAATTGAGGCTCACTAAGGAGGAGCACATGGTAGCTTCAGTTGTA
ACAAGATATGCCGAGGCATTTGGGTTCATCCCTGAATGCTCTGCAGTGTG
GGTTAACCATGCGATAGAGGTGCGATCAGAGATTCGCGAGAACCGACAGC
TGCTCCAGATGGTAATGGAGAAGGTTATGGATGACATCTGCTCCCTGCAT
CAACGGGTGTACAGGCTAGAGGAATGGACACAACACACCGCCGACGAGTT
CCAAAGGCTGGCGCAGAATAATGAGAAGATGGTGAACGATATGAAGCAGC
TGTCTCACAATCTAAATGATCTGCACAGAAATCTCCGGCAACAACAGCGA
CGGCTCATTTACACGGCCATAGCGCGCACTGTGCTTTCCATCGTTCCCGT
GTTTGGCAAGGCGTTGTGCGATGCCACGTACGCAGGCATAGAGCTGTTCT
GCGGACTGACGACGGAGGACATGGTTGAGATTGGCACCGATGTTGTAAAA
GGAGCCGTGTCTCTTGGAATTGCTTTGGACATGAGCGATCCAAGATACGT
TCGCAAGCTTACCAGCGCGGCCTTCCTGCCTCAACTGGAACCCATCGCCA
GGGAGCGCTTAGAGTTCGTCGTGGCTCAAAGCGACTTCAAATCTGTGGAG
GCGCTGCACCGCGAATTGCAGGAGGTGGAGCCGATGGCGATGGAGCGTTT
GAGTCAAACTCGCGATGCAGCCGAGCATCAAGGCGCGAACGTTTCATAA

protein sequence of Gcaud2598.t1

>Gcaud2598.t1 ID=Gcaud2598.t1|Name=Gcaud2598.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=683bp
MSASPGDQLISAARNGDMSCALRLLEQNVDVDYQGAKRFTALLWAARCGH
VHIVNLLLQRKANVHHVNDLNRTALSQAAGFGQQAVVQALLQAGANVNHA
DRDGYTALRNAACYGHLSVTNMLIEAGADVNCVDKRGLSALITAARKQRP
HVLRALIDGGAQLEISDFCGRTALFTHHLACVDALCQAHANVHHVDHDGN
TPLSYAVRNADSSVVKRLLDAGSNPYHLNSYGATVLMSAAACGNEDTVDV
LIAANVNVNHANQQQSTALMWAAHHTQTSIVKTLLNADAHVNVIDKQGNT
ALHYVLDRCIIDRCHEVASVLVEHGADLLIVNCNNDTPLCLLPSTCNLRR
TLLEHFDDDVDKMWHRFMTGVQHTVTAEQLLGVLCGGNIRSLCSLLAAHN
LLLLLVRTSQFTQRELHCLKGSPGYLLQNVYLPVSKLRLTKEEHMVASVV
TRYAEAFGFIPECSAVWVNHAIEVRSEIRENRQLLQMVMEKVMDDICSLH
QRVYRLEEWTQHTADEFQRLAQNNEKMVNDMKQLSHNLNDLHRNLRQQQR
RLIYTAIARTVLSIVPVFGKALCDATYAGIELFCGLTTEDMVEIGTDVVK
GAVSLGIALDMSDPRYVRKLTSAAFLPQLEPIARERLEFVVAQSDFKSVE
ALHRELQEVEPMAMERLSQTRDAAEHQGANVS*

mRNA from alignment at NODE_53_length_63756_cov_4.464180:38752..40800-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2598.t1 ID=Gcaud2598.t1|Name=Gcaud2598.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2049bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:38752..40800- (Gracilaria caudata M_176_S67 male)
ATGTCCGCTTCGCCAGGGGACCAGCTTATCTCGGCCGCTCGCAATGGCGA
CATGTCTTGCGCGTTGCGTTTACTTGAGCAAAATGTTGACGTCGATTATC
AGGGCGCGAAGCGATTTACCGCTCTTCTTTGGGCTGCTCGTTGTGGACAT
GTGCACATTGTCAACTTGTTGCTGCAGCGAAAGGCAAATGTGCATCACGT
CAATGACCTCAATCGAACTGCTTTGAGTCAGGCAGCCGGTTTTGGTCAAC
AAGCAGTTGTCCAAGCTTTGTTACAAGCCGGTGCTAATGTCAATCATGCC
GATCGTGATGGATATACCGCGTTGAGAAACGCCGCTTGTTATGGACATCT
CTCTGTCACCAATATGTTGATTGAGGCCGGTGCCGATGTTAATTGTGTTG
ATAAGCGTGGACTCTCAGCTCTTATCACTGCTGCTCGGAAACAGCGTCCT
CATGTGCTTCGTGCCTTGATTGACGGCGGGGCTCAACTTGAGATTTCCGA
TTTTTGTGGACGTACCGCGCTTTTCACACATCATCTCGCTTGCGTCGATG
CCCTATGCCAGGCGCACGCTAACGTTCATCATGTGGATCATGATGGTAAC
ACCCCACTTAGCTATGCTGTGCGCAATGCAGATTCCTCAGTCGTCAAACG
CTTACTCGATGCTGGCTCTAATCCATACCATCTTAATTCGTATGGAGCAA
CAGTGTTAATGTCGGCTGCTGCTTGTGGAAATGAGGACACCGTCGATGTA
CTTATAGCGGCGAACGTAAATGTGAACCATGCTAATCAGCAGCAAAGCAC
TGCTCTCATGTGGGCTGCACATCACACGCAAACATCCATCGTGAAAACGT
TGTTGAACGCCGATGCGCACGTTAATGTTATTGATAAACAGGGTAATACC
GCTCTTCACTACGTACTTGATCGTTGCATCATTGACCGTTGCCACGAAGT
TGCAAGCGTTCTGGTCGAACATGGTGCAGATTTGCTTATCGTGAATTGCA
ACAACGATACTCCGCTTTGTCTCTTGCCGAGTACCTGCAACTTGCGCCGA
ACGTTGCTTGAACATTTTGATGACGATGTTGATAAGATGTGGCATCGATT
TATGACGGGCGTGCAGCATACCGTTACAGCTGAACAGCTGCTCGGCGTGT
TGTGCGGTGGTAACATACGCTCACTGTGTTCGTTATTGGCGGCTCACAAC
TTACTCCTCCTTCTTGTTCGTACAAGTCAGTTTACACAACGAGAACTGCA
CTGTTTAAAGGGATCACCTGGTTACTTGTTGCAAAACGTTTATCTCCCCG
TCTCCAAATTGAGGCTCACTAAGGAGGAGCACATGGTAGCTTCAGTTGTA
ACAAGATATGCCGAGGCATTTGGGTTCATCCCTGAATGCTCTGCAGTGTG
GGTTAACCATGCGATAGAGGTGCGATCAGAGATTCGCGAGAACCGACAGC
TGCTCCAGATGGTAATGGAGAAGGTTATGGATGACATCTGCTCCCTGCAT
CAACGGGTGTACAGGCTAGAGGAATGGACACAACACACCGCCGACGAGTT
CCAAAGGCTGGCGCAGAATAATGAGAAGATGGTGAACGATATGAAGCAGC
TGTCTCACAATCTAAATGATCTGCACAGAAATCTCCGGCAACAACAGCGA
CGGCTCATTTACACGGCCATAGCGCGCACTGTGCTTTCCATCGTTCCCGT
GTTTGGCAAGGCGTTGTGCGATGCCACGTACGCAGGCATAGAGCTGTTCT
GCGGACTGACGACGGAGGACATGGTTGAGATTGGCACCGATGTTGTAAAA
GGAGCCGTGTCTCTTGGAATTGCTTTGGACATGAGCGATCCAAGATACGT
TCGCAAGCTTACCAGCGCGGCCTTCCTGCCTCAACTGGAACCCATCGCCA
GGGAGCGCTTAGAGTTCGTCGTGGCTCAAAGCGACTTCAAATCTGTGGAG
GCGCTGCACCGCGAATTGCAGGAGGTGGAGCCGATGGCGATGGAGCGTTT
GAGTCAAACTCGCGATGCAGCCGAGCATCAAGGCGCGAACGTTTCATAA

Coding sequence (CDS) from alignment at NODE_53_length_63756_cov_4.464180:38752..40800-

>Gcaud2598.t1 ID=Gcaud2598.t1|Name=Gcaud2598.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2049bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:38752..40800- (Gracilaria caudata M_176_S67 male)
ATGTCCGCTTCGCCAGGGGACCAGCTTATCTCGGCCGCTCGCAATGGCGA
CATGTCTTGCGCGTTGCGTTTACTTGAGCAAAATGTTGACGTCGATTATC
AGGGCGCGAAGCGATTTACCGCTCTTCTTTGGGCTGCTCGTTGTGGACAT
GTGCACATTGTCAACTTGTTGCTGCAGCGAAAGGCAAATGTGCATCACGT
CAATGACCTCAATCGAACTGCTTTGAGTCAGGCAGCCGGTTTTGGTCAAC
AAGCAGTTGTCCAAGCTTTGTTACAAGCCGGTGCTAATGTCAATCATGCC
GATCGTGATGGATATACCGCGTTGAGAAACGCCGCTTGTTATGGACATCT
CTCTGTCACCAATATGTTGATTGAGGCCGGTGCCGATGTTAATTGTGTTG
ATAAGCGTGGACTCTCAGCTCTTATCACTGCTGCTCGGAAACAGCGTCCT
CATGTGCTTCGTGCCTTGATTGACGGCGGGGCTCAACTTGAGATTTCCGA
TTTTTGTGGACGTACCGCGCTTTTCACACATCATCTCGCTTGCGTCGATG
CCCTATGCCAGGCGCACGCTAACGTTCATCATGTGGATCATGATGGTAAC
ACCCCACTTAGCTATGCTGTGCGCAATGCAGATTCCTCAGTCGTCAAACG
CTTACTCGATGCTGGCTCTAATCCATACCATCTTAATTCGTATGGAGCAA
CAGTGTTAATGTCGGCTGCTGCTTGTGGAAATGAGGACACCGTCGATGTA
CTTATAGCGGCGAACGTAAATGTGAACCATGCTAATCAGCAGCAAAGCAC
TGCTCTCATGTGGGCTGCACATCACACGCAAACATCCATCGTGAAAACGT
TGTTGAACGCCGATGCGCACGTTAATGTTATTGATAAACAGGGTAATACC
GCTCTTCACTACGTACTTGATCGTTGCATCATTGACCGTTGCCACGAAGT
TGCAAGCGTTCTGGTCGAACATGGTGCAGATTTGCTTATCGTGAATTGCA
ACAACGATACTCCGCTTTGTCTCTTGCCGAGTACCTGCAACTTGCGCCGA
ACGTTGCTTGAACATTTTGATGACGATGTTGATAAGATGTGGCATCGATT
TATGACGGGCGTGCAGCATACCGTTACAGCTGAACAGCTGCTCGGCGTGT
TGTGCGGTGGTAACATACGCTCACTGTGTTCGTTATTGGCGGCTCACAAC
TTACTCCTCCTTCTTGTTCGTACAAGTCAGTTTACACAACGAGAACTGCA
CTGTTTAAAGGGATCACCTGGTTACTTGTTGCAAAACGTTTATCTCCCCG
TCTCCAAATTGAGGCTCACTAAGGAGGAGCACATGGTAGCTTCAGTTGTA
ACAAGATATGCCGAGGCATTTGGGTTCATCCCTGAATGCTCTGCAGTGTG
GGTTAACCATGCGATAGAGGTGCGATCAGAGATTCGCGAGAACCGACAGC
TGCTCCAGATGGTAATGGAGAAGGTTATGGATGACATCTGCTCCCTGCAT
CAACGGGTGTACAGGCTAGAGGAATGGACACAACACACCGCCGACGAGTT
CCAAAGGCTGGCGCAGAATAATGAGAAGATGGTGAACGATATGAAGCAGC
TGTCTCACAATCTAAATGATCTGCACAGAAATCTCCGGCAACAACAGCGA
CGGCTCATTTACACGGCCATAGCGCGCACTGTGCTTTCCATCGTTCCCGT
GTTTGGCAAGGCGTTGTGCGATGCCACGTACGCAGGCATAGAGCTGTTCT
GCGGACTGACGACGGAGGACATGGTTGAGATTGGCACCGATGTTGTAAAA
GGAGCCGTGTCTCTTGGAATTGCTTTGGACATGAGCGATCCAAGATACGT
TCGCAAGCTTACCAGCGCGGCCTTCCTGCCTCAACTGGAACCCATCGCCA
GGGAGCGCTTAGAGTTCGTCGTGGCTCAAAGCGACTTCAAATCTGTGGAG
GCGCTGCACCGCGAATTGCAGGAGGTGGAGCCGATGGCGATGGAGCGTTT
GAGTCAAACTCGCGATGCAGCCGAGCATCAAGGCGCGAACGTTTCATAA