Gcaud2597.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2597.t1
Unique Name	Gcaud2597.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	328

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_53_length_63756_cov_4.464180	contig	NODE_53_length_63756_cov_4.464180:37436..38419 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D7G4R6
PFAMs	Form_Nir_trans
Max annot lvl	2759\|Eukaryota
Evalue	3.39e-70
EggNOG OGs	COG2116@1\|root,2QUGF@2759\|Eukaryota
Description	Formate/nitrite transporter
COG category	P

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2597	Gcaud2597	Gracilaria caudata M_176_S67 male	gene	NODE_53_length_63756_cov_4.464180 37436..38419 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2597.t1.stop1	Gcaud2597.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_53_length_63756_cov_4.464180 37436..37438 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2597.t1.CDS1	Gcaud2597.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_53_length_63756_cov_4.464180 37436..38419 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2597.t1.exon1	Gcaud2597.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_53_length_63756_cov_4.464180 37436..38419 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2597.t1.start1	Gcaud2597.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_53_length_63756_cov_4.464180 38417..38419 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2597.t1	Gcaud2597.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_53_length_63756_cov_4.464180 37436..38419 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_53_length_63756_cov_4.464180:37436..38419-
coding sequence from alignment at NODE_53_length_63756_cov_4.464180:37436..38419-

mRNA sequence

>Gcaud2597.t1 ID=Gcaud2597.t1|Name=Gcaud2597.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=328bp
MFAFVPTATRCAAPCRASAAVSRAQKSSFFASVPQRSFLPNRNSLPSTIP
TKSLANKPTIRAPVTAVQKSPAETFEAAVTLGSSKASLPSWKVTLLAILA
GAYIALGALLALCVGGAAPAMKAANPGLQKLLFGAFGLPGGLLLVCVAGG
ELFTGNTALLTCAFMQKRAGAGGVLRNWIWSYIGNVLGCALVTWLAVVSG
CVGGAGGAAAAAIASAKVGMPFMKAFLKGIVCNWLVCLAVYTQNGANDLM
GKFIAIWLPICAFVAMGFEHCVANMFLIPFGIAMGAEVSVKQYLMANLLP
VSLGNLVAGVVFVGLAYSLAFGKKVTA*

spliced messenger RNA

>Gcaud2597.t1 ID=Gcaud2597.t1|Name=Gcaud2597.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=984bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:37436..38419- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGCGTTTGTTCCAACCGCGACGCGTTGCGCTGCGCCATGTCGCGC
GAGTGCGGCAGTTAGCCGAGCGCAAAAGTCGTCATTCTTTGCATCCGTTC
CGCAGCGATCATTTCTTCCAAACCGTAACTCGTTACCTTCAACCATCCCC
ACTAAATCACTAGCCAACAAACCGACCATCCGAGCACCAGTCACTGCGGT
ACAGAAGTCTCCGGCGGAAACATTTGAGGCCGCTGTCACATTGGGATCGT
CCAAAGCGTCGCTCCCAAGCTGGAAGGTCACGCTTTTGGCCATTCTGGCC
GGCGCCTACATCGCATTAGGCGCGCTTCTAGCACTCTGCGTTGGCGGAGC
GGCTCCGGCAATGAAGGCCGCCAATCCAGGCTTGCAGAAACTATTGTTTG
GAGCGTTTGGATTGCCGGGCGGATTGCTGTTGGTGTGTGTTGCTGGTGGT
GAATTGTTCACAGGCAACACGGCACTGCTTACCTGTGCGTTCATGCAAAA
ACGCGCTGGTGCTGGCGGTGTGTTGCGTAATTGGATCTGGAGTTACATTG
GAAATGTGCTTGGTTGCGCGTTGGTCACATGGCTGGCGGTTGTGAGCGGA
TGCGTCGGAGGGGCTGGTGGTGCGGCAGCGGCGGCGATTGCGAGTGCCAA
GGTGGGTATGCCGTTCATGAAGGCGTTTCTGAAGGGGATTGTGTGCAACT
GGTTGGTATGCTTGGCGGTGTACACTCAGAATGGAGCGAATGATCTCATG
GGCAAGTTCATTGCCATCTGGCTGCCGATCTGCGCTTTCGTTGCGATGGG
ATTTGAACATTGCGTGGCTAACATGTTTCTGATTCCGTTTGGGATTGCCA
TGGGCGCGGAGGTTAGCGTGAAGCAGTATCTGATGGCGAACCTGTTGCCG
GTGTCGTTGGGGAATCTCGTAGCGGGAGTAGTGTTTGTTGGATTGGCTTA
TTCGCTTGCGTTTGGTAAGAAGGTCACCGCTTGA

protein sequence of Gcaud2597.t1

>Gcaud2597.t1 ID=Gcaud2597.t1|Name=Gcaud2597.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=328bp
MFAFVPTATRCAAPCRASAAVSRAQKSSFFASVPQRSFLPNRNSLPSTIP
TKSLANKPTIRAPVTAVQKSPAETFEAAVTLGSSKASLPSWKVTLLAILA
GAYIALGALLALCVGGAAPAMKAANPGLQKLLFGAFGLPGGLLLVCVAGG
ELFTGNTALLTCAFMQKRAGAGGVLRNWIWSYIGNVLGCALVTWLAVVSG
CVGGAGGAAAAAIASAKVGMPFMKAFLKGIVCNWLVCLAVYTQNGANDLM
GKFIAIWLPICAFVAMGFEHCVANMFLIPFGIAMGAEVSVKQYLMANLLP
VSLGNLVAGVVFVGLAYSLAFGKKVTA*

mRNA from alignment at NODE_53_length_63756_cov_4.464180:37436..38419-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2597.t1 ID=Gcaud2597.t1|Name=Gcaud2597.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=984bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:37436..38419- (Gracilaria caudata M_176_S67 male)
ATGTTTGCGTTTGTTCCAACCGCGACGCGTTGCGCTGCGCCATGTCGCGC
GAGTGCGGCAGTTAGCCGAGCGCAAAAGTCGTCATTCTTTGCATCCGTTC
CGCAGCGATCATTTCTTCCAAACCGTAACTCGTTACCTTCAACCATCCCC
ACTAAATCACTAGCCAACAAACCGACCATCCGAGCACCAGTCACTGCGGT
ACAGAAGTCTCCGGCGGAAACATTTGAGGCCGCTGTCACATTGGGATCGT
CCAAAGCGTCGCTCCCAAGCTGGAAGGTCACGCTTTTGGCCATTCTGGCC
GGCGCCTACATCGCATTAGGCGCGCTTCTAGCACTCTGCGTTGGCGGAGC
GGCTCCGGCAATGAAGGCCGCCAATCCAGGCTTGCAGAAACTATTGTTTG
GAGCGTTTGGATTGCCGGGCGGATTGCTGTTGGTGTGTGTTGCTGGTGGT
GAATTGTTCACAGGCAACACGGCACTGCTTACCTGTGCGTTCATGCAAAA
ACGCGCTGGTGCTGGCGGTGTGTTGCGTAATTGGATCTGGAGTTACATTG
GAAATGTGCTTGGTTGCGCGTTGGTCACATGGCTGGCGGTTGTGAGCGGA
TGCGTCGGAGGGGCTGGTGGTGCGGCAGCGGCGGCGATTGCGAGTGCCAA
GGTGGGTATGCCGTTCATGAAGGCGTTTCTGAAGGGGATTGTGTGCAACT
GGTTGGTATGCTTGGCGGTGTACACTCAGAATGGAGCGAATGATCTCATG
GGCAAGTTCATTGCCATCTGGCTGCCGATCTGCGCTTTCGTTGCGATGGG
ATTTGAACATTGCGTGGCTAACATGTTTCTGATTCCGTTTGGGATTGCCA
TGGGCGCGGAGGTTAGCGTGAAGCAGTATCTGATGGCGAACCTGTTGCCG
GTGTCGTTGGGGAATCTCGTAGCGGGAGTAGTGTTTGTTGGATTGGCTTA
TTCGCTTGCGTTTGGTAAGAAGGTCACCGCTTGA

Coding sequence (CDS) from alignment at NODE_53_length_63756_cov_4.464180:37436..38419-

>Gcaud2597.t1 ID=Gcaud2597.t1|Name=Gcaud2597.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=984bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:37436..38419- (Gracilaria caudata M_176_S67 male)
ATGTTTGCGTTTGTTCCAACCGCGACGCGTTGCGCTGCGCCATGTCGCGC
GAGTGCGGCAGTTAGCCGAGCGCAAAAGTCGTCATTCTTTGCATCCGTTC
CGCAGCGATCATTTCTTCCAAACCGTAACTCGTTACCTTCAACCATCCCC
ACTAAATCACTAGCCAACAAACCGACCATCCGAGCACCAGTCACTGCGGT
ACAGAAGTCTCCGGCGGAAACATTTGAGGCCGCTGTCACATTGGGATCGT
CCAAAGCGTCGCTCCCAAGCTGGAAGGTCACGCTTTTGGCCATTCTGGCC
GGCGCCTACATCGCATTAGGCGCGCTTCTAGCACTCTGCGTTGGCGGAGC
GGCTCCGGCAATGAAGGCCGCCAATCCAGGCTTGCAGAAACTATTGTTTG
GAGCGTTTGGATTGCCGGGCGGATTGCTGTTGGTGTGTGTTGCTGGTGGT
GAATTGTTCACAGGCAACACGGCACTGCTTACCTGTGCGTTCATGCAAAA
ACGCGCTGGTGCTGGCGGTGTGTTGCGTAATTGGATCTGGAGTTACATTG
GAAATGTGCTTGGTTGCGCGTTGGTCACATGGCTGGCGGTTGTGAGCGGA
TGCGTCGGAGGGGCTGGTGGTGCGGCAGCGGCGGCGATTGCGAGTGCCAA
GGTGGGTATGCCGTTCATGAAGGCGTTTCTGAAGGGGATTGTGTGCAACT
GGTTGGTATGCTTGGCGGTGTACACTCAGAATGGAGCGAATGATCTCATG
GGCAAGTTCATTGCCATCTGGCTGCCGATCTGCGCTTTCGTTGCGATGGG
ATTTGAACATTGCGTGGCTAACATGTTTCTGATTCCGTTTGGGATTGCCA
TGGGCGCGGAGGTTAGCGTGAAGCAGTATCTGATGGCGAACCTGTTGCCG
GTGTCGTTGGGGAATCTCGTAGCGGGAGTAGTGTTTGTTGGATTGGCTTA
TTCGCTTGCGTTTGGTAAGAAGGTCACCGCTTGA