Gcaud2596.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2596.t1
Unique Name	Gcaud2596.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	454

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_53_length_63756_cov_4.464180	contig	NODE_53_length_63756_cov_4.464180:34579..35940 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5911.EAR89400
PFAMs	Ank_2,Ank_3,Ank_4,HET,SET
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K06867,ko:K15502,ko:K19626
KEGG Pathway	ko04310,map04310
Evalue	4.29e-09
EggNOG OGs	COG2940@1\|root,KOG1082@2759\|Eukaryota
Description	Histone-lysine N-methyltransferase
COG category	Z
BRITE	ko00000,ko00001,ko01009,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2596	Gcaud2596	Gracilaria caudata M_176_S67 male	gene	NODE_53_length_63756_cov_4.464180 34579..35940 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2596.t1.stop1	Gcaud2596.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_53_length_63756_cov_4.464180 34579..34581 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2596.t1.CDS1	Gcaud2596.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_53_length_63756_cov_4.464180 34579..35940 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2596.t1.exon1	Gcaud2596.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_53_length_63756_cov_4.464180 34579..35940 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2596.t1.start1	Gcaud2596.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_53_length_63756_cov_4.464180 35938..35940 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2596.t1	Gcaud2596.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_53_length_63756_cov_4.464180 34579..35940 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_53_length_63756_cov_4.464180:34579..35940-
coding sequence from alignment at NODE_53_length_63756_cov_4.464180:34579..35940-

mRNA sequence

>Gcaud2596.t1 ID=Gcaud2596.t1|Name=Gcaud2596.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=454bp
MVDSRSKRFLRAAGNGQERTVQQYLRDGVNPNIQDEYGVTALHKAAIRGS
LALLKILLSRKNIDVNKTNGNYETALILAARNGNYFVVNNLLRHGADINH
VDRDGCNALDYAKQHDRRDIARILREAGARSTGNRGRADVSVLRQVVHED
TAKTMLLRLVQDPKARITARQLRNVTHESRISSLPLFVYANYLLHFLKRA
GHPAMGWFSDFDGSEDYLLGNVYYQASRLRLGKEGQFLVGAAAKYAQARG
LIRKGSAVNVVQFVRVVADNLKEKCKLQLVVEEVLKGFRGLDMRITNAER
MSSEALAKLNQLADNDRKIVEDTMRMRDYLNELHLALRRKERVDKIAGVF
RFLLSTVPVFGSALGNLAYSSAEIFFGLTSESLVGIGTDLVKGGVSLGLG
VDLSDSTSVGVVTSRRLLSKLTPKCRKRIEFAVRESKFEGLENISEDLRY
ADN*

spliced messenger RNA

>Gcaud2596.t1 ID=Gcaud2596.t1|Name=Gcaud2596.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1362bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:34579..35940- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGACAGTCGAAGCAAAAGATTCTTACGCGCAGCTGGCAATGGGCA
AGAGCGTACAGTGCAACAATATCTGAGAGACGGCGTTAATCCCAACATCC
AGGATGAATACGGCGTCACAGCCTTGCACAAAGCTGCTATTCGCGGTAGT
CTTGCTTTACTGAAGATCTTATTGAGTAGGAAGAACATCGATGTGAACAA
AACGAATGGAAACTATGAGACTGCTCTCATTTTAGCCGCTCGCAACGGAA
ATTATTTTGTTGTTAACAACCTTCTGAGACACGGAGCTGATATCAATCAT
GTGGACAGAGATGGATGCAACGCTTTGGATTATGCCAAACAACATGATCG
CAGAGATATAGCTCGTATTCTACGTGAGGCGGGAGCGCGCTCAACAGGAA
ACAGAGGAAGAGCTGACGTTTCGGTTCTTCGCCAAGTGGTACACGAAGAC
ACAGCAAAAACGATGCTTCTTCGACTTGTCCAGGATCCCAAGGCCCGTAT
AACAGCTCGTCAGCTTCGCAACGTAACGCATGAATCCAGAATAAGCAGTC
TACCGCTGTTCGTGTATGCCAATTATCTTCTCCACTTTCTGAAAAGGGCC
GGTCATCCTGCAATGGGTTGGTTCAGCGACTTCGATGGATCAGAAGACTA
CCTGCTTGGGAATGTGTATTACCAAGCATCTCGATTGCGCCTTGGCAAAG
AAGGCCAGTTTTTGGTTGGCGCAGCAGCTAAATATGCGCAAGCTCGTGGA
TTGATCCGCAAAGGCTCCGCCGTGAATGTCGTACAGTTCGTAAGGGTTGT
TGCTGATAATCTAAAAGAAAAATGCAAGCTTCAACTAGTTGTAGAAGAAG
TTCTAAAGGGGTTCCGGGGACTGGATATGCGAATAACGAATGCGGAGAGA
ATGTCCTCAGAAGCGTTGGCGAAGCTCAACCAGCTCGCAGATAATGACAG
GAAAATCGTGGAGGACACGATGAGAATGCGTGATTATCTTAATGAATTGC
ACTTGGCTTTGAGGAGGAAAGAGAGAGTAGATAAAATTGCTGGCGTGTTT
CGCTTTTTACTTTCGACTGTTCCCGTGTTCGGTTCAGCTTTAGGAAACCT
TGCATACTCATCTGCGGAGATTTTCTTCGGGTTGACTTCCGAGAGTTTGG
TCGGGATTGGAACTGATCTGGTGAAGGGCGGAGTATCGCTTGGTCTCGGT
GTAGATTTGAGTGATAGCACCAGTGTGGGTGTTGTGACGAGTAGACGACT
TCTTTCTAAACTGACTCCAAAATGCAGAAAGAGAATTGAATTCGCTGTCC
GCGAAAGCAAGTTTGAAGGCTTGGAAAACATTTCGGAAGATCTCAGGTAT
GCTGACAATTGA

protein sequence of Gcaud2596.t1

>Gcaud2596.t1 ID=Gcaud2596.t1|Name=Gcaud2596.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=454bp
MVDSRSKRFLRAAGNGQERTVQQYLRDGVNPNIQDEYGVTALHKAAIRGS
LALLKILLSRKNIDVNKTNGNYETALILAARNGNYFVVNNLLRHGADINH
VDRDGCNALDYAKQHDRRDIARILREAGARSTGNRGRADVSVLRQVVHED
TAKTMLLRLVQDPKARITARQLRNVTHESRISSLPLFVYANYLLHFLKRA
GHPAMGWFSDFDGSEDYLLGNVYYQASRLRLGKEGQFLVGAAAKYAQARG
LIRKGSAVNVVQFVRVVADNLKEKCKLQLVVEEVLKGFRGLDMRITNAER
MSSEALAKLNQLADNDRKIVEDTMRMRDYLNELHLALRRKERVDKIAGVF
RFLLSTVPVFGSALGNLAYSSAEIFFGLTSESLVGIGTDLVKGGVSLGLG
VDLSDSTSVGVVTSRRLLSKLTPKCRKRIEFAVRESKFEGLENISEDLRY
ADN*

mRNA from alignment at NODE_53_length_63756_cov_4.464180:34579..35940-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2596.t1 ID=Gcaud2596.t1|Name=Gcaud2596.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1362bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:34579..35940- (Gracilaria caudata M_176_S67 male)
ATGGTTGACAGTCGAAGCAAAAGATTCTTACGCGCAGCTGGCAATGGGCA
AGAGCGTACAGTGCAACAATATCTGAGAGACGGCGTTAATCCCAACATCC
AGGATGAATACGGCGTCACAGCCTTGCACAAAGCTGCTATTCGCGGTAGT
CTTGCTTTACTGAAGATCTTATTGAGTAGGAAGAACATCGATGTGAACAA
AACGAATGGAAACTATGAGACTGCTCTCATTTTAGCCGCTCGCAACGGAA
ATTATTTTGTTGTTAACAACCTTCTGAGACACGGAGCTGATATCAATCAT
GTGGACAGAGATGGATGCAACGCTTTGGATTATGCCAAACAACATGATCG
CAGAGATATAGCTCGTATTCTACGTGAGGCGGGAGCGCGCTCAACAGGAA
ACAGAGGAAGAGCTGACGTTTCGGTTCTTCGCCAAGTGGTACACGAAGAC
ACAGCAAAAACGATGCTTCTTCGACTTGTCCAGGATCCCAAGGCCCGTAT
AACAGCTCGTCAGCTTCGCAACGTAACGCATGAATCCAGAATAAGCAGTC
TACCGCTGTTCGTGTATGCCAATTATCTTCTCCACTTTCTGAAAAGGGCC
GGTCATCCTGCAATGGGTTGGTTCAGCGACTTCGATGGATCAGAAGACTA
CCTGCTTGGGAATGTGTATTACCAAGCATCTCGATTGCGCCTTGGCAAAG
AAGGCCAGTTTTTGGTTGGCGCAGCAGCTAAATATGCGCAAGCTCGTGGA
TTGATCCGCAAAGGCTCCGCCGTGAATGTCGTACAGTTCGTAAGGGTTGT
TGCTGATAATCTAAAAGAAAAATGCAAGCTTCAACTAGTTGTAGAAGAAG
TTCTAAAGGGGTTCCGGGGACTGGATATGCGAATAACGAATGCGGAGAGA
ATGTCCTCAGAAGCGTTGGCGAAGCTCAACCAGCTCGCAGATAATGACAG
GAAAATCGTGGAGGACACGATGAGAATGCGTGATTATCTTAATGAATTGC
ACTTGGCTTTGAGGAGGAAAGAGAGAGTAGATAAAATTGCTGGCGTGTTT
CGCTTTTTACTTTCGACTGTTCCCGTGTTCGGTTCAGCTTTAGGAAACCT
TGCATACTCATCTGCGGAGATTTTCTTCGGGTTGACTTCCGAGAGTTTGG
TCGGGATTGGAACTGATCTGGTGAAGGGCGGAGTATCGCTTGGTCTCGGT
GTAGATTTGAGTGATAGCACCAGTGTGGGTGTTGTGACGAGTAGACGACT
TCTTTCTAAACTGACTCCAAAATGCAGAAAGAGAATTGAATTCGCTGTCC
GCGAAAGCAAGTTTGAAGGCTTGGAAAACATTTCGGAAGATCTCAGGTAT
GCTGACAATTGA

Coding sequence (CDS) from alignment at NODE_53_length_63756_cov_4.464180:34579..35940-

>Gcaud2596.t1 ID=Gcaud2596.t1|Name=Gcaud2596.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1362bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:34579..35940- (Gracilaria caudata M_176_S67 male)
ATGGTTGACAGTCGAAGCAAAAGATTCTTACGCGCAGCTGGCAATGGGCA
AGAGCGTACAGTGCAACAATATCTGAGAGACGGCGTTAATCCCAACATCC
AGGATGAATACGGCGTCACAGCCTTGCACAAAGCTGCTATTCGCGGTAGT
CTTGCTTTACTGAAGATCTTATTGAGTAGGAAGAACATCGATGTGAACAA
AACGAATGGAAACTATGAGACTGCTCTCATTTTAGCCGCTCGCAACGGAA
ATTATTTTGTTGTTAACAACCTTCTGAGACACGGAGCTGATATCAATCAT
GTGGACAGAGATGGATGCAACGCTTTGGATTATGCCAAACAACATGATCG
CAGAGATATAGCTCGTATTCTACGTGAGGCGGGAGCGCGCTCAACAGGAA
ACAGAGGAAGAGCTGACGTTTCGGTTCTTCGCCAAGTGGTACACGAAGAC
ACAGCAAAAACGATGCTTCTTCGACTTGTCCAGGATCCCAAGGCCCGTAT
AACAGCTCGTCAGCTTCGCAACGTAACGCATGAATCCAGAATAAGCAGTC
TACCGCTGTTCGTGTATGCCAATTATCTTCTCCACTTTCTGAAAAGGGCC
GGTCATCCTGCAATGGGTTGGTTCAGCGACTTCGATGGATCAGAAGACTA
CCTGCTTGGGAATGTGTATTACCAAGCATCTCGATTGCGCCTTGGCAAAG
AAGGCCAGTTTTTGGTTGGCGCAGCAGCTAAATATGCGCAAGCTCGTGGA
TTGATCCGCAAAGGCTCCGCCGTGAATGTCGTACAGTTCGTAAGGGTTGT
TGCTGATAATCTAAAAGAAAAATGCAAGCTTCAACTAGTTGTAGAAGAAG
TTCTAAAGGGGTTCCGGGGACTGGATATGCGAATAACGAATGCGGAGAGA
ATGTCCTCAGAAGCGTTGGCGAAGCTCAACCAGCTCGCAGATAATGACAG
GAAAATCGTGGAGGACACGATGAGAATGCGTGATTATCTTAATGAATTGC
ACTTGGCTTTGAGGAGGAAAGAGAGAGTAGATAAAATTGCTGGCGTGTTT
CGCTTTTTACTTTCGACTGTTCCCGTGTTCGGTTCAGCTTTAGGAAACCT
TGCATACTCATCTGCGGAGATTTTCTTCGGGTTGACTTCCGAGAGTTTGG
TCGGGATTGGAACTGATCTGGTGAAGGGCGGAGTATCGCTTGGTCTCGGT
GTAGATTTGAGTGATAGCACCAGTGTGGGTGTTGTGACGAGTAGACGACT
TCTTTCTAAACTGACTCCAAAATGCAGAAAGAGAATTGAATTCGCTGTCC
GCGAAAGCAAGTTTGAAGGCTTGGAAAACATTTCGGAAGATCTCAGGTAT
GCTGACAATTGA