Gcaud2595.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2595.t1
Unique NameGcaud2595.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length467
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_53_length_63756_cov_4.464180contigNODE_53_length_63756_cov_4.464180:29133..30533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706051.1
Preferred nameCS
PFAMsCitrate_synt
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00067
KEGG koko:K01647
KEGG ReactionR00351
KEGG Pathwayko00020,ko00630,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map00630,map01100,map01110,map01120,map01130,map01200,map01210,map01230
KEGG ModuleM00009,M00010,M00012,M00740
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004108,GO:0005488,GO:0005524,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005777,GO:0005975,GO:0006081,GO:0006082,GO:0006084,GO:0006091,GO:0006097,GO:0006099,GO:0006101,GO:0006107,GO:0006139,GO:0006163,GO:0006195,GO:0006520,GO:0006536,GO:0006537,GO:0006629,GO:0006631,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0008652,GO:0009056,GO:0009058,GO:0009060,GO:0009062,GO:0009064,GO:0009084,GO:0009109,GO:0009117,GO:0009150,GO:0009154,GO:0009166,GO:0009259,GO:0009261,GO:0009403,GO:0009404,GO:0009507,GO:0009536,GO:0009987,GO:0010035,GO:0010038,GO:0014823,GO:0015980,GO:0016042,GO:0016053,GO:0016054,GO:0016740,GO:0016746,GO:0016999,GO:0017001,GO:0017076,GO:0017144,GO:0018130,GO:0019438,GO:0019439,GO:0019541,GO:0019543,GO:0019626,GO:0019629,GO:0019637,GO:0019679,GO:0019693,GO:0019748,GO:0019752,GO:0030312,GO:0030554,GO:0031974,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0033865,GO:0033869,GO:0033875,GO:0034031,GO:0034032,GO:0034034,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035383,GO:0035639,GO:0036094,GO:0036440,GO:0042221,GO:0042579,GO:0042737,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043385,GO:0043386,GO:0043436,GO:0043603,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044262,GO:0044270,GO:0044271,GO:0044273,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0045333,GO:0045460,GO:0045461,GO:0046356,GO:0046394,GO:0046395,GO:0046434,GO:0046459,GO:0046483,GO:0046487,GO:0046686,GO:0046700,GO:0046872,GO:0046912,GO:0046914,GO:0050440,GO:0050896,GO:0051186,GO:0051187,GO:0055086,GO:0055114,GO:0070013,GO:0071704,GO:0071944,GO:0072329,GO:0072350,GO:0072521,GO:0072523,GO:0097159,GO:0097367,GO:1901135,GO:1901136,GO:1901265,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901376,GO:1901378,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901607
Evalue1.16e-211
EggNOG OGsCOG0372@1|root,KOG2617@2759|Eukaryota
EC2.3.3.1
Descriptioncitrate (Si)-synthase activity
COG categoryC
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2595Gcaud2595Gracilaria caudata M_176_S67 malegeneNODE_53_length_63756_cov_4.464180 29133..30533 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2595.t1.stop1Gcaud2595.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_53_length_63756_cov_4.464180 29133..29135 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2595.t1.CDS1Gcaud2595.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_53_length_63756_cov_4.464180 29133..30533 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2595.t1.exon1Gcaud2595.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_53_length_63756_cov_4.464180 29133..30533 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2595.t1.start1Gcaud2595.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_53_length_63756_cov_4.464180 30531..30533 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2595.t1Gcaud2595.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_53_length_63756_cov_4.464180 29133..30533 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2595.t1 ID=Gcaud2595.t1|Name=Gcaud2595.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=467bp
MMLHRLRSVAPQLRSQIRHATVIAPANSSGLKEAIAAKIPSAIEEVKEVR
SKYGDMQLGTCTVTQAYGGMRSVKAMTYETSHLDTEEGIRFRGYTLPECQ
QMLPKAKGGEEPLPEALFWLLITGDMPTDKQIDALRSDLASRSKLPQSVI
DAIDALPLDMHPMTQFSMGIMAMQQQSVMAQEYAMGTPKSLFWEHCLEDS
LVILAQLPEVASRIYRRSFKGGSYIPSDAENLDLSANFARMMGFEDPHFD
ELMRLYLTIHADHEGGNVSAHTIRLVGSALSDPYLALSAGMNGLAGPLHG
LANQEVLRWIMNIQAKLGDAEPTKENLAELCWETLNSGKVIPGYGHAVLR
KTDPRYTCQREFALKHLGDDDMFNMVSLLYEVVPKVLAEQGKVKNPWPNV
DAHSGVLLRYYGLTEELYYTVLFGVSRAIGPLASLVWDRALGLPIERPKS
VTTAWIKNHFDNELAA*
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spliced messenger RNA

>Gcaud2595.t1 ID=Gcaud2595.t1|Name=Gcaud2595.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1401bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:29133..30533- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCTGCATCGACTTCGATCCGTTGCCCCTCAATTGCGCTCGCAGAT
TCGTCATGCGACGGTCATCGCCCCTGCAAACTCCTCAGGTTTGAAGGAAG
CAATCGCCGCCAAGATCCCTTCTGCGATCGAGGAGGTTAAGGAGGTGCGT
TCGAAATATGGTGATATGCAATTGGGAACGTGTACTGTTACACAGGCATA
TGGTGGGATGCGCAGTGTCAAGGCAATGACATATGAGACGTCTCATTTGG
ATACTGAAGAAGGAATTCGTTTTCGGGGTTATACACTTCCAGAATGTCAG
CAGATGTTACCAAAGGCAAAAGGTGGCGAAGAACCATTACCAGAGGCGTT
ATTCTGGCTGTTGATCACCGGTGATATGCCTACCGATAAGCAGATCGATG
CGTTACGGAGCGATTTGGCCAGCAGATCGAAGCTTCCACAGTCTGTTATT
GATGCTATTGATGCGCTGCCCTTGGATATGCATCCCATGACTCAGTTCTC
AATGGGCATTATGGCCATGCAGCAGCAGAGTGTCATGGCTCAGGAATACG
CTATGGGTACACCGAAGAGCCTGTTTTGGGAACACTGCTTAGAAGATTCA
CTCGTTATTCTTGCGCAATTACCAGAAGTTGCTTCTCGAATCTACAGGAG
ATCGTTCAAGGGCGGTTCATATATTCCGAGCGACGCTGAAAACTTGGATC
TTAGCGCTAACTTTGCGCGCATGATGGGCTTTGAAGATCCTCACTTCGAT
GAACTTATGAGATTGTATCTCACGATTCACGCCGATCATGAGGGAGGTAA
TGTGTCTGCTCACACCATTCGCTTGGTGGGATCGGCGTTGAGCGATCCTT
ACCTAGCACTTTCTGCCGGCATGAATGGTCTTGCTGGACCTTTGCATGGA
CTTGCAAACCAAGAAGTGCTACGCTGGATCATGAATATCCAAGCGAAATT
GGGAGATGCAGAACCTACGAAGGAGAATCTCGCGGAGCTCTGCTGGGAGA
CACTCAACTCCGGAAAGGTCATTCCGGGATATGGTCATGCTGTTCTTCGC
AAGACAGATCCGCGATATACATGTCAACGGGAGTTCGCCTTGAAGCACCT
GGGAGACGATGATATGTTCAACATGGTTTCTCTTTTGTATGAAGTCGTTC
CTAAAGTGCTTGCTGAGCAGGGTAAGGTGAAGAACCCGTGGCCGAATGTC
GACGCACATTCTGGAGTGCTCCTTAGGTACTACGGACTTACCGAAGAACT
GTACTACACAGTATTGTTCGGCGTCTCGCGCGCTATTGGTCCTTTGGCTA
GCCTTGTGTGGGATCGTGCTCTTGGTCTGCCCATCGAACGCCCCAAATCT
GTCACCACGGCTTGGATTAAGAATCACTTTGACAACGAATTGGCAGCATG
A
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protein sequence of Gcaud2595.t1

>Gcaud2595.t1 ID=Gcaud2595.t1|Name=Gcaud2595.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=467bp
MMLHRLRSVAPQLRSQIRHATVIAPANSSGLKEAIAAKIPSAIEEVKEVR
SKYGDMQLGTCTVTQAYGGMRSVKAMTYETSHLDTEEGIRFRGYTLPECQ
QMLPKAKGGEEPLPEALFWLLITGDMPTDKQIDALRSDLASRSKLPQSVI
DAIDALPLDMHPMTQFSMGIMAMQQQSVMAQEYAMGTPKSLFWEHCLEDS
LVILAQLPEVASRIYRRSFKGGSYIPSDAENLDLSANFARMMGFEDPHFD
ELMRLYLTIHADHEGGNVSAHTIRLVGSALSDPYLALSAGMNGLAGPLHG
LANQEVLRWIMNIQAKLGDAEPTKENLAELCWETLNSGKVIPGYGHAVLR
KTDPRYTCQREFALKHLGDDDMFNMVSLLYEVVPKVLAEQGKVKNPWPNV
DAHSGVLLRYYGLTEELYYTVLFGVSRAIGPLASLVWDRALGLPIERPKS
VTTAWIKNHFDNELAA*
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mRNA from alignment at NODE_53_length_63756_cov_4.464180:29133..30533-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2595.t1 ID=Gcaud2595.t1|Name=Gcaud2595.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1401bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:29133..30533- (Gracilaria caudata M_176_S67 male)
ATGATGCTGCATCGACTTCGATCCGTTGCCCCTCAATTGCGCTCGCAGAT
TCGTCATGCGACGGTCATCGCCCCTGCAAACTCCTCAGGTTTGAAGGAAG
CAATCGCCGCCAAGATCCCTTCTGCGATCGAGGAGGTTAAGGAGGTGCGT
TCGAAATATGGTGATATGCAATTGGGAACGTGTACTGTTACACAGGCATA
TGGTGGGATGCGCAGTGTCAAGGCAATGACATATGAGACGTCTCATTTGG
ATACTGAAGAAGGAATTCGTTTTCGGGGTTATACACTTCCAGAATGTCAG
CAGATGTTACCAAAGGCAAAAGGTGGCGAAGAACCATTACCAGAGGCGTT
ATTCTGGCTGTTGATCACCGGTGATATGCCTACCGATAAGCAGATCGATG
CGTTACGGAGCGATTTGGCCAGCAGATCGAAGCTTCCACAGTCTGTTATT
GATGCTATTGATGCGCTGCCCTTGGATATGCATCCCATGACTCAGTTCTC
AATGGGCATTATGGCCATGCAGCAGCAGAGTGTCATGGCTCAGGAATACG
CTATGGGTACACCGAAGAGCCTGTTTTGGGAACACTGCTTAGAAGATTCA
CTCGTTATTCTTGCGCAATTACCAGAAGTTGCTTCTCGAATCTACAGGAG
ATCGTTCAAGGGCGGTTCATATATTCCGAGCGACGCTGAAAACTTGGATC
TTAGCGCTAACTTTGCGCGCATGATGGGCTTTGAAGATCCTCACTTCGAT
GAACTTATGAGATTGTATCTCACGATTCACGCCGATCATGAGGGAGGTAA
TGTGTCTGCTCACACCATTCGCTTGGTGGGATCGGCGTTGAGCGATCCTT
ACCTAGCACTTTCTGCCGGCATGAATGGTCTTGCTGGACCTTTGCATGGA
CTTGCAAACCAAGAAGTGCTACGCTGGATCATGAATATCCAAGCGAAATT
GGGAGATGCAGAACCTACGAAGGAGAATCTCGCGGAGCTCTGCTGGGAGA
CACTCAACTCCGGAAAGGTCATTCCGGGATATGGTCATGCTGTTCTTCGC
AAGACAGATCCGCGATATACATGTCAACGGGAGTTCGCCTTGAAGCACCT
GGGAGACGATGATATGTTCAACATGGTTTCTCTTTTGTATGAAGTCGTTC
CTAAAGTGCTTGCTGAGCAGGGTAAGGTGAAGAACCCGTGGCCGAATGTC
GACGCACATTCTGGAGTGCTCCTTAGGTACTACGGACTTACCGAAGAACT
GTACTACACAGTATTGTTCGGCGTCTCGCGCGCTATTGGTCCTTTGGCTA
GCCTTGTGTGGGATCGTGCTCTTGGTCTGCCCATCGAACGCCCCAAATCT
GTCACCACGGCTTGGATTAAGAATCACTTTGACAACGAATTGGCAGCATG
A
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Coding sequence (CDS) from alignment at NODE_53_length_63756_cov_4.464180:29133..30533-

>Gcaud2595.t1 ID=Gcaud2595.t1|Name=Gcaud2595.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1401bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:29133..30533- (Gracilaria caudata M_176_S67 male)
ATGATGCTGCATCGACTTCGATCCGTTGCCCCTCAATTGCGCTCGCAGAT
TCGTCATGCGACGGTCATCGCCCCTGCAAACTCCTCAGGTTTGAAGGAAG
CAATCGCCGCCAAGATCCCTTCTGCGATCGAGGAGGTTAAGGAGGTGCGT
TCGAAATATGGTGATATGCAATTGGGAACGTGTACTGTTACACAGGCATA
TGGTGGGATGCGCAGTGTCAAGGCAATGACATATGAGACGTCTCATTTGG
ATACTGAAGAAGGAATTCGTTTTCGGGGTTATACACTTCCAGAATGTCAG
CAGATGTTACCAAAGGCAAAAGGTGGCGAAGAACCATTACCAGAGGCGTT
ATTCTGGCTGTTGATCACCGGTGATATGCCTACCGATAAGCAGATCGATG
CGTTACGGAGCGATTTGGCCAGCAGATCGAAGCTTCCACAGTCTGTTATT
GATGCTATTGATGCGCTGCCCTTGGATATGCATCCCATGACTCAGTTCTC
AATGGGCATTATGGCCATGCAGCAGCAGAGTGTCATGGCTCAGGAATACG
CTATGGGTACACCGAAGAGCCTGTTTTGGGAACACTGCTTAGAAGATTCA
CTCGTTATTCTTGCGCAATTACCAGAAGTTGCTTCTCGAATCTACAGGAG
ATCGTTCAAGGGCGGTTCATATATTCCGAGCGACGCTGAAAACTTGGATC
TTAGCGCTAACTTTGCGCGCATGATGGGCTTTGAAGATCCTCACTTCGAT
GAACTTATGAGATTGTATCTCACGATTCACGCCGATCATGAGGGAGGTAA
TGTGTCTGCTCACACCATTCGCTTGGTGGGATCGGCGTTGAGCGATCCTT
ACCTAGCACTTTCTGCCGGCATGAATGGTCTTGCTGGACCTTTGCATGGA
CTTGCAAACCAAGAAGTGCTACGCTGGATCATGAATATCCAAGCGAAATT
GGGAGATGCAGAACCTACGAAGGAGAATCTCGCGGAGCTCTGCTGGGAGA
CACTCAACTCCGGAAAGGTCATTCCGGGATATGGTCATGCTGTTCTTCGC
AAGACAGATCCGCGATATACATGTCAACGGGAGTTCGCCTTGAAGCACCT
GGGAGACGATGATATGTTCAACATGGTTTCTCTTTTGTATGAAGTCGTTC
CTAAAGTGCTTGCTGAGCAGGGTAAGGTGAAGAACCCGTGGCCGAATGTC
GACGCACATTCTGGAGTGCTCCTTAGGTACTACGGACTTACCGAAGAACT
GTACTACACAGTATTGTTCGGCGTCTCGCGCGCTATTGGTCCTTTGGCTA
GCCTTGTGTGGGATCGTGCTCTTGGTCTGCCCATCGAACGCCCCAAATCT
GTCACCACGGCTTGGATTAAGAATCACTTTGACAACGAATTGGCAGCATG
A
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