Gcaud2594.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2594.t1
Unique Name	Gcaud2594.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	378

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_53_length_63756_cov_4.464180	contig	NODE_53_length_63756_cov_4.464180:27374..28507 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4530.OS12T0137200-01
PFAMs	Sacchrp_dh_NADP
Max annot lvl	35493\|Streptophyta
Evalue	7.55e-77
EggNOG OGs	COG1748@1\|root,2QQSS@2759\|Eukaryota,37KRX@33090\|Viridiplantae,3GBGB@35493\|Streptophyta,3KQ39@4447\|Liliopsida,3IBXK@38820\|Poales
Description	Saccharopine dehydrogenase NADP binding domain
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2594	Gcaud2594	Gracilaria caudata M_176_S67 male	gene	NODE_53_length_63756_cov_4.464180 27374..28507 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2594.t1.start1	Gcaud2594.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_53_length_63756_cov_4.464180 27374..27376 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2594.t1.CDS1	Gcaud2594.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_53_length_63756_cov_4.464180 27374..28507 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2594.t1.exon1	Gcaud2594.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_53_length_63756_cov_4.464180 27374..28507 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2594.t1.stop1	Gcaud2594.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_53_length_63756_cov_4.464180 28505..28507 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2594.t1	Gcaud2594.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_53_length_63756_cov_4.464180 27374..28507 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_53_length_63756_cov_4.464180:27374..28507+
coding sequence from alignment at NODE_53_length_63756_cov_4.464180:27374..28507+

mRNA sequence

>Gcaud2594.t1 ID=Gcaud2594.t1|Name=Gcaud2594.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=378bp
MSSSPNVLVLGGTGRVGTETIKALSRISSQQLNITLSGRNVTRGNAIRDE
LQSAHALHHFSFIKADITDSQSLPAMFRQFDLIVHTAGPFQRKESPDIVL
RAAMQAKVKYMDVCDDVQHAQDCKQLHEEACKRGYTALISTGIYPGLSNL
MAAEVCSSMSDVDTLKLYYHTAGTGGIGATILASTFLLLSEQALCFLNGK
PVLRPPAGDTEVFDFRGNIGRKTTYLLNLPEVASLHDAIAPNATIWAKFS
TGPPIWNWLLLATARWVPNSFLRNRTATLKFSQFSLPVVRFVDMLSGART
AMAVHVEGTGRRIEYCFEHDSLAACVGEATAAFAFEMLTSNSIEPGVHFP
EQLNATTRQKIIKNASLTANFCEMKKM*

spliced messenger RNA

>Gcaud2594.t1 ID=Gcaud2594.t1|Name=Gcaud2594.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1134bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:27374..28507+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTCGAGTCCAAACGTATTGGTTCTGGGTGGCACCGGGCGAGTTGG
AACGGAGACAATTAAGGCCCTCTCGCGCATCTCATCGCAACAGTTGAATA
TAACTCTCAGCGGACGCAATGTGACCCGTGGAAATGCGATACGCGATGAA
CTTCAATCAGCACATGCGCTTCATCATTTCTCTTTTATCAAAGCAGATAT
AACAGATTCACAGTCTTTGCCAGCTATGTTTAGACAATTTGACCTCATAG
TACACACTGCTGGCCCCTTTCAACGGAAGGAATCTCCAGATATCGTACTA
CGAGCGGCTATGCAAGCGAAGGTGAAGTACATGGACGTTTGCGATGATGT
TCAGCATGCTCAAGACTGTAAACAACTTCATGAGGAGGCCTGTAAACGAG
GATATACTGCACTCATATCTACTGGAATATACCCCGGTCTCAGCAACTTA
ATGGCTGCGGAGGTATGCTCATCTATGAGCGATGTGGATACCCTGAAGCT
GTACTATCACACAGCAGGAACTGGTGGCATAGGCGCCACAATCTTAGCCA
GTACCTTTCTCCTGCTGAGCGAACAAGCATTATGTTTTTTGAACGGCAAG
CCAGTACTACGACCTCCTGCTGGTGATACTGAGGTATTCGATTTTAGAGG
CAATATCGGTCGTAAGACAACGTACCTACTGAACTTGCCAGAAGTAGCTT
CGTTGCACGACGCAATCGCACCAAATGCTACCATCTGGGCAAAGTTCAGC
ACGGGACCCCCAATATGGAACTGGCTACTACTGGCAACAGCCAGATGGGT
ACCAAACAGTTTTCTGAGAAACCGAACTGCAACGCTCAAGTTTTCGCAGT
TTAGTCTTCCAGTTGTTCGCTTTGTGGATATGCTCAGCGGTGCACGCACT
GCGATGGCCGTTCACGTAGAAGGGACTGGGCGTCGAATAGAATACTGCTT
TGAACATGACAGCTTAGCTGCGTGTGTCGGAGAGGCGACGGCAGCGTTCG
CATTTGAAATGTTGACGTCAAACTCCATAGAACCAGGTGTACACTTTCCA
GAACAACTTAATGCAACCACGCGGCAGAAAATTATCAAGAACGCGAGCTT
GACGGCAAACTTTTGCGAAATGAAGAAAATGTAG

protein sequence of Gcaud2594.t1

>Gcaud2594.t1 ID=Gcaud2594.t1|Name=Gcaud2594.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=378bp
MSSSPNVLVLGGTGRVGTETIKALSRISSQQLNITLSGRNVTRGNAIRDE
LQSAHALHHFSFIKADITDSQSLPAMFRQFDLIVHTAGPFQRKESPDIVL
RAAMQAKVKYMDVCDDVQHAQDCKQLHEEACKRGYTALISTGIYPGLSNL
MAAEVCSSMSDVDTLKLYYHTAGTGGIGATILASTFLLLSEQALCFLNGK
PVLRPPAGDTEVFDFRGNIGRKTTYLLNLPEVASLHDAIAPNATIWAKFS
TGPPIWNWLLLATARWVPNSFLRNRTATLKFSQFSLPVVRFVDMLSGART
AMAVHVEGTGRRIEYCFEHDSLAACVGEATAAFAFEMLTSNSIEPGVHFP
EQLNATTRQKIIKNASLTANFCEMKKM*

mRNA from alignment at NODE_53_length_63756_cov_4.464180:27374..28507+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2594.t1 ID=Gcaud2594.t1|Name=Gcaud2594.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1134bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:27374..28507+ (Gracilaria caudata M_176_S67 male)
ATGTCCTCGAGTCCAAACGTATTGGTTCTGGGTGGCACCGGGCGAGTTGG
AACGGAGACAATTAAGGCCCTCTCGCGCATCTCATCGCAACAGTTGAATA
TAACTCTCAGCGGACGCAATGTGACCCGTGGAAATGCGATACGCGATGAA
CTTCAATCAGCACATGCGCTTCATCATTTCTCTTTTATCAAAGCAGATAT
AACAGATTCACAGTCTTTGCCAGCTATGTTTAGACAATTTGACCTCATAG
TACACACTGCTGGCCCCTTTCAACGGAAGGAATCTCCAGATATCGTACTA
CGAGCGGCTATGCAAGCGAAGGTGAAGTACATGGACGTTTGCGATGATGT
TCAGCATGCTCAAGACTGTAAACAACTTCATGAGGAGGCCTGTAAACGAG
GATATACTGCACTCATATCTACTGGAATATACCCCGGTCTCAGCAACTTA
ATGGCTGCGGAGGTATGCTCATCTATGAGCGATGTGGATACCCTGAAGCT
GTACTATCACACAGCAGGAACTGGTGGCATAGGCGCCACAATCTTAGCCA
GTACCTTTCTCCTGCTGAGCGAACAAGCATTATGTTTTTTGAACGGCAAG
CCAGTACTACGACCTCCTGCTGGTGATACTGAGGTATTCGATTTTAGAGG
CAATATCGGTCGTAAGACAACGTACCTACTGAACTTGCCAGAAGTAGCTT
CGTTGCACGACGCAATCGCACCAAATGCTACCATCTGGGCAAAGTTCAGC
ACGGGACCCCCAATATGGAACTGGCTACTACTGGCAACAGCCAGATGGGT
ACCAAACAGTTTTCTGAGAAACCGAACTGCAACGCTCAAGTTTTCGCAGT
TTAGTCTTCCAGTTGTTCGCTTTGTGGATATGCTCAGCGGTGCACGCACT
GCGATGGCCGTTCACGTAGAAGGGACTGGGCGTCGAATAGAATACTGCTT
TGAACATGACAGCTTAGCTGCGTGTGTCGGAGAGGCGACGGCAGCGTTCG
CATTTGAAATGTTGACGTCAAACTCCATAGAACCAGGTGTACACTTTCCA
GAACAACTTAATGCAACCACGCGGCAGAAAATTATCAAGAACGCGAGCTT
GACGGCAAACTTTTGCGAAATGAAGAAAATGTAG

Coding sequence (CDS) from alignment at NODE_53_length_63756_cov_4.464180:27374..28507+

>Gcaud2594.t1 ID=Gcaud2594.t1|Name=Gcaud2594.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1134bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:27374..28507+ (Gracilaria caudata M_176_S67 male)
ATGTCCTCGAGTCCAAACGTATTGGTTCTGGGTGGCACCGGGCGAGTTGG
AACGGAGACAATTAAGGCCCTCTCGCGCATCTCATCGCAACAGTTGAATA
TAACTCTCAGCGGACGCAATGTGACCCGTGGAAATGCGATACGCGATGAA
CTTCAATCAGCACATGCGCTTCATCATTTCTCTTTTATCAAAGCAGATAT
AACAGATTCACAGTCTTTGCCAGCTATGTTTAGACAATTTGACCTCATAG
TACACACTGCTGGCCCCTTTCAACGGAAGGAATCTCCAGATATCGTACTA
CGAGCGGCTATGCAAGCGAAGGTGAAGTACATGGACGTTTGCGATGATGT
TCAGCATGCTCAAGACTGTAAACAACTTCATGAGGAGGCCTGTAAACGAG
GATATACTGCACTCATATCTACTGGAATATACCCCGGTCTCAGCAACTTA
ATGGCTGCGGAGGTATGCTCATCTATGAGCGATGTGGATACCCTGAAGCT
GTACTATCACACAGCAGGAACTGGTGGCATAGGCGCCACAATCTTAGCCA
GTACCTTTCTCCTGCTGAGCGAACAAGCATTATGTTTTTTGAACGGCAAG
CCAGTACTACGACCTCCTGCTGGTGATACTGAGGTATTCGATTTTAGAGG
CAATATCGGTCGTAAGACAACGTACCTACTGAACTTGCCAGAAGTAGCTT
CGTTGCACGACGCAATCGCACCAAATGCTACCATCTGGGCAAAGTTCAGC
ACGGGACCCCCAATATGGAACTGGCTACTACTGGCAACAGCCAGATGGGT
ACCAAACAGTTTTCTGAGAAACCGAACTGCAACGCTCAAGTTTTCGCAGT
TTAGTCTTCCAGTTGTTCGCTTTGTGGATATGCTCAGCGGTGCACGCACT
GCGATGGCCGTTCACGTAGAAGGGACTGGGCGTCGAATAGAATACTGCTT
TGAACATGACAGCTTAGCTGCGTGTGTCGGAGAGGCGACGGCAGCGTTCG
CATTTGAAATGTTGACGTCAAACTCCATAGAACCAGGTGTACACTTTCCA
GAACAACTTAATGCAACCACGCGGCAGAAAATTATCAAGAACGCGAGCTT
GACGGCAAACTTTTGCGAAATGAAGAAAATGTAG