Gcaud2593.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2593.t1
Unique Name	Gcaud2593.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	389

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_53_length_63756_cov_4.464180	contig	NODE_53_length_63756_cov_4.464180:25219..26385 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45351.EDO33166
Preferred name	FAM63B
PFAMs	MINDY_DUB
Max annot lvl	33208\|Metazoa
GOs	GO:0003674,GO:0003824,GO:0004180,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008238,GO:0009987,GO:0016579,GO:0016604,GO:0016787,GO:0016807,GO:0019538,GO:0031593,GO:0031974,GO:0031981,GO:0036211,GO:0036435,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0070004,GO:0070011,GO:0070013,GO:0070530,GO:0070646,GO:0070647,GO:0071108,GO:0071704,GO:0071795,GO:0071796,GO:0101005,GO:0140030,GO:0140096,GO:1901564,GO:1990380
Evalue	1.57e-52
EggNOG OGs	KOG2427@1\|root,KOG2427@2759\|Eukaryota,38CZP@33154\|Opisthokonta,3BBID@33208\|Metazoa
Description	K48-linked polyubiquitin modification-dependent protein binding
COG category	U

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2593	Gcaud2593	Gracilaria caudata M_176_S67 male	gene	NODE_53_length_63756_cov_4.464180 25219..26385 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2593.t1.start1	Gcaud2593.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_53_length_63756_cov_4.464180 25219..25221 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2593.t1.CDS1	Gcaud2593.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_53_length_63756_cov_4.464180 25219..26385 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2593.t1.exon1	Gcaud2593.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_53_length_63756_cov_4.464180 25219..26385 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2593.t1.stop1	Gcaud2593.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_53_length_63756_cov_4.464180 26383..26385 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2593.t1	Gcaud2593.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_53_length_63756_cov_4.464180 25219..26385 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_53_length_63756_cov_4.464180:25219..26385+
coding sequence from alignment at NODE_53_length_63756_cov_4.464180:25219..26385+

mRNA sequence

>Gcaud2593.t1 ID=Gcaud2593.t1|Name=Gcaud2593.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=389bp
MSRASPQVGEQPSASTPTPPVPASSEQPPSYRVKWLVTPTTSTPILLQNQ
NGPCALLALANAMLLTGHTTIRPGTTELPESDLMSLLADWASRPPASADP
QREHAVADFLDLLPRLTSGMTINVRFTSPTAFEFTREVGVFDIFPLRLLH
GWLVDPQDAPLTAALGNLTYNQVVDELVATAPDTCASADPSAPPPEAFEE
PDEPEIPPPEESPETANIREVRPAVMDFFENNPTQLTVYGLAELHSIMNH
SETAILFRNSHFYVVRKHKGEIYTLVTDEGYLRENCVWEKLMDVNGDSTF
YNAQFHKLSPDGRVIDPAPKGAGASNSQSSSAPSAKGPSVGHTRPAQAAQ
QRPAQPNPYSGSTLGNQASDCSGTGFGRRKKDDRCVIQ*

spliced messenger RNA

>Gcaud2593.t1 ID=Gcaud2593.t1|Name=Gcaud2593.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1167bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:25219..26385+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCACGCGCCTCACCGCAAGTGGGAGAGCAGCCATCGGCTTCCACGCC
CACCCCACCTGTCCCTGCTTCGTCGGAACAGCCCCCATCGTATCGCGTCA
AGTGGCTCGTCACACCCACAACTAGCACGCCAATTTTGCTTCAGAACCAG
AACGGACCATGCGCTCTTCTCGCACTGGCGAACGCTATGCTACTTACTGG
CCACACCACAATACGACCGGGCACAACCGAGCTACCAGAATCCGATCTCA
TGTCTCTGCTTGCCGACTGGGCCTCACGCCCCCCTGCGTCCGCCGACCCT
CAACGTGAGCACGCCGTCGCCGATTTTCTGGACTTGCTTCCGCGTCTCAC
ATCTGGAATGACCATTAACGTGCGTTTCACATCACCTACTGCCTTTGAAT
TCACCCGCGAAGTCGGTGTGTTTGATATATTCCCACTTCGCTTGTTACAC
GGTTGGCTCGTCGACCCGCAAGATGCGCCCTTAACCGCTGCGTTGGGAAA
CTTGACCTACAATCAAGTTGTCGATGAACTCGTAGCTACGGCCCCGGATA
CCTGTGCGTCTGCTGATCCTTCCGCGCCGCCTCCCGAAGCGTTCGAAGAA
CCGGACGAGCCGGAAATTCCACCACCAGAAGAATCTCCGGAGACAGCGAA
TATCCGCGAGGTGCGACCAGCTGTGATGGACTTTTTTGAGAATAACCCTA
CTCAGCTAACTGTTTACGGTTTGGCAGAGTTACATTCCATCATGAACCAC
AGCGAGACAGCTATCCTGTTTCGTAATTCGCACTTTTATGTGGTGCGTAA
GCACAAAGGTGAGATATATACTCTGGTCACAGACGAAGGCTACTTGAGAG
AGAACTGCGTGTGGGAGAAGCTTATGGACGTGAACGGAGATAGCACGTTC
TACAACGCACAATTCCACAAGCTATCGCCTGATGGACGCGTCATCGATCC
CGCGCCAAAAGGCGCCGGCGCCTCCAATTCGCAAAGCTCTAGTGCGCCCT
CGGCGAAGGGCCCATCGGTGGGACACACCAGACCTGCTCAAGCAGCACAA
CAACGTCCGGCCCAGCCAAACCCGTACTCAGGTTCCACACTTGGAAATCA
GGCGAGTGACTGCTCCGGGACAGGTTTCGGCAGAAGGAAAAAGGATGATA
GATGCGTAATTCAGTAA

protein sequence of Gcaud2593.t1

>Gcaud2593.t1 ID=Gcaud2593.t1|Name=Gcaud2593.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=389bp
MSRASPQVGEQPSASTPTPPVPASSEQPPSYRVKWLVTPTTSTPILLQNQ
NGPCALLALANAMLLTGHTTIRPGTTELPESDLMSLLADWASRPPASADP
QREHAVADFLDLLPRLTSGMTINVRFTSPTAFEFTREVGVFDIFPLRLLH
GWLVDPQDAPLTAALGNLTYNQVVDELVATAPDTCASADPSAPPPEAFEE
PDEPEIPPPEESPETANIREVRPAVMDFFENNPTQLTVYGLAELHSIMNH
SETAILFRNSHFYVVRKHKGEIYTLVTDEGYLRENCVWEKLMDVNGDSTF
YNAQFHKLSPDGRVIDPAPKGAGASNSQSSSAPSAKGPSVGHTRPAQAAQ
QRPAQPNPYSGSTLGNQASDCSGTGFGRRKKDDRCVIQ*

mRNA from alignment at NODE_53_length_63756_cov_4.464180:25219..26385+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2593.t1 ID=Gcaud2593.t1|Name=Gcaud2593.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1167bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:25219..26385+ (Gracilaria caudata M_176_S67 male)
ATGTCACGCGCCTCACCGCAAGTGGGAGAGCAGCCATCGGCTTCCACGCC
CACCCCACCTGTCCCTGCTTCGTCGGAACAGCCCCCATCGTATCGCGTCA
AGTGGCTCGTCACACCCACAACTAGCACGCCAATTTTGCTTCAGAACCAG
AACGGACCATGCGCTCTTCTCGCACTGGCGAACGCTATGCTACTTACTGG
CCACACCACAATACGACCGGGCACAACCGAGCTACCAGAATCCGATCTCA
TGTCTCTGCTTGCCGACTGGGCCTCACGCCCCCCTGCGTCCGCCGACCCT
CAACGTGAGCACGCCGTCGCCGATTTTCTGGACTTGCTTCCGCGTCTCAC
ATCTGGAATGACCATTAACGTGCGTTTCACATCACCTACTGCCTTTGAAT
TCACCCGCGAAGTCGGTGTGTTTGATATATTCCCACTTCGCTTGTTACAC
GGTTGGCTCGTCGACCCGCAAGATGCGCCCTTAACCGCTGCGTTGGGAAA
CTTGACCTACAATCAAGTTGTCGATGAACTCGTAGCTACGGCCCCGGATA
CCTGTGCGTCTGCTGATCCTTCCGCGCCGCCTCCCGAAGCGTTCGAAGAA
CCGGACGAGCCGGAAATTCCACCACCAGAAGAATCTCCGGAGACAGCGAA
TATCCGCGAGGTGCGACCAGCTGTGATGGACTTTTTTGAGAATAACCCTA
CTCAGCTAACTGTTTACGGTTTGGCAGAGTTACATTCCATCATGAACCAC
AGCGAGACAGCTATCCTGTTTCGTAATTCGCACTTTTATGTGGTGCGTAA
GCACAAAGGTGAGATATATACTCTGGTCACAGACGAAGGCTACTTGAGAG
AGAACTGCGTGTGGGAGAAGCTTATGGACGTGAACGGAGATAGCACGTTC
TACAACGCACAATTCCACAAGCTATCGCCTGATGGACGCGTCATCGATCC
CGCGCCAAAAGGCGCCGGCGCCTCCAATTCGCAAAGCTCTAGTGCGCCCT
CGGCGAAGGGCCCATCGGTGGGACACACCAGACCTGCTCAAGCAGCACAA
CAACGTCCGGCCCAGCCAAACCCGTACTCAGGTTCCACACTTGGAAATCA
GGCGAGTGACTGCTCCGGGACAGGTTTCGGCAGAAGGAAAAAGGATGATA
GATGCGTAATTCAGTAA

Coding sequence (CDS) from alignment at NODE_53_length_63756_cov_4.464180:25219..26385+

>Gcaud2593.t1 ID=Gcaud2593.t1|Name=Gcaud2593.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1167bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:25219..26385+ (Gracilaria caudata M_176_S67 male)
ATGTCACGCGCCTCACCGCAAGTGGGAGAGCAGCCATCGGCTTCCACGCC
CACCCCACCTGTCCCTGCTTCGTCGGAACAGCCCCCATCGTATCGCGTCA
AGTGGCTCGTCACACCCACAACTAGCACGCCAATTTTGCTTCAGAACCAG
AACGGACCATGCGCTCTTCTCGCACTGGCGAACGCTATGCTACTTACTGG
CCACACCACAATACGACCGGGCACAACCGAGCTACCAGAATCCGATCTCA
TGTCTCTGCTTGCCGACTGGGCCTCACGCCCCCCTGCGTCCGCCGACCCT
CAACGTGAGCACGCCGTCGCCGATTTTCTGGACTTGCTTCCGCGTCTCAC
ATCTGGAATGACCATTAACGTGCGTTTCACATCACCTACTGCCTTTGAAT
TCACCCGCGAAGTCGGTGTGTTTGATATATTCCCACTTCGCTTGTTACAC
GGTTGGCTCGTCGACCCGCAAGATGCGCCCTTAACCGCTGCGTTGGGAAA
CTTGACCTACAATCAAGTTGTCGATGAACTCGTAGCTACGGCCCCGGATA
CCTGTGCGTCTGCTGATCCTTCCGCGCCGCCTCCCGAAGCGTTCGAAGAA
CCGGACGAGCCGGAAATTCCACCACCAGAAGAATCTCCGGAGACAGCGAA
TATCCGCGAGGTGCGACCAGCTGTGATGGACTTTTTTGAGAATAACCCTA
CTCAGCTAACTGTTTACGGTTTGGCAGAGTTACATTCCATCATGAACCAC
AGCGAGACAGCTATCCTGTTTCGTAATTCGCACTTTTATGTGGTGCGTAA
GCACAAAGGTGAGATATATACTCTGGTCACAGACGAAGGCTACTTGAGAG
AGAACTGCGTGTGGGAGAAGCTTATGGACGTGAACGGAGATAGCACGTTC
TACAACGCACAATTCCACAAGCTATCGCCTGATGGACGCGTCATCGATCC
CGCGCCAAAAGGCGCCGGCGCCTCCAATTCGCAAAGCTCTAGTGCGCCCT
CGGCGAAGGGCCCATCGGTGGGACACACCAGACCTGCTCAAGCAGCACAA
CAACGTCCGGCCCAGCCAAACCCGTACTCAGGTTCCACACTTGGAAATCA
GGCGAGTGACTGCTCCGGGACAGGTTTCGGCAGAAGGAAAAAGGATGATA
GATGCGTAATTCAGTAA