Gcaud2591.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2591.t1
Unique NameGcaud2591.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length215
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_53_length_63756_cov_4.464180contigNODE_53_length_63756_cov_4.464180:22234..22878 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2591Gcaud2591Gracilaria caudata M_176_S67 malegeneNODE_53_length_63756_cov_4.464180 22234..22878 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2591.t1.stop1Gcaud2591.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_53_length_63756_cov_4.464180 22234..22236 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2591.t1.CDS1Gcaud2591.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_53_length_63756_cov_4.464180 22234..22878 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2591.t1.exon1Gcaud2591.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_53_length_63756_cov_4.464180 22234..22878 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2591.t1.start1Gcaud2591.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_53_length_63756_cov_4.464180 22876..22878 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2591.t1Gcaud2591.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_53_length_63756_cov_4.464180 22234..22878 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2591.t1 ID=Gcaud2591.t1|Name=Gcaud2591.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=215bp
MRLAAVFFATVAAVVTAQFATEEAYLEFETEYGPIPSSHCSYYKKLQEQL
MSVVTVLINCGISKEKATDFVKWVVNENVFTVVDEPDMVCIPPESNTDIG
TRLGEIAREHIRTKGWDKRRRDDSPQLAFDGTDRDDTLAQKSCCRCSADE
YPRGKGKCKAGPCCPNACSSLNRLTGGSAEMVSSCCEESVTQCVHKRGKQ
NSDGQRGKRRPPTF*
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spliced messenger RNA

>Gcaud2591.t1 ID=Gcaud2591.t1|Name=Gcaud2591.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=645bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:22234..22878- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCTTGCCGCAGTGTTCTTCGCTACCGTGGCAGCAGTTGTTACTGC
TCAGTTCGCCACGGAAGAGGCTTATCTGGAGTTTGAAACTGAGTACGGCC
CGATTCCATCTTCTCACTGCAGTTATTACAAGAAGCTTCAGGAGCAATTG
ATGTCTGTTGTGACTGTTTTAATTAACTGCGGAATATCCAAGGAGAAAGC
TACAGACTTCGTGAAATGGGTTGTGAACGAGAATGTGTTTACGGTCGTTG
ACGAGCCCGACATGGTTTGCATTCCGCCGGAGTCCAACACGGATATTGGT
ACACGTTTAGGGGAGATTGCTCGCGAACATATCCGAACCAAGGGATGGGA
TAAGCGTCGTCGCGATGATTCTCCTCAGCTGGCGTTTGACGGAACTGATA
GAGATGATACGCTTGCGCAAAAGTCGTGCTGCCGGTGCAGTGCCGATGAG
TACCCTCGCGGTAAAGGGAAGTGTAAGGCCGGACCGTGCTGCCCAAATGC
GTGCTCGTCTTTGAATCGACTTACGGGTGGCTCCGCTGAAATGGTTTCCT
CCTGTTGTGAGGAGAGCGTGACGCAATGTGTGCACAAGAGGGGAAAGCAG
AACTCTGATGGGCAGCGCGGAAAGAGGCGACCACCAACATTCTAA
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protein sequence of Gcaud2591.t1

>Gcaud2591.t1 ID=Gcaud2591.t1|Name=Gcaud2591.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=215bp
MRLAAVFFATVAAVVTAQFATEEAYLEFETEYGPIPSSHCSYYKKLQEQL
MSVVTVLINCGISKEKATDFVKWVVNENVFTVVDEPDMVCIPPESNTDIG
TRLGEIAREHIRTKGWDKRRRDDSPQLAFDGTDRDDTLAQKSCCRCSADE
YPRGKGKCKAGPCCPNACSSLNRLTGGSAEMVSSCCEESVTQCVHKRGKQ
NSDGQRGKRRPPTF*
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mRNA from alignment at NODE_53_length_63756_cov_4.464180:22234..22878-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2591.t1 ID=Gcaud2591.t1|Name=Gcaud2591.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=645bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:22234..22878- (Gracilaria caudata M_176_S67 male)
ATGCGTCTTGCCGCAGTGTTCTTCGCTACCGTGGCAGCAGTTGTTACTGC
TCAGTTCGCCACGGAAGAGGCTTATCTGGAGTTTGAAACTGAGTACGGCC
CGATTCCATCTTCTCACTGCAGTTATTACAAGAAGCTTCAGGAGCAATTG
ATGTCTGTTGTGACTGTTTTAATTAACTGCGGAATATCCAAGGAGAAAGC
TACAGACTTCGTGAAATGGGTTGTGAACGAGAATGTGTTTACGGTCGTTG
ACGAGCCCGACATGGTTTGCATTCCGCCGGAGTCCAACACGGATATTGGT
ACACGTTTAGGGGAGATTGCTCGCGAACATATCCGAACCAAGGGATGGGA
TAAGCGTCGTCGCGATGATTCTCCTCAGCTGGCGTTTGACGGAACTGATA
GAGATGATACGCTTGCGCAAAAGTCGTGCTGCCGGTGCAGTGCCGATGAG
TACCCTCGCGGTAAAGGGAAGTGTAAGGCCGGACCGTGCTGCCCAAATGC
GTGCTCGTCTTTGAATCGACTTACGGGTGGCTCCGCTGAAATGGTTTCCT
CCTGTTGTGAGGAGAGCGTGACGCAATGTGTGCACAAGAGGGGAAAGCAG
AACTCTGATGGGCAGCGCGGAAAGAGGCGACCACCAACATTCTAA
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Coding sequence (CDS) from alignment at NODE_53_length_63756_cov_4.464180:22234..22878-

>Gcaud2591.t1 ID=Gcaud2591.t1|Name=Gcaud2591.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=645bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:22234..22878- (Gracilaria caudata M_176_S67 male)
ATGCGTCTTGCCGCAGTGTTCTTCGCTACCGTGGCAGCAGTTGTTACTGC
TCAGTTCGCCACGGAAGAGGCTTATCTGGAGTTTGAAACTGAGTACGGCC
CGATTCCATCTTCTCACTGCAGTTATTACAAGAAGCTTCAGGAGCAATTG
ATGTCTGTTGTGACTGTTTTAATTAACTGCGGAATATCCAAGGAGAAAGC
TACAGACTTCGTGAAATGGGTTGTGAACGAGAATGTGTTTACGGTCGTTG
ACGAGCCCGACATGGTTTGCATTCCGCCGGAGTCCAACACGGATATTGGT
ACACGTTTAGGGGAGATTGCTCGCGAACATATCCGAACCAAGGGATGGGA
TAAGCGTCGTCGCGATGATTCTCCTCAGCTGGCGTTTGACGGAACTGATA
GAGATGATACGCTTGCGCAAAAGTCGTGCTGCCGGTGCAGTGCCGATGAG
TACCCTCGCGGTAAAGGGAAGTGTAAGGCCGGACCGTGCTGCCCAAATGC
GTGCTCGTCTTTGAATCGACTTACGGGTGGCTCCGCTGAAATGGTTTCCT
CCTGTTGTGAGGAGAGCGTGACGCAATGTGTGCACAAGAGGGGAAAGCAG
AACTCTGATGGGCAGCGCGGAAAGAGGCGACCACCAACATTCTAA
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